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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr2 | genome | chr2:287708..290450 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G00890.1 vs.
Match: EWM30591.1 (Protein phosphatase 2C, manganese/magnesium aspartate binding site [Nannochloropsis gaditana]) HSP 1 Score: 528.9 bits (1361), Expect = 1.700e-146 Identity = 329/483 (68.12%), Postives = 363/483 (75.16%), Query Frame = 0
Query: 8 RHQHHQHRRQQLANIGS--ISGITSSSLSRSIPRSSDNSFSTNTSSAGVRRLLSPSTANTSMHFYYNALGGGGSNRRSIFTTAAALASAYYMGGLARGSASAACEAPLPPSSPPSSSSSSSSSSSSSSSSSSSSSSSSSSSTTNNAPPTFIKFPIRRDSNHGNSTGRGAASATTLYPGSGQSTRSSSSTTTTSPASSSSMGSGSMGIIGGPYTTSVVAFKGQRSYMEDDFFISKDGSFSGVYDGHGGAAVSKYLRQNLNAQFLTALPDEDTTKLSDEVVAEALTQAFRVVDDAVLKVRHWSYMGSTAVAVVIHA------QGQGEGQPA---KRTLISANVGDSRAVLSRRGKAMDLTEDHKPNKPSELERVKALGGTVRWYGLLEQDGAPMEGMGVYRINGNLAVARAFGDRSERPFVSSEVEVKMVPVEDGDEFVILATDGLWDVMTSEDAVAFVHSVMSASVGALTEGGGEGGGGVGGGG 480
RH +R QQL+N + I G+T ++ R S F S + MHFYYN L G GS RRSIFTTAAALASAYYMGGLARGSASA+CEAPLPP PPSSSS SSS SSSSS+ S P FIKFP+RRDS+ + GRGA S T++YPG G S R SSS +T+SP SS G+ GGPYTTSVVAFKGQRSYMEDDFFISKDGSF+GVYDGHGGAAVSKYLRQNLNAQFL ALPD D +L E V EAL AFRVVD+AV+KVRHW+YMGSTAV VVIHA +G EG A KRTLI+ANVGDSRAVLSRRG+A+DLT+DHKPNKPSELERVKALGGTVRWYGLLEQDG+PMEGMGVYRINGNLAVARAFGDRSERPFVSSE E+K + VE+GDEFVILATDGLWDVM+SE+AV FVHSVMSASVGALTEG G+G GG G G
Sbjct: 4 RHLTRHNRHQQLSNALTLRIVGLTCTANRRRNAPSIVPGFPFPPSQSPY----------LGMHFYYNGLAGAGSYRRSIFTTAAALASAYYMGGLARGSASASCEAPLPPPPPPSSSSFSSSPSSSSSTDGQDSQ------------PRFIKFPLRRDSD--GTAGRGATSVTSIYPGKGHSIRRSSS-STSSPTGSSKASGGA----GGPYTTSVVAFKGQRSYMEDDFFISKDGSFAGVYDGHGGAAVSKYLRQNLNAQFLAALPDADMRRLGQEKVTEALATAFRVVDEAVVKVRHWAYMGSTAVVVVIHAEEAKAKEGVEEGGRAGALKRTLIAANVGDSRAVLSRRGQAVDLTDDHKPNKPSELERVKALGGTVRWYGLLEQDGSPMEGMGVYRINGNLAVARAFGDRSERPFVSSEAEIKQLAVEEGDEFVILATDGLWDVMSSEEAVNFVHSVMSASVGALTEGVGDGVGGAGAEG 457
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G00890.1 ID=NO02G00890.1|Name=NO02G00890.1|organism=Nannochloropsis oceanica|type=mRNA|length=2743bp
CATTTTTTGCAAGACCATGAGATTCATGAACAACGGCAATCGCAACCTCC
ACCGCACAGTAGACTCCTTTCTATTGAAATAGCTCTGCCGCATGCCTGAA
AACGCCCGCACCACCAACAGTCCAGGTGTAAGCTTGCTCGTGTGTTGGGT
GCGAGTGATGTCGGGAGGTTTTGGCCAGCCGTGGGGCTGTAATACCAAAT
TGATGATGAAAAGAAGGAAGCCGAGCTTGGAAGGCACTTGGAAGGCAACA
TCAATCCAAGGACAACTTAGCCTGTCCCGTTGCCCACACAAATAAACGTG
CCAACCGCCTCTAAACATCATATCGCACAGGGAGACATTCTCAACCCCGG
TCGCGATCTGCTGCCGTTGTTGCCCCGTCCCCTGTTGACGTCTCCCCCTC
CCACCTCCTCCGTCTACAACATCGCAGCAGCACAGGCGGCGTCTTGCGTC
GTAAAAGGAGAAGCAGATCACGCGCTTGGGCGTGCCTGTGTGTGTGTGTG
CGTGCGTGTGTGTGTGTGTGCGTGTGTGTGGTGGGGTAGATTGCAAGGAC
CTCTTTTGTGCTCTTCTCCTCGCCCACAACCCTAACCCCAGTCTGTGCTT
AGACTAGAGGACCTGGGTCTTGATGATCCTCCGGCGGTTTCCGAGGCATC
AACACCACCAGCACCGCCGCCAGCAGCTTGCCAACATTGGTTCGATCTCA
GGTATCACTAGCAGCAGCCTCAGCAGGAGCATTCCGCGCAGCAGCGACAA
CAGTTTCAGCACCAATACCAGCAGCGCAGGAGTCCGTCGACTCCTCTCTC
CTTCCACCGCCAACACAAGCATGCACTTTTACTACAATGCCCTAGGCGGA
GGCGGTTCCAATCGTCGATCAATCTTCACAACCGCGGCAGCCCTTGCCTC
CGCATACTATATGGGTGGCCTCGCCCGTGGCTCTGCCTCTGCGGCGTGCG
AGGCACCTTTACCCCCCTCTTCTCCCCCATCCTCCTCCTCCTCATCCTCC
TCCTCCTCCTCCTCATCGTCATCATCATCATCATCGTCGTCGTCGTCGTC
ATCATCCAGCACCACAAATAATGCCCCACCCACGTTCATAAAATTTCCCA
TTCGGCGCGACAGCAATCACGGCAATAGCACCGGAAGAGGGGCCGCCTCG
GCGACCACTCTCTACCCCGGTAGCGGCCAGTCCACCCGCTCCTCCTCCTC
CACCACCACCACCTCCCCGGCCTCTTCATCCTCCATGGGCAGCGGCAGTA
TGGGAATTATTGGCGGCCCCTATACCACGTCAGTTGTTGCCTTCAAGGGC
CAACGATCTTACATGGAAGATGATTTTTTCATTAGTAAAGACGGGAGCTT
TAGTGGGGTCTATGACGGGCATGGGGGGGCGGCCGTGTCAAAATATTTGC
GGCAGAATCTGAATGCCCAGTTCTTGACGGCCTTGCCAGACGAGGACACG
ACCAAATTGAGCGATGAGGTGGTTGCCGAAGCGCTGACGCAAGCCTTTCG
CGTGGTGGATGACGCGGTCCTTAAAGTCAGGCATTGGTCGTACATGGGCT
CCACAGCTGTGGCCGTTGTGATTCATGCCCAGGGTCAGGGGGAAGGACAG
CCGGCGAAACGAACGTTAATCAGTGCCAATGTTGGTGATTCCCGCGCGGT
GTTGAGTAGGAGAGGGAAGGCAATGGACCTGACAGAGGATCATAAGCCGA
ACAAACCCAGTGAATTGGAGAGGGTGAAGGCGTTGGGGGGGACGGTAAGG
TGGTATGGATTATTGGAGCAGGATGGGGCGCCGATGGAGGGCATGGGCGT
GTACCGGATAAATGGGAATCTGGCGGTGGCACGGGCGTTTGGAGACAGGA
GTGAGAGGCCATTTGTGTCAAGTGAGGTGGAGGTGAAGATGGTGCCGGTT
GAAGACGGGGATGAGTTTGTGATTCTGGCGACGGATGGGCTGTGGGATGT
GATGACTTCGGAAGATGCCGTGGCGTTTGTGCATTCAGTGATGAGTGCGA
GTGTAGGAGCATTGACTGAGGGAGGAGGGGAGGGAGGGGGAGGAGTAGGA
GGGGGGGGGGGGAGCCGGCTGGGCAGCGTGTGGCAGACATGAAAATTTTT
GATTGGACGAAGCAGCATGCGAATGACCGGGGGATTATTCGAGCAGCGAT
GATGGCGAGGAAGAAGAAAATGGCCAGGTACTTGAGTGAGGAGGCCTTCA
GGAGGGGAACATCTGACAATGTGACTGTGGTAGTGGTATGGTTCTGAAGT
CTGAGTTGAAAGAAATGTGGGACGGAGAGAAGGGGGATAAGTAGAATAAA
AGAGAAGGGAAATGCAGGGGAAAATCACACAGCAGATGGGTAGTTACACC
AGCGGCTGGTGGAGAGAAGAACAAATGCGTTGGGTTAGGGTTACCTGGAT
GCGTAAAGCCGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAGCAACAGTA
GAAGCCGAGGAAATCTCAAGCAGCAATAATGGTAGGATGGAAATTAAGCG
CGAGAAGAAGGCGGAGGCACGCTCCGTCGCAGCGGCAGGAAAGACAGTGG
AGAAGCGCGGACGAAGCTTGGATACGGCCATCTATGGCTCATGTGAGATG
TAAACAAAACAGGGAGATGGATCTCCCCTACGCTTTGGAATTGGACCAGC
CAGCCCACAAAAGGAGAAATCCACGACAACCCCAAATAGCACA back to topprotein sequence of NO02G00890.1 >NO02G00890.1-protein ID=NO02G00890.1-protein|Name=NO02G00890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=490bp
MILRRFPRHQHHQHRRQQLANIGSISGITSSSLSRSIPRSSDNSFSTNTS
SAGVRRLLSPSTANTSMHFYYNALGGGGSNRRSIFTTAAALASAYYMGGL
ARGSASAACEAPLPPSSPPSSSSSSSSSSSSSSSSSSSSSSSSSSSTTNN
APPTFIKFPIRRDSNHGNSTGRGAASATTLYPGSGQSTRSSSSTTTTSPA
SSSSMGSGSMGIIGGPYTTSVVAFKGQRSYMEDDFFISKDGSFSGVYDGH
GGAAVSKYLRQNLNAQFLTALPDEDTTKLSDEVVAEALTQAFRVVDDAVL
KVRHWSYMGSTAVAVVIHAQGQGEGQPAKRTLISANVGDSRAVLSRRGKA
MDLTEDHKPNKPSELERVKALGGTVRWYGLLEQDGAPMEGMGVYRINGNL
AVARAFGDRSERPFVSSEVEVKMVPVEDGDEFVILATDGLWDVMTSEDAV
AFVHSVMSASVGALTEGGGEGGGGVGGGGGSRLGSVWQT* back to topmRNA from alignment at chr2:287708..290450- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G00890.1 ID=NO02G00890.1|Name=NO02G00890.1|organism=Nannochloropsis oceanica|type=mRNA|length=2743bp|location=Sequence derived from alignment at chr2:287708..290450- (Nannochloropsis oceanica)
CATTTTTTGCAAGACCATGAGATTCATGAACAACGGCAATCGCAACCTCC
ACCGCACAGTAGACTCCTTTCTATTGAAATAGCTCTGCCGCATGCCTGAA
AACGCCCGCACCACCAACAGTCCAGGTGTAAGCTTGCTCGTGTGTTGGGT
GCGAGTGATGTCGGGAGGTTTTGGCCAGCCGTGGGGCTGTAATACCAAAT
TGATGATGAAAAGAAGGAAGCCGAGCTTGGAAGGCACTTGGAAGGCAACA
TCAATCCAAGGACAACTTAGCCTGTCCCGTTGCCCACACAAATAAACGTG
CCAACCGCCTCTAAACATCATATCGCACAGGGAGACATTCTCAACCCCGG
TCGCGATCTGCTGCCGTTGTTGCCCCGTCCCCTGTTGACGTCTCCCCCTC
CCACCTCCTCCGTCTACAACATCGCAGCAGCACAGGCGGCGTCTTGCGTC
GTAAAAGGAGAAGCAGATCACGCGCTTGGGCGTGCCTGTGTGTGTGTGTG
CGTGCGTGTGTGTGTGTGTGCGTGTGTGTGGTGGGGTAGATTGCAAGGAC
CTCTTTTGTGCTCTTCTCCTCGCCCACAACCCTAACCCCAGTCTGTGCTT
AGACTAGAGGACCTGGGTCTTGATGATCCTCCGGCGGTTTCCGAGGCATC
AACACCACCAGCACCGCCGCCAGCAGCTTGCCAACATTGGTTCGATCTCA
GGTATCACTAGCAGCAGCCTCAGCAGGAGCATTCCGCGCAGCAGCGACAA
CAGTTTCAGCACCAATACCAGCAGCGCAGGAGTCCGTCGACTCCTCTCTC
CTTCCACCGCCAACACAAGCATGCACTTTTACTACAATGCCCTAGGCGGA
GGCGGTTCCAATCGTCGATCAATCTTCACAACCGCGGCAGCCCTTGCCTC
CGCATACTATATGGGTGGCCTCGCCCGTGGCTCTGCCTCTGCGGCGTGCG
AGGCACCTTTACCCCCCTCTTCTCCCCCATCCTCCTCCTCCTCATCCTCC
TCCTCCTCCTCCTCATCGTCATCATCATCATCATCGTCGTCGTCGTCGTC
ATCATCCAGCACCACAAATAATGCCCCACCCACGTTCATAAAATTTCCCA
TTCGGCGCGACAGCAATCACGGCAATAGCACCGGAAGAGGGGCCGCCTCG
GCGACCACTCTCTACCCCGGTAGCGGCCAGTCCACCCGCTCCTCCTCCTC
CACCACCACCACCTCCCCGGCCTCTTCATCCTCCATGGGCAGCGGCAGTA
TGGGAATTATTGGCGGCCCCTATACCACGTCAGTTGTTGCCTTCAAGGGC
CAACGATCTTACATGGAAGATGATTTTTTCATTAGTAAAGACGGGAGCTT
TAGTGGGGTCTATGACGGGCATGGGGGGGCGGCCGTGTCAAAATATTTGC
GGCAGAATCTGAATGCCCAGTTCTTGACGGCCTTGCCAGACGAGGACACG
ACCAAATTGAGCGATGAGGTGGTTGCCGAAGCGCTGACGCAAGCCTTTCG
CGTGGTGGATGACGCGGTCCTTAAAGTCAGGCATTGGTCGTACATGGGCT
CCACAGCTGTGGCCGTTGTGATTCATGCCCAGGGTCAGGGGGAAGGACAG
CCGGCGAAACGAACGTTAATCAGTGCCAATGTTGGTGATTCCCGCGCGGT
GTTGAGTAGGAGAGGGAAGGCAATGGACCTGACAGAGGATCATAAGCCGA
ACAAACCCAGTGAATTGGAGAGGGTGAAGGCGTTGGGGGGGACGGTAAGG
TGGTATGGATTATTGGAGCAGGATGGGGCGCCGATGGAGGGCATGGGCGT
GTACCGGATAAATGGGAATCTGGCGGTGGCACGGGCGTTTGGAGACAGGA
GTGAGAGGCCATTTGTGTCAAGTGAGGTGGAGGTGAAGATGGTGCCGGTT
GAAGACGGGGATGAGTTTGTGATTCTGGCGACGGATGGGCTGTGGGATGT
GATGACTTCGGAAGATGCCGTGGCGTTTGTGCATTCAGTGATGAGTGCGA
GTGTAGGAGCATTGACTGAGGGAGGAGGGGAGGGAGGGGGAGGAGTAGGA
GGGGGGGGGGGGAGCCGGCTGGGCAGCGTGTGGCAGACATGAAAATTTTT
GATTGGACGAAGCAGCATGCGAATGACCGGGGGATTATTCGAGCAGCGAT
GATGGCGAGGAAGAAGAAAATGGCCAGGTACTTGAGTGAGGAGGCCTTCA
GGAGGGGAACATCTGACAATGTGACTGTGGTAGTGGTATGGTTCTGAAGT
CTGAGTTGAAAGAAATGTGGGACGGAGAGAAGGGGGATAAGTAGAATAAA
AGAGAAGGGAAATGCAGGGGAAAATCACACAGCAGATGGGTAGTTACACC
AGCGGCTGGTGGAGAGAAGAACAAATGCGTTGGGTTAGGGTTACCTGGAT
GCGTAAAGCCGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAGCAACAGTA
GAAGCCGAGGAAATCTCAAGCAGCAATAATGGTAGGATGGAAATTAAGCG
CGAGAAGAAGGCGGAGGCACGCTCCGTCGCAGCGGCAGGAAAGACAGTGG
AGAAGCGCGGACGAAGCTTGGATACGGCCATCTATGGCTCATGTGAGATG
TAAACAAAACAGGGAGATGGATCTCCCCTACGCTTTGGAATTGGACCAGC
CAGCCCACAAAAGGAGAAATCCACGACAACCCCAAATAGCACA back to topCoding sequence (CDS) from alignment at chr2:287708..290450- >NO02G00890.1 ID=NO02G00890.1|Name=NO02G00890.1|organism=Nannochloropsis oceanica|type=CDS|length=1470bp|location=Sequence derived from alignment at chr2:287708..290450- (Nannochloropsis oceanica)
ATGATCCTCCGGCGGTTTCCGAGGCATCAACACCACCAGCACCGCCGCCA
GCAGCTTGCCAACATTGGTTCGATCTCAGGTATCACTAGCAGCAGCCTCA
GCAGGAGCATTCCGCGCAGCAGCGACAACAGTTTCAGCACCAATACCAGC
AGCGCAGGAGTCCGTCGACTCCTCTCTCCTTCCACCGCCAACACAAGCAT
GCACTTTTACTACAATGCCCTAGGCGGAGGCGGTTCCAATCGTCGATCAA
TCTTCACAACCGCGGCAGCCCTTGCCTCCGCATACTATATGGGTGGCCTC
GCCCGTGGCTCTGCCTCTGCGGCGTGCGAGGCACCTTTACCCCCCTCTTC
TCCCCCATCCTCCTCCTCCTCATCCTCCTCCTCCTCCTCCTCATCGTCAT
CATCATCATCATCGTCGTCGTCGTCGTCATCATCCAGCACCACAAATAAT
GCCCCACCCACGTTCATAAAATTTCCCATTCGGCGCGACAGCAATCACGG
CAATAGCACCGGAAGAGGGGCCGCCTCGGCGACCACTCTCTACCCCGGTA
GCGGCCAGTCCACCCGCTCCTCCTCCTCCACCACCACCACCTCCCCGGCC
TCTTCATCCTCCATGGGCAGCGGCAGTATGGGAATTATTGGCGGCCCCTA
TACCACGTCAGTTGTTGCCTTCAAGGGCCAACGATCTTACATGGAAGATG
ATTTTTTCATTAGTAAAGACGGGAGCTTTAGTGGGGTCTATGACGGGCAT
GGGGGGGCGGCCGTGTCAAAATATTTGCGGCAGAATCTGAATGCCCAGTT
CTTGACGGCCTTGCCAGACGAGGACACGACCAAATTGAGCGATGAGGTGG
TTGCCGAAGCGCTGACGCAAGCCTTTCGCGTGGTGGATGACGCGGTCCTT
AAAGTCAGGCATTGGTCGTACATGGGCTCCACAGCTGTGGCCGTTGTGAT
TCATGCCCAGGGTCAGGGGGAAGGACAGCCGGCGAAACGAACGTTAATCA
GTGCCAATGTTGGTGATTCCCGCGCGGTGTTGAGTAGGAGAGGGAAGGCA
ATGGACCTGACAGAGGATCATAAGCCGAACAAACCCAGTGAATTGGAGAG
GGTGAAGGCGTTGGGGGGGACGGTAAGGTGGTATGGATTATTGGAGCAGG
ATGGGGCGCCGATGGAGGGCATGGGCGTGTACCGGATAAATGGGAATCTG
GCGGTGGCACGGGCGTTTGGAGACAGGAGTGAGAGGCCATTTGTGTCAAG
TGAGGTGGAGGTGAAGATGGTGCCGGTTGAAGACGGGGATGAGTTTGTGA
TTCTGGCGACGGATGGGCTGTGGGATGTGATGACTTCGGAAGATGCCGTG
GCGTTTGTGCATTCAGTGATGAGTGCGAGTGTAGGAGCATTGACTGAGGG
AGGAGGGGAGGGAGGGGGAGGAGTAGGAGGGGGGGGGGGGAGCCGGCTGG
GCAGCGTGTGGCAGACATGA back to top
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