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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:276687..279361 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G00860.1 vs.
Match: XP_009040847.1 (hypothetical protein AURANDRAFT_32588 [Aureococcus anophagefferens]; EGB04460.1 hypothetical protein AURANDRAFT_32588 [Aureococcus anophagefferens]) HSP 1 Score: 228.0 bits (580), Expect = 1.100e-55 Identity = 155/441 (35.15%), Postives = 255/441 (57.82%), Query Frame = 0
Query: 16 DESPLKQIPQQVALYRAAFLARMQTSLEDVQALGQETDALKAQICQRNGRRADARMVLLQGADRRS--QNEEIDRRWEHLLLTSSVPPDQIQTSSDGSSAKIIENDSKDSIPLLELYRELEAQRGACTAMLQSKNDLIQEAQAQLTEHEEEYVQAISRYGLEIENMVLKMRADSKALQDHYEREMDALEATFVTEREGMQQAHQITMDGLVAQQKAADLRHSQDAQEGEERFQRELEALRVQDGEDYHQLQIRLEMERDAADRQVEEVMTTTQVQQEKLVHDHRILTDREVEKSASLAAQKMKLVKLRDSVLALTSEYKEHDAREKKRFEELTQEVCRLHKKYKDLQQRFRHFSCADRDRYDSAWARHEDEIQAAVEKVLAIDELLFVQLLGQEWTPPPRNDLLLELDEDKKQYAGGDEGPNPVGA-----HSKGKEEEGD 450
+ES + QQ+A A + +E+V + D +AQ ++ R+ LQ RS QN ++ RW LL ++P EL+ E+EAQ+ AC+ ++ SK+ LI+E Q QL +EEYV+A+ + +IE ++ +MR + K LQ+ YE E++A+E F+TER+ + QA++ +D L +++ +L + ++ EE++Q+E+E L V+DGE+Y++L+I+LE + ++Q+EE+ T Q+ EKL +++R+LT+R+ E S +LA K K KL+D + A+ ++Y+E DAR++K+ +ELT+E R+ K+Y+DLQ +FRHF +D+ R+D W HE+E+ V KVL DE++ Q LG W PP +L L D ++ A GD GP GA S+G+ +GD
Sbjct: 44 EESKRSKGQQQIANSLAHLDKKKSGGIENVTHVRVAADWREAQRRVAEEKQRQDRLQRLQEEAVRSGKQNAAVEMRWAELL-DQNMPQ--------------------------ELHNEIEAQKSACSEIIASKDALIREFQLQLKSKDEEYVKALKQQADDIEELLRRMRQEFKELQEEYEVELEAIEDAFLTERDDLLQANKGEIDALFEKRREMELLYMDKKRDREEQYQKEIEELLVKDGEEYNKLKIKLETDIQTLEQQLEEMRATYQLNTEKLEYNYRVLTERDNENSNTLAQLKRKQNKLKDMLSAIVAKYQETDARDRKKNDELTEEYRRITKQYRDLQAKFRHFEVSDKQRFDKVWGMHEEEVNDLVAKVLQADEIVHAQQLGWGWKPP---NLALLRDAAARRRADGD-GPPGGGADGASVDSRGRARDGD 453
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G00860.1 ID=NO02G00860.1|Name=NO02G00860.1|organism=Nannochloropsis oceanica|type=mRNA|length=2675bp ATGGTCTCGGAAAAGGTACTATTATCCTCGTCCTTACCCATGGTCGACGA GAGTCCTCTTAAACAAATTCCCCAGCAAGTCGCCCTTTACCGCGCCGCTT TCTTGGCACGAATGCAGACGAGTCTGGAGGATGTGCAGGCATTGGGCCAG GAAACTGACGCCTTGAAAGCCCAGATATGTCAACGCAATGGGCGGCGGGC CGATGCACGGATGGTGCTGCTGCAAGGAGCGGACAGGCGGTCGCAAAATG AGGAGATTGACAGGCGTTGGGAACACCTGCTCCTTACCTCTTCTGTCCCG CCCGATCAGATCCAGACTTCCTCTGATGGTAGCAGCGCGAAGATTATTGA GAATGACAGCAAAGATTCCATCCCGCTCCTTGAATTGTATCGGGAGCTCG AGGCGCAGCGCGGGGCTTGCACAGCCATGCTTCAGTCCAAGAACGACCTC ATTCAAGAAGCCCAAGCGCAGCTCACGGAGCATGAAGAGGAATACGTCCA AGCCATTTCACGATATGGCCTAGAGATCGAAAATATGGTTTTAAAGATGC GTGCGGACAGCAAGGCCTTGCAGGACCACTACGAGCGAGAGATGGATGCC TTGGAGGCCACCTTTGTGACGGAGCGGGAGGGTATGCAGCAGGCGCATCA GATCACTATGGACGGGCTTGTGGCTCAGCAGAAAGCAGCTGATCTCCGGC ATTCTCAAGATGCCCAAGAGGGGGAAGAACGCTTTCAGCGCGAGCTGGAA GCGTTGCGAGTGCAGGATGGGGAGGATTACCACCAGCTTCAGATTCGGTT GGAAATGGAGCGAGACGCTGCGGACCGGCAAGTGGAAGAGGTCATGACCA CGACGCAAGTGCAGCAAGAAAAGCTTGTGCACGACCACCGCATTCTGACG GATCGTGAAGTAGAGAAATCGGCGAGCCTGGCGGCGCAGAAAATGAAGTT GGTAAAGCTGAGGGATTCGGTACTGGCCTTGACCTCCGAGTACAAGGAAC ACGACGCGCGGGAGAAAAAGCGATTCGAGGAACTGACGCAGGAGGTCTGT CGCCTGCATAAGAAGTACAAGGACTTGCAGCAACGTTTTCGGCATTTTTC TTGCGCGGATCGGGATAGGTATGACAGTGCATGGGCGCGGCACGAGGATG AGATTCAAGCAGCGGTTGAGAAGGTGCTGGCGATTGACGAGCTTCTATTT GTGCAGCTTCTGGGGCAAGAATGGACGCCTCCGCCGAGGAACGACTTGTT GCTGGAGTTGGATGAAGATAAGAAACAATATGCCGGTGGTGACGAAGGCC CCAACCCGGTGGGCGCGCACTCGAAGGGGAAGGAGGAAGAGGGGGATGGA AGAGCTGCCACGGCCGTTGGGGGCGAGGAGGAGGAGAAGGAGAAGGATGG CGCTTTCGGCACAGGAAACGGACGTCAGGAAATAGATTCAGCGCTGGTGA TGGAGCAGGTATTGATGAACAAGATGCTTGGACTCATCATCCAGGAAGCT GATTTTCTTCTTCTTGAGGACACAGAAGCCGTAGAGGCACAGCAGAAAAA GGCGGCGGCAGCGGCAGAGAAGAAAGCCAAGAGCGGAACAAGGCCCAAGG CTGATTGGGTTAATACGGTGGCCAAGGTAGTGGCGGAGTTCCCGCCACTC CTGCGCAGAGATAAGGATACGAAGAGGAGCAGCAAGAGCGTGGAGATAAA GGCCCAAACGGAAAAGAAGGACGGCGAAGCAGAGACGGCTACGGTCCTTA TGCCTGAGGAGGCTGCTGTGGCTGCGCAGGAGGTGCATGCAATTGCCGCA AACGAGGGCAATGAACTGACACAAGCAGCGGAAGAAGCGATGCTGGTCGT ACCAGCGGCAGAAGAAGCAGCCACAGCAGCTGCAAAGGCCGCGCAGGCTG AGGAAGAGGACCTGCTGGGTGCATCACAATATGGCTGTCAGCGCGTACTC CGTGCCCTGGGCATCCAGGACGAGGCTGAGGCCCGGACGTTGCTCACGTA TTTCCTTAAAAAGAAGGAACGGAAAGAGGGAGAAAGCAGAGAGGGGGATG GGGGGGAGCAAAAGGAGGACGGGCTGGAAGAGGTAGGGATGATCCGGAAG CTTGCACTACTTTTGCCGGCCGCTGCGTTTGCCATTTCTCCGCAAGACAT GTATGTGATGATCGGACCTGAGGAGGTGATAGGCGCTTTGCACCGTTTCC TCTTTGACAAAAAGAGGCTGGAAGAGAATGCATGCAAGCAGCAGCTACGG CAGCGCCAGCGTCGGCATCGTCGGCAGAGCCTGAGCGGGAGCTGCAGTGG TCAAGGAGGAGGTACCGAGGGAGGAGAAGGAGATAGGACTTTGTGGCGAA GCCTGGCAAACGTCTTGCCGGCAGCGCATTTCCAGACGTGGCAAGACTTG GAGCAGTCACTCTTGGCGTACCATCGCTTGCTGGAGGAGCGAGGAAGGGT GTTGGGTTCGATGGAACGGTTGGAGGAGGAGAATGCCAGGTTGCGACTGA CTGTGAGGGCGTGTGTCGAAGACAGGGTGAATGGGGAGTTGTTGGTGCCT CCGTTTATGGATTCAGGAGCAGGAGGGGAAGGAGAGGGAGAAGAAGAGGG GCCTCGATAGAGGAAAGAGATATTGGAGGGAGAGGCAAGGATGGTATGAG AAATGAAGCCATATAGGTGAGAAGC back to topprotein sequence of NO02G00860.1 >NO02G00860.1-protein ID=NO02G00860.1-protein|Name=NO02G00860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=870bp MVSEKVLLSSSLPMVDESPLKQIPQQVALYRAAFLARMQTSLEDVQALGQ ETDALKAQICQRNGRRADARMVLLQGADRRSQNEEIDRRWEHLLLTSSVP PDQIQTSSDGSSAKIIENDSKDSIPLLELYRELEAQRGACTAMLQSKNDL IQEAQAQLTEHEEEYVQAISRYGLEIENMVLKMRADSKALQDHYEREMDA LEATFVTEREGMQQAHQITMDGLVAQQKAADLRHSQDAQEGEERFQRELE ALRVQDGEDYHQLQIRLEMERDAADRQVEEVMTTTQVQQEKLVHDHRILT DREVEKSASLAAQKMKLVKLRDSVLALTSEYKEHDAREKKRFEELTQEVC RLHKKYKDLQQRFRHFSCADRDRYDSAWARHEDEIQAAVEKVLAIDELLF VQLLGQEWTPPPRNDLLLELDEDKKQYAGGDEGPNPVGAHSKGKEEEGDG RAATAVGGEEEEKEKDGAFGTGNGRQEIDSALVMEQVLMNKMLGLIIQEA DFLLLEDTEAVEAQQKKAAAAAEKKAKSGTRPKADWVNTVAKVVAEFPPL LRRDKDTKRSSKSVEIKAQTEKKDGEAETATVLMPEEAAVAAQEVHAIAA NEGNELTQAAEEAMLVVPAAEEAATAAAKAAQAEEEDLLGASQYGCQRVL RALGIQDEAEARTLLTYFLKKKERKEGESREGDGGEQKEDGLEEVGMIRK LALLLPAAAFAISPQDMYVMIGPEEVIGALHRFLFDKKRLEENACKQQLR QRQRRHRRQSLSGSCSGQGGGTEGGEGDRTLWRSLANVLPAAHFQTWQDL EQSLLAYHRLLEERGRVLGSMERLEEENARLRLTVRACVEDRVNGELLVP PFMDSGAGGEGEGEEEGPR* back to topmRNA from alignment at chr2:276687..279361+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G00860.1 ID=NO02G00860.1|Name=NO02G00860.1|organism=Nannochloropsis oceanica|type=mRNA|length=2675bp|location=Sequence derived from alignment at chr2:276687..279361+ (Nannochloropsis oceanica) ATGGTCTCGGAAAAGGTACTATTATCCTCGTCCTTACCCATGGTCGACGA
GAGTCCTCTTAAACAAATTCCCCAGCAAGTCGCCCTTTACCGCGCCGCTT
TCTTGGCACGAATGCAGACGAGTCTGGAGGATGTGCAGGCATTGGGCCAG
GAAACTGACGCCTTGAAAGCCCAGATATGTCAACGCAATGGGCGGCGGGC
CGATGCACGGATGGTGCTGCTGCAAGGAGCGGACAGGCGGTCGCAAAATG
AGGAGATTGACAGGCGTTGGGAACACCTGCTCCTTACCTCTTCTGTCCCG
CCCGATCAGATCCAGACTTCCTCTGATGGTAGCAGCGCGAAGATTATTGA
GAATGACAGCAAAGATTCCATCCCGCTCCTTGAATTGTATCGGGAGCTCG
AGGCGCAGCGCGGGGCTTGCACAGCCATGCTTCAGTCCAAGAACGACCTC
ATTCAAGAAGCCCAAGCGCAGCTCACGGAGCATGAAGAGGAATACGTCCA
AGCCATTTCACGATATGGCCTAGAGATCGAAAATATGGTTTTAAAGATGC
GTGCGGACAGCAAGGCCTTGCAGGACCACTACGAGCGAGAGATGGATGCC
TTGGAGGCCACCTTTGTGACGGAGCGGGAGGGTATGCAGCAGGCGCATCA
GATCACTATGGACGGGCTTGTGGCTCAGCAGAAAGCAGCTGATCTCCGGC
ATTCTCAAGATGCCCAAGAGGGGGAAGAACGCTTTCAGCGCGAGCTGGAA
GCGTTGCGAGTGCAGGATGGGGAGGATTACCACCAGCTTCAGATTCGGTT
GGAAATGGAGCGAGACGCTGCGGACCGGCAAGTGGAAGAGGTCATGACCA
CGACGCAAGTGCAGCAAGAAAAGCTTGTGCACGACCACCGCATTCTGACG
GATCGTGAAGTAGAGAAATCGGCGAGCCTGGCGGCGCAGAAAATGAAGTT
GGTAAAGCTGAGGGATTCGGTACTGGCCTTGACCTCCGAGTACAAGGAAC
ACGACGCGCGGGAGAAAAAGCGATTCGAGGAACTGACGCAGGAGGTCTGT
CGCCTGCATAAGAAGTACAAGGACTTGCAGCAACGTTTTCGGCATTTTTC
TTGCGCGGATCGGGATAGGTATGACAGTGCATGGGCGCGGCACGAGGATG
AGATTCAAGCAGCGGTTGAGAAGGTGCTGGCGATTGACGAGCTTCTATTT
GTGCAGCTTCTGGGGCAAGAATGGACGCCTCCGCCGAGGAACGACTTGTT
GCTGGAGTTGGATGAAGATAAGAAACAATATGCCGGTGGTGACGAAGGCC
CCAACCCGGTGGGCGCGCACTCGAAGGGGAAGGAGGAAGAGGGGGATGGA
AGAGCTGCCACGGCCGTTGGGGGCGAGGAGGAGGAGAAGGAGAAGGATGG
CGCTTTCGGCACAGGAAACGGACGTCAGGAAATAGATTCAGCGCTGGTGA
TGGAGCAGGTATTGATGAACAAGATGCTTGGACTCATCATCCAGGAAGCT
GATTTTCTTCTTCTTGAGGACACAGAAGCCGTAGAGGCACAGCAGAAAAA
GGCGGCGGCAGCGGCAGAGAAGAAAGCCAAGAGCGGAACAAGGCCCAAGG
CTGATTGGGTTAATACGGTGGCCAAGGTAGTGGCGGAGTTCCCGCCACTC
CTGCGCAGAGATAAGGATACGAAGAGGAGCAGCAAGAGCGTGGAGATAAA
GGCCCAAACGGAAAAGAAGGACGGCGAAGCAGAGACGGCTACGGTCCTTA
TGCCTGAGGAGGCTGCTGTGGCTGCGCAGGAGGTGCATGCAATTGCCGCA
AACGAGGGCAATGAACTGACACAAGCAGCGGAAGAAGCGATGCTGGTCGT
ACCAGCGGCAGAAGAAGCAGCCACAGCAGCTGCAAAGGCCGCGCAGGCTG
AGGAAGAGGACCTGCTGGGTGCATCACAATATGGCTGTCAGCGCGTACTC
CGTGCCCTGGGCATCCAGGACGAGGCTGAGGCCCGGACGTTGCTCACGTA
TTTCCTTAAAAAGAAGGAACGGAAAGAGGGAGAAAGCAGAGAGGGGGATG
GGGGGGAGCAAAAGGAGGACGGGCTGGAAGAGGTAGGGATGATCCGGAAG
CTTGCACTACTTTTGCCGGCCGCTGCGTTTGCCATTTCTCCGCAAGACAT
GTATGTGATGATCGGACCTGAGGAGGTGATAGGCGCTTTGCACCGTTTCC
TCTTTGACAAAAAGAGGCTGGAAGAGAATGCATGCAAGCAGCAGCTACGG
CAGCGCCAGCGTCGGCATCGTCGGCAGAGCCTGAGCGGGAGCTGCAGTGG
TCAAGGAGGAGGTACCGAGGGAGGAGAAGGAGATAGGACTTTGTGGCGAA
GCCTGGCAAACGTCTTGCCGGCAGCGCATTTCCAGACGTGGCAAGACTTG
GAGCAGTCACTCTTGGCGTACCATCGCTTGCTGGAGGAGCGAGGAAGGGT
GTTGGGTTCGATGGAACGGTTGGAGGAGGAGAATGCCAGGTTGCGACTGA
CTGTGAGGGCGTGTGTCGAAGACAGGGTGAATGGGGAGTTGTTGGTGCCT
CCGTTTATGGATTCAGGAGCAGGAGGGGAAGGAGAGGGAGAAGAAGAGGG
GCCTCGATAGAGGAAAGAGATATTGGAGGGAGAGGCAAGGATGGTATGAG
AAATGAAGCCATATAGGTGAGAAGC back to topCoding sequence (CDS) from alignment at chr2:276687..279361+ >NO02G00860.1 ID=NO02G00860.1|Name=NO02G00860.1|organism=Nannochloropsis oceanica|type=CDS|length=2610bp|location=Sequence derived from alignment at chr2:276687..279361+ (Nannochloropsis oceanica) ATGGTCTCGGAAAAGGTACTATTATCCTCGTCCTTACCCATGGTCGACGA GAGTCCTCTTAAACAAATTCCCCAGCAAGTCGCCCTTTACCGCGCCGCTT TCTTGGCACGAATGCAGACGAGTCTGGAGGATGTGCAGGCATTGGGCCAG GAAACTGACGCCTTGAAAGCCCAGATATGTCAACGCAATGGGCGGCGGGC CGATGCACGGATGGTGCTGCTGCAAGGAGCGGACAGGCGGTCGCAAAATG AGGAGATTGACAGGCGTTGGGAACACCTGCTCCTTACCTCTTCTGTCCCG CCCGATCAGATCCAGACTTCCTCTGATGGTAGCAGCGCGAAGATTATTGA GAATGACAGCAAAGATTCCATCCCGCTCCTTGAATTGTATCGGGAGCTCG AGGCGCAGCGCGGGGCTTGCACAGCCATGCTTCAGTCCAAGAACGACCTC ATTCAAGAAGCCCAAGCGCAGCTCACGGAGCATGAAGAGGAATACGTCCA AGCCATTTCACGATATGGCCTAGAGATCGAAAATATGGTTTTAAAGATGC GTGCGGACAGCAAGGCCTTGCAGGACCACTACGAGCGAGAGATGGATGCC TTGGAGGCCACCTTTGTGACGGAGCGGGAGGGTATGCAGCAGGCGCATCA GATCACTATGGACGGGCTTGTGGCTCAGCAGAAAGCAGCTGATCTCCGGC ATTCTCAAGATGCCCAAGAGGGGGAAGAACGCTTTCAGCGCGAGCTGGAA GCGTTGCGAGTGCAGGATGGGGAGGATTACCACCAGCTTCAGATTCGGTT GGAAATGGAGCGAGACGCTGCGGACCGGCAAGTGGAAGAGGTCATGACCA CGACGCAAGTGCAGCAAGAAAAGCTTGTGCACGACCACCGCATTCTGACG GATCGTGAAGTAGAGAAATCGGCGAGCCTGGCGGCGCAGAAAATGAAGTT GGTAAAGCTGAGGGATTCGGTACTGGCCTTGACCTCCGAGTACAAGGAAC ACGACGCGCGGGAGAAAAAGCGATTCGAGGAACTGACGCAGGAGGTCTGT CGCCTGCATAAGAAGTACAAGGACTTGCAGCAACGTTTTCGGCATTTTTC TTGCGCGGATCGGGATAGGTATGACAGTGCATGGGCGCGGCACGAGGATG AGATTCAAGCAGCGGTTGAGAAGGTGCTGGCGATTGACGAGCTTCTATTT GTGCAGCTTCTGGGGCAAGAATGGACGCCTCCGCCGAGGAACGACTTGTT GCTGGAGTTGGATGAAGATAAGAAACAATATGCCGGTGGTGACGAAGGCC CCAACCCGGTGGGCGCGCACTCGAAGGGGAAGGAGGAAGAGGGGGATGGA AGAGCTGCCACGGCCGTTGGGGGCGAGGAGGAGGAGAAGGAGAAGGATGG CGCTTTCGGCACAGGAAACGGACGTCAGGAAATAGATTCAGCGCTGGTGA TGGAGCAGGTATTGATGAACAAGATGCTTGGACTCATCATCCAGGAAGCT GATTTTCTTCTTCTTGAGGACACAGAAGCCGTAGAGGCACAGCAGAAAAA GGCGGCGGCAGCGGCAGAGAAGAAAGCCAAGAGCGGAACAAGGCCCAAGG CTGATTGGGTTAATACGGTGGCCAAGGTAGTGGCGGAGTTCCCGCCACTC CTGCGCAGAGATAAGGATACGAAGAGGAGCAGCAAGAGCGTGGAGATAAA GGCCCAAACGGAAAAGAAGGACGGCGAAGCAGAGACGGCTACGGTCCTTA TGCCTGAGGAGGCTGCTGTGGCTGCGCAGGAGGTGCATGCAATTGCCGCA AACGAGGGCAATGAACTGACACAAGCAGCGGAAGAAGCGATGCTGGTCGT ACCAGCGGCAGAAGAAGCAGCCACAGCAGCTGCAAAGGCCGCGCAGGCTG AGGAAGAGGACCTGCTGGGTGCATCACAATATGGCTGTCAGCGCGTACTC CGTGCCCTGGGCATCCAGGACGAGGCTGAGGCCCGGACGTTGCTCACGTA TTTCCTTAAAAAGAAGGAACGGAAAGAGGGAGAAAGCAGAGAGGGGGATG GGGGGGAGCAAAAGGAGGACGGGCTGGAAGAGGTAGGGATGATCCGGAAG CTTGCACTACTTTTGCCGGCCGCTGCGTTTGCCATTTCTCCGCAAGACAT GTATGTGATGATCGGACCTGAGGAGGTGATAGGCGCTTTGCACCGTTTCC TCTTTGACAAAAAGAGGCTGGAAGAGAATGCATGCAAGCAGCAGCTACGG CAGCGCCAGCGTCGGCATCGTCGGCAGAGCCTGAGCGGGAGCTGCAGTGG TCAAGGAGGAGGTACCGAGGGAGGAGAAGGAGATAGGACTTTGTGGCGAA GCCTGGCAAACGTCTTGCCGGCAGCGCATTTCCAGACGTGGCAAGACTTG GAGCAGTCACTCTTGGCGTACCATCGCTTGCTGGAGGAGCGAGGAAGGGT GTTGGGTTCGATGGAACGGTTGGAGGAGGAGAATGCCAGGTTGCGACTGA CTGTGAGGGCGTGTGTCGAAGACAGGGTGAATGGGGAGTTGTTGGTGCCT CCGTTTATGGATTCAGGAGCAGGAGGGGAAGGAGAGGGAGAAGAAGAGGG GCCTCGATAG back to top
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