NO02G00850.3, NO02G00850.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G00850.3
Unique NameNO02G00850.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2004
Alignment locationchr2:273400..276237 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:273400..276237 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G00850.3 vs.
Match: EWM30570.1 (protein of unknown function DUF4033 [Nannochloropsis gaditana]; EWM30571.1 protein of unknown function DUF4033 [Nannochloropsis gaditana])

HSP 1 Score: 330.1 bits (845), Expect = 6.800e-87
Identity = 179/285 (62.81%), Postives = 212/285 (74.39%), Query Frame = 0
Query:    6 SSSKAGGGEV-KAVAPQGPAQRRA--RRRNITF-QLPLLIIVIFVALAGSAQAFIRL---RPSPSSSSSSSCPAPRLLTQAHLFGLGGRSDNKNKSSPTGMKAPTPRPFAPENMATYDDDLFAKIWIFLFSGKIAAVVGVPSPRRFIEYEEYVRLSQLLLKAGSTKAKTAVLTVLRSIAFPGFSSIFRTLFPGTSRFACEFNAKVTPVFFSWLVGPAVVETSEMRNPKTDEVEVWANSVKIQRCRYLESVQCKGACASICKLPTQAFFTEDLGMPVTMTPNFDDL 284
            S+S  GG EV K   P   ++ R+  RRR++        ++++   + G A AF  L   R +  +S  +S P P    +  LFG GG+    NK+S  G  +  P+PFAPE M  Y+DD+FAKIWIFLF+GKIAAVVG PSPR FI YEEYVRLS+LLL+ GSTKAK+AVL+VLRSIAFPGFSSIFR LFPG+SR ACEFNA+VTP+FFSWLVGPA VETSEM NP T   E+W+NSVKI+RCRYLESVQCKGAC SICKLPTQ FFTEDLGMPVTMTPNF+DL
Sbjct:   30 STSHNGGREVIKIEIPAAWSKPRSTYRRRHLRLIATHFFVLIVLCVIIGRACAFAPLHTRRIALPTSPFASRPPPNF--RRFLFGFGGKDSQTNKNS--GNSSLKPKPFAPERMVKYNDDIFAKIWIFLFTGKIAAVVGAPSPRNFIPYEEYVRLSRLLLRGGSTKAKSAVLSVLRSIAFPGFSSIFRALFPGSSRLACEFNARVTPIFFSWLVGPAKVETSEMLNPVTGARELWSNSVKIERCRYLESVQCKGACVSICKLPTQTFFTEDLGMPVTMTPNFEDL 310          
The following BLAST results are available for this feature:
BLAST of NO02G00850.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30570.16.800e-8762.81protein of unknown function DUF4033 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G00850NO02G00850Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G00850.3NO02G00850.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G00850.3.cds1NO02G00850.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00850.3.cds2NO02G00850.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G00850.3 ID=NO02G00850.3|Name=NO02G00850.3|organism=Nannochloropsis oceanica|type=mRNA|length=2004bp
GATGAGGCTCCTGTTCCTGTTGTTGAGGGGTGTGTGCGTGGGAAGGCGTG
AGGCGCAAGGGCTGGGAGCGTTAAGGCTGGCTGCTCTCATCAGTTCAAAG
CAGAAACAAAGAGTGATGGTCCTAGCCGACCGATGTTTGATGGAGCAAAA
CCCACGCGGCTTCCACTATGCTGTCCAAGCTATCGATTAGGGCCTGCCTG
GACATTGCGTTGCGGATGGTCAGATCGTGTGATTGTTTGGGTGGGGGGCG
TGAGGCGTAAAGTAGTGAGGAAGGCTCGCCAGCCTGGGTTTGGAGAAGCA
AGCCCATGACGGTGATGATGGAACGGTCGAGTAAGGCAGTTCAAGATCCT
CCTTGAGTGGCATGCATGTTGTCCATCTAATAGCCTCACGCCCTCTCGGT
AAAAATGCACAGGCCACAACAAAACAGCCAAAAGCATCAGTACAAAGACG
ACGATATAAGCTCCCCCAGCGGAACTGTGATTCCCACACCCCATGGTGCC
TTCACCGTCATCATCTAAGGCAGGGGGTGGGGAGGTGAAGGCAGTAGCTC
CTCAAGGACCCGCACAACGACGCGCAAGAAGAAGAAATATTACATTCCAG
CTACCTCTACTTATCATCGTCATCTTTGTCGCTTTAGCAGGCAGTGCGCA
GGCCTTTATACGCCTTCGGCCCTCTCCATCCTCCTCCTCCTCCTCTTCCT
GCCCTGCTCCACGCCTCCTTACCCAAGCCCACCTTTTTGGCCTCGGCGGC
CGCAGCGACAATAAAAACAAAAGCAGCCCAACAGGCATGAAAGCGCCAAC
TCCTAGACCTTTTGCGCCTGAGAACATGGCCACATATGACGACGACCTCT
TTGCTAAAATCTGGATTTTCCTCTTCAGTGGCAAAATTGCTGCCGTGGTC
GGCGTCCCTTCCCCCCGCCGCTTCATCGAATACGAGGAATACGTCCGTCT
CTCTCAGCTTCTGCTGAAGGCAGGATCAACCAAGGCAAAAACTGCTGTGT
TGACCGTCTTGCGCTCCATTGCCTTTCCGGGGTTTTCCTCCATTTTTCGC
ACGCTTTTTCCTGGCACCTCGCGATTTGCCTGTGAGTTTAATGCCAAAGT
AACGCCGGTGTTTTTCAGCTGGTTGGTGGGGCCGGCGGTGGTGGAGACGT
CGGAGATGCGGAATCCGAAGACGGATGAGGTCGAGGTATGGGCCAATAGT
GTGAAGATTCAGCGGTGCCGGTACCTGGAGAGCGTCCAGTGCAAGGGGGC
GTGTGCCAGCATCTGCAAGCTCCCGACCCAAGCGTTCTTTACGGAGGATT
TGGGTATGCCCGTGACCATGACGCCAAATTTTGATGATTTGAGGTAGGGA
CAAGGGGATGGAAGGAGGAGAATAAGGGAAGGGGCGAGGGAGACTCTTCC
CCCCTGCCTCTTCCAACAACTCAACTTGCACCTACACGCGCCGTTTTAGG
GAAATATCTCGCCCACTTTGCGGAGAGAGAGGAGAAGCTAAGAGATGAAG
GGACTTTGCGGCCAGACATTGACTACGAGACACACAAGCTAACCCCTCTC
CTTCTTGTCTTCTCACAAAGCCTGCGCTTGGGTGTCGGTCAACAAACTAC
ATGTATCTTGACAGATGCTCATCAGCTCTTCTTCTATATCACCCACTTCC
TTTCTCCTCTTTCCCCTTCCTCCCATCCTCCCTCATGCAGTTGCACCATG
ACCTTCGGCGTGGCCCCTTTGGCCTCCTCCGCCGACCCTATTTGCTCCGA
AGGATGCTTCAAAGAGTGCTCAAGCGCCATCATCTCCAAGAAAGCCTGCC
CCAAGATCATGGCAGCTTTGAATGGGGGGGAGTAAGCAGAGAGGGAGGAG
GGGGAAGAGGCATGTGGGAAACAGAATTGCCCGCGCGGCGTCGTAAATAG
TACGTTCTGGTTGAAAAATAAACAGTAAATAAAAGGTCTCAAGAAAAGAC
TCGTTGGATTCTTTTACTTTCACTTTTGCTTGCTTTGCCATGGCTGTTTC
GTTG
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protein sequence of NO02G00850.3

>NO02G00850.3-protein ID=NO02G00850.3-protein|Name=NO02G00850.3|organism=Nannochloropsis oceanica|type=polypeptide|length=285bp
MVPSPSSSKAGGGEVKAVAPQGPAQRRARRRNITFQLPLLIIVIFVALAG
SAQAFIRLRPSPSSSSSSSCPAPRLLTQAHLFGLGGRSDNKNKSSPTGMK
APTPRPFAPENMATYDDDLFAKIWIFLFSGKIAAVVGVPSPRRFIEYEEY
VRLSQLLLKAGSTKAKTAVLTVLRSIAFPGFSSIFRTLFPGTSRFACEFN
AKVTPVFFSWLVGPAVVETSEMRNPKTDEVEVWANSVKIQRCRYLESVQC
KGACASICKLPTQAFFTEDLGMPVTMTPNFDDLR*
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mRNA from alignment at chr2:273400..276237+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G00850.3 ID=NO02G00850.3|Name=NO02G00850.3|organism=Nannochloropsis oceanica|type=mRNA|length=2838bp|location=Sequence derived from alignment at chr2:273400..276237+ (Nannochloropsis oceanica)
GATGAGGCTCCTGTTCCTGTTGTTGAGGGGTGTGTGCGTGGGAAGGCGTG AGGCGCAAGGGCTGGGAGCGTTAAGGCTGGCTGCTCTCATCAGTTCAAAG CAGAAACAAAGAGTGATGGTCCTAGCCGACCGATGTTTGATGGAGCAAAA CCCACGCGGCTTCCACTATGCTGTCCAAGCTATCGATTAGGGCCTGCCTG GACATTGCGTTGCGGATGGTCAGATCGTGTGATTGTTTGGGTGGGGGGCG TGAGGCGTAAAGTAGTGAGGAAGGCTCGCCAGCCTGGGTTTGGAGAAGCA AGCCCATGACGGTGATGATGGAACGGTCGAGTAAGGCAGTTCAAGATCCT CCTTGAGTGGCATGCATGTTGTCCATCTAATAGCCTCACGCCCTCTCGGT AAAAATGCACAGGCCACAACAAAACAGCCAAAAGCATCAGTACAAAGACG ACGATATAAGCTCCCCCAGCGGAACTGTGATTCCCACACCCCATGGTGCC TTCACCGTCATCATCTAAGGCAGGGGGTGGGGAGGTGAAGGCAGTAGCTC CTCAAGGACCCGCACAACGACGCGCAAGAAGAAGAAATATTACATTCCAG CTACCTCTACTTATCATCGTCATCTTTGTCGCTTTAGCAGGCAGTGCGCA GGCCTTTATACGCCTTCGGCCCTCTCCATCCTCCTCCTCCTCCTCTTCCT GCCCTGCTCCACGCCTCCTTACCCAAGCCCACCTTTTTGGCCTCGGCGGC CGCAGCGACAATAAAAACAAAAGCAGCCCAACAGGCATGAAAGCGCCAAC TCCTAGACCTTTTGCGCCTGAGAACATGGCCACATATGACGACGACCTCT TTGCTAAAATCTGGATTTTCCTCTTCAGTGGCAAAATTGCTGCCGTGGTC GGCGTCCCTTCCCCCCGCCGCTTCATCGAATACGAGGAATACGTCCGTCT CTCTCAGCTTCTGCTGAAGGCAGGATCAACCAAGGCAAAAACTGCTGTGT TGACCGTCTTGCGCTCCATTGCCTTTCCGGGGTTTTCCTCCATTTTTCGC ACGCTTTTTCCTGGCACCTCGCGATTTGCCTGTGAGTTTAATGCCAAAGT AACGCCGGTGTTTTTCAGCTGGTTGGTGGGGCCGGCGGTGGTGGAGACGT CGGAGATGCGGAATCCGAAGACGTGCGTAATTTTGGAGGGAGGGAAGGGG GGAGAGAAGGGAGGGAGGGAGGGAGAGTGGGTGCGCGGCTTGGGTAGATC CGTAGGGGGGAAGGGAAGGCCAACGCACTTACACAAGTACGAACAAATCA CATTCTACTCCCACAGGGATGAGGTCGAGGTATGGGCCAATAGTGTGAAG ATTCAGCGGTGCCGGTACCTGGAGAGCGTCCAGTGCAAGGGGGCGTGTGC CAGCATCTGCAAGCTCCCGACCCAAGCGTTCTTTACGGAGGATTTGGGTA TGCCCGTGACCATGACGCCAAATTTTGATGATTTGAGGTAGGGACAAGGG GATGGAAGGAGGAGAATAAGGGAAGGGGCGAGGGAGACTCTTCCCCCCTG CCTCTTCCAACAACTCAACTTGCACCTACACGCGCCGTTTTAGGGAAATA TCTCGCCCACTTTGCGGAGAGAGAGGAGAAGCTAAGAGATGAAGGGACTT TGCGGCCAGACATTGACTACGAGACACACAAGCTAACCCCTCTCCTTCTT GTCTTCTCACAAAGCCTGCGCTTGGGTGTCGGTCAACAAACTACATGTAT CTTGACAGATGCTCATCAGCTCTTCTTCTATATCACCCACTTCCTTTCTC CTCTTTCCCCTTCCTCCCATCCTCCCTCATGCAGTTGCACCATGACCTTC GGCGTGGCCCCTTTGGCCTCCTCCGCCGACCCTATTTGCTCCGAAGGATG CTTCAAAGAGTGCTCAAGCGCCATCATCTCCAAGAAAGCCTGCCCCAAGA TCATGGCAGCTTTGAATGGGGGGGAGTAAGCAGAGAGGGAGGAGGGGGAA GAGGTATGTATGTATATATTTACATATGTATATAAATGTGTGTGTGTGTG TGTAGGTGTGTGTGTGTGGGTGGGTGTGAGCGAATGTCTTGTTTTTGTTA GTTGTCTCTGCCTGTCTGGTGATAGGGGGAAGAGGCAGGACGGTGTATGC ACAAAACTTGCCAAAAACGAATGGTAGAATTTGAAAGACGTGTAAGAGAT CAAAAGAATGACCAGAGAAGGAGGCTGTTGGTTCTCTCGCACTACCTTGT GGTGTCTTCCTTCCGCCCCTTGTGCCTCTCCTTTCCTCCTGAAAAGGAAG AAGAAGAAGGTTGCGTTTTTGATGGGACTGAAAGGGATTGAAAGAGGAAC TCGATAGACGATGAAGTCGGCCTCCTAGAAGGATAGAAATAGGGCTGGAC GAACAACTTGCCTCTCAATGGAATGAGATTGGCTCGCTACAGTCCCTGCC CACAATGGTGCATATGGTGTGAGGGTGTGTCTGTTCAAAATGCAGAAGGG TTTCAGTACATTTACACTGATGCAAGATCAATTGCGGGGGGTAGAGACGA GTTTTTCATTTTGTGAGATTGATTTGGAACGTGATTAAGTCTCAAGTATG TCGAAATATTGTATTGTTTTAATCCGATTTTAGATGGAGGGCGTGCTGAC CAATCTCCCCACCCTCACTTCCTTCTCCAACTCGTACAAGCAGGCATGTG GGAAACAGAATTGCCCGCGCGGCGTCGTAAATAGTACGTTCTGGTTGAAA AATAAACAGTAAATAAAAGGTCTCAAGAAAAGACTCGTTGGATTCTTTTA CTTTCACTTTTGCTTGCTTTGCCATGGCTGTTTCGTTG
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Coding sequence (CDS) from alignment at chr2:273400..276237+

>NO02G00850.3 ID=NO02G00850.3|Name=NO02G00850.3|organism=Nannochloropsis oceanica|type=CDS|length=855bp|location=Sequence derived from alignment at chr2:273400..276237+ (Nannochloropsis oceanica)
ATGGTGCCTTCACCGTCATCATCTAAGGCAGGGGGTGGGGAGGTGAAGGC
AGTAGCTCCTCAAGGACCCGCACAACGACGCGCAAGAAGAAGAAATATTA
CATTCCAGCTACCTCTACTTATCATCGTCATCTTTGTCGCTTTAGCAGGC
AGTGCGCAGGCCTTTATACGCCTTCGGCCCTCTCCATCCTCCTCCTCCTC
CTCTTCCTGCCCTGCTCCACGCCTCCTTACCCAAGCCCACCTTTTTGGCC
TCGGCGGCCGCAGCGACAATAAAAACAAAAGCAGCCCAACAGGCATGAAA
GCGCCAACTCCTAGACCTTTTGCGCCTGAGAACATGGCCACATATGACGA
CGACCTCTTTGCTAAAATCTGGATTTTCCTCTTCAGTGGCAAAATTGCTG
CCGTGGTCGGCGTCCCTTCCCCCCGCCGCTTCATCGAATACGAGGAATAC
GTCCGTCTCTCTCAGCTTCTGCTGAAGGCAGGATCAACCAAGGCAAAAAC
TGCTGTGTTGACCGTCTTGCGCTCCATTGCCTTTCCGGGGTTTTCCTCCA
TTTTTCGCACGCTTTTTCCTGGCACCTCGCGATTTGCCTGTGAGTTTAAT
GCCAAAGTAACGCCGGTGTTTTTCAGCTGGTTGGTGGGGCCGGCGGTGGT
GGAGACGTCGGAGATGCGGAATCCGAAGACGGATGAGGTCGAGGTATGGG
CCAATAGTGTGAAGATTCAGCGGTGCCGGTACCTGGAGAGCGTCCAGTGC
AAGGGGGCGTGTGCCAGCATCTGCAAGCTCCCGACCCAAGCGTTCTTTAC
GGAGGATTTGGGTATGCCCGTGACCATGACGCCAAATTTTGATGATTTGA
GGTAG
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Synonyms
Publications