NO02G00830.1, NO02G00830.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G00830.1
Unique NameNO02G00830.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2516
Alignment locationchr2:266308..269143 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:266308..269143 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G00830.1 vs.
Match: EWM30595.1 (peroxisomal membrane protein 2 [Nannochloropsis gaditana])

HSP 1 Score: 303.1 bits (775), Expect = 7.500e-79
Identity = 156/242 (64.46%), Postives = 191/242 (78.93%), Query Frame = 0 
Query:    6 DDVPPPAIITDDTTE-------STTTGTSSSHLALPAASPSPHTKTLKGELKRLIGAYHNSLVSRPLATKAVTSALISALGDVLASSGRAGRGRNGKRTLGFLLFGGLITGPVCHYWYGFLERHVKTFHGAKNVAIKVLLDKLLFTPPFLALTLFLLRALETGRFGPAWQGMKHIYVPTLKTNLKVWTVAQAINFTYTPPAYRVLFGNVVALWWSFYLSRLGGGAGGGAGKASSIVIVRRSY 241
            +D+P  A  T    E       +TT   +++  AL    P+    ++K ELKRL+ AYH+ LV+RP+ TKA+TSA+ISALGD+LASSG+ GRGR+G+RTLGF LFGGL+TGP+CHYWYG LE+ V+   G KNVA+KVLLDKLLFTPPFLALTLFLLR LE+GR G AW+GMK +Y PTLKTNL+VWTVAQAINF+Y  PAYRVLFGN+VALWWSFYLSRLGGGAG   G+ASS+V++R+ Y
Sbjct:    8 EDIPASAGPTSKPAEDEALSMATTTKSDTNTSAALICTFPA----SMKAELKRLLRAYHHCLVTRPVLTKALTSAVISALGDILASSGKGGRGRSGRRTLGFFLFGGLVTGPLCHYWYGLLEKKVRGLQGGKNVAMKVLLDKLLFTPPFLALTLFLLRLLESGRPGAAWRGMKQVYFPTLKTNLQVWTVAQAINFSYVSPAYRVLFGNLVALWWSFYLSRLGGGAG---GRASSVVLMRKRY 242
The following BLAST results are available for this feature:
BLAST of NO02G00830.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30595.17.500e-7964.46peroxisomal membrane protein 2 [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G00830NO02G00830Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G00830.1NO02G00830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G00830.1.cds1NO02G00830.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00830.1.cds2NO02G00830.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G00830.1 ID=NO02G00830.1|Name=NO02G00830.1|organism=Nannochloropsis oceanica|type=mRNA|length=2516bp
GTGGTTTTGTTATAGCACTCATAAATCCTTATTTCTGTTTCAATTTTCTC
AATACACATCTCCTACTTCTAAATACTGATCGTATAAATTACGTCTGTCC
CCTGCACCTCCACACCGTAACTTCCTCCCTCCCTCCCGCTCGCCCTCAGG
TAAGCCGCCACGGCCTTCCCTTCGAAGTCGTTTAATAAAGGCTCTTTTCG
AAACAAGAGACTCTGTAAGCTCCACAAATTCGCCGGCGCCCGACTCGAAA
TCTGCAATTTCATTATCCCCCTTCTTCCCTCCTTCCCTCCCTCTAGCACC
CTCACCTCCCCTCCCTGATTGTACTGTTTGGCCGTGAACAAATCCATGAT
TCTCTTCACGTTCTCCAACACCTCCTCATCCCCCGCCCGGCCCTCCTTCC
CTTTCTCCCTGCCCCTGACCGTTGGTGCATACACCTCAGGCGCCTCCAGA
AACTTGTCAAGTATCCTTTGTCCAACCCTCCGTGCATGCTCCGCGGGTAA
CAGGGCGTTGTCCTGAGGCAAGGAGGGGTCGTCCGCCCGACGGACGACCT
GCTTTTCTCCCTCTGCAGAGATCAGCTCGACAAACACCATCTTGCCATGG
CGCATTTCTTCATTTAATGTGCAGTATTGTGCAAAGGAAATAAAGTCGAA
GTAGGAGGGTTGGGTAAGCTCGCCTTGCCGGACGGAGAGGGGGGGAAAGG
TGTTGACGTAGTCTTCCCATTCGGCCTAATGGAGGAAGGGGGGGGGCAAA
GGGTTGAAGGGGGCGGAAGAAGTGATATTTTGAGAGAACAGCTAAGATAC
AGAAACTATACGACCAAGCTTAAACAAGGGATTTGTCAGGGCAGGGAATA
AATAAGGAACAGCGTATAGATTGCGCCGACACTTCACAGCCGCAACTATT
CGTCCTCCTGTCCCTTTCATTCTTCTCGTCCTTTCCTCCTTCCCCCTGTC
CATCTCTTACCTGTCGAAATGTGAAAAAATCCTTCTGAAAGTCATTCATT
GCCACAAAGTCCAACTCATCTGCAATCTCATAGGAGGACCGCATCAGCAA
CACTGCTAATTCCTTGTCGATTTTCAAGCGCAGGCCTTGGTACGGCTTTG
GACGAAGCTTGAGCTCGACTTGTCGACCTAGCCATTCGAAATATGTTGGG
CCGTCGTTTACTCCGCCATTTGTGGCGTGTGGGCTGCGGGAAGGACGGCG
GGCGAGGGGTAGAGGAAGCCGCCGGGAAGGGGATTGCGGGAGGAAGGCAG
ATGCGAAGGCGAGAAGCGTTATAAGGACAAGAAGCACGGGCAGATACTTT
ATCTGACATGTTTTCTGTCTTCTCCTTGACGGCCTTCGGCTGCTTGTCGT
GGAGGGACAGTGATGTCGGTGGTGGTAGCTGTCCATTTGCTCTTCGGTCC
AAACCCGCGTACCTGCCCTACCCCTCAGTCTCGTAGCTGCGAGCGGAAAG
ATCCTGAGGCTGGCCTGACGACTAAGATAATACCGAATACCTGTGAGGGA
AGAAAGAGAGCGTTGCTTTGGTAAATGGGCATGCGTAGACAGGCAAGCAA
GCTCATACCTCGTCACTTGATGCAGATGACGATGACGACTTGGGTATGCT
GATGACTCGCATACCCTCGCTTGCACTTCCTATATTTGAAATGTCAGCCA
CTTGACCACCCACATTCACCCTCCCCACCACTCTCGGCAAACACAGAACT
CGGTGTGGTAGTTTTTTCAGCGCACAAAAGCATGACCAGCGTTGTCGACG
ACGTCCCGCCACCGGCGATCATCACAGACGACACCACAGAGTCAACGACC
ACCGGCACCAGCAGCAGTCACTTGGCCCTGCCTGCTGCCAGCCCGAGCCC
CCACACGAAGACGCTAAAGGGCGAGCTTAAACGCCTCATTGGCGCCTACC
ATAACAGTCTCGTCAGCCGGCCCCTCGCCACGAAAGCCGTGACCAGTGCA
CTCATCTCCGCCTTGGGCGACGTCTTGGCCTCGTCAGGTCGTGCGGGGAG
AGGGCGCAACGGCAAACGAACGCTTGGGTTCCTTCTATTCGGAGGCCTGA
TCACCGGCCCCGTTTGCCACTATTGGTATGGATTCCTCGAACGCCATGTA
AAGACCTTCCACGGCGCTAAGAATGTGGCAATCAAGGTCCTCTTAGACAA
GCTGCTCTTCACGCCGCCCTTCCTCGCCCTCACTCTTTTCCTCCTTCGTG
CTCTCGAGACGGGTCGCTTCGGACCGGCTTGGCAAGGGATGAAACATATT
TACGTACCTACGTTAAAGACGAATTTGAAGGTCTGGACGGTGGCCCAAGC
CATCAATTTTACCTACACCCCCCCGGCGTATCGGGTCTTGTTTGGGAATG
TGGTGGCGTTGTGGTGGAGCTTTTACTTGTCCCGATTGGGGGGAGGGGCC
GGAGGAGGGGCAGGGAAAGCGTCGTCCATTGTGATTGTGCGGAGGAGTTA
TTAATTTGTCGGGATGCGTCTTGGGTTTGTTGATAGAAAGGAAGGGACGC
AGGCGAGGGAGGGAGG
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protein sequence of NO02G00830.1

>NO02G00830.1-protein ID=NO02G00830.1-protein|Name=NO02G00830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MTSVVDDVPPPAIITDDTTESTTTGTSSSHLALPAASPSPHTKTLKGELK
RLIGAYHNSLVSRPLATKAVTSALISALGDVLASSGRAGRGRNGKRTLGF
LLFGGLITGPVCHYWYGFLERHVKTFHGAKNVAIKVLLDKLLFTPPFLAL
TLFLLRALETGRFGPAWQGMKHIYVPTLKTNLKVWTVAQAINFTYTPPAY
RVLFGNVVALWWSFYLSRLGGGAGGGAGKASSIVIVRRSY*
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mRNA from alignment at chr2:266308..269143-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G00830.1 ID=NO02G00830.1|Name=NO02G00830.1|organism=Nannochloropsis oceanica|type=mRNA|length=2836bp|location=Sequence derived from alignment at chr2:266308..269143- (Nannochloropsis oceanica)
GTGGTTTTGTTATAGCACTCATAAATCCTTATTTCTGTTTCAATTTTCTC
AATACACATCTCCTACTTCTAAATACTGATCGTATAAATTACGTCTGTCC
CCTGCACCTCCACACCGTAACTTCCTCCCTCCCTCCCGCTCGCCCTCAGG
TAAGCCGCCACGGCCTTCCCTTCGAAGTCGTTTAATAAAGGCTCTTTTCG
AAACAAGAGACTCTGTAAGCTCCACAAATTCGCCGGCGCCCGACTCGAAA
TCTGCAATTTCATTATCCCCCTTCTTCCCTCCTTCCCTCCCTCTAGCACC
CTCACCTCCCCTCCCTGATTGTACTGTTTGGCCGTGAACAAATCCATGAT
TCTCTTCACGTTCTCCAACACCTCCTCATCCCCCGCCCGGCCCTCCTTCC
CTTTCTCCCTGCCCCTGACCGTTGGTGCATACACCTCAGGCGCCTCCAGA
AACTTGTCAAGTATCCTTTGTCCAACCCTCCGTGCATGCTCCGCGGGTAA
CAGGGCGTTGTCCTGAGGCAAGGAGGGGTCGTCCGCCCGACGGACGACCT
GCTTTTCTCCCTCTGCAGAGATCAGCTCGACAAACACCATCTTGCCATGG
CGCATTTCTTCATTTAATGTGCAGTATTGTGCAAAGGAAATAAAGTCGAA
GTAGGAGGGTTGGGTAAGCTCGCCTTGCCGGACGGAGAGGGGGGGAAAGG
TGTTGACGTAGTCTTCCCATTCGGCCTAATGGAGGAAGGGGGGGGGCAAA
GGGTTGAAGGGGGCGGAAGAAGTGATATTTTGAGAGAACAGCTAAGATAC
AGAAACTATACGACCAAGCTTAAACAAGGGATTTGTCAGGGCAGGGAATA
AATAAGGAACAGCGTATAGATTGCGCCGACACTTCACAGCCGCAACTATT
CGTCCTCCTGTCCCTTTCATTCTTCTCGTCCTTTCCTCCTTCCCCCTGTC
CATCTCTTACCTGTCGAAATGTGAAAAAATCCTTCTGAAAGTCATTCATT
GCCACAAAGTCCAACTCATCTGCAATCTCATAGGAGGACCGCATCAGCAA
CACTGCTAATTCCTTGTCGATTTTCAAGCGCAGGCCTTGGTACGGCTTTG
GACGAAGCTTGAGCTCGACTTGTCGACCTAGCCATTCGAAATATGTTGGG
CCGTCGTTTACTCCGCCATTTGTGGCGTGTGGGCTGCGGGAAGGACGGCG
GGCGAGGGGTAGAGGAAGCCGCCGGGAAGGGGATTGCGGGAGGAAGGCAG
ATGCGAAGGCGAGAAGCGTTATAAGGACAAGAAGCACGGGCAGATACTTT
ATCTGACATGTTTTCTGTCTTCTCCTTGACGGCCTTCGGCTGCTTGTCGT
GGAGGGACAGTGATGTCGGTGGTGGTAGCTGTCCATTTGCTCTTCGGTCC
AAACCCGCGTACCTGCCCTACCCCTCAGTCTCGTAGCTGCGAGCGGAAAG
ATCCTGAGGCTGGCCTGACGACTAAGATAATACCGAATACCTGTGAGGGA
AGAAAGAGAGCGTTGCTTTGGTAAATGGGCATGCGTAGACAGGCAAGCAA
GCTCATACCTCGTCACTTGATGCAGATGACGATGACGACTTGGGTATGCT
GATGACTCGCATACCCTCGCTTGCACTTCCTATATTTGAAATGTCAGCCA
CTTGACCACCCACATTCACCCTCCCCACCACTCTCGGCAAACACAGAACT
CGGTGTGGTAGTTTTTTCAGCGCACAAAAGCATGACCAGCGTTGTCGACG
ACGTCCCGCCACCGGCGATCATCACAGACGACACCACAGAGTCAACGACC
ACCGGCACCAGCAGCAGTCACTTGGCCCTGCCTGCTGCCAGCCCGAGCCC
CCACACGAAGACGCTAAAGGTACGCGTATGCATGTGTAATGGGTAGGGTA
GATACGTTGAGAATCTCCTCTTGGACCTTGGCCCAGACTCGAATGTTGCC
AGCTATCGCACCTCGAAATGCGCTCATAATTTGCGTACACCACTTTCAAA
GTTACGCGTCGCCAGATGCACCACATTGAGGCGTGTTTTGGCTCCTAAAC
TGCCTGGCTTGATTTCCATTTGTCTCCTCCCTTTTTCCATCATTCCCTTC
GCCCTTCCCCCCCACATACTCCCGCGCACTCTCACGACGCATCCCGTCCC
CTGGTCCTATCTCTTACTCCCTCCATTTCTCATACGCAGGGCGAGCTTAA
ACGCCTCATTGGCGCCTACCATAACAGTCTCGTCAGCCGGCCCCTCGCCA
CGAAAGCCGTGACCAGTGCACTCATCTCCGCCTTGGGCGACGTCTTGGCC
TCGTCAGGTCGTGCGGGGAGAGGGCGCAACGGCAAACGAACGCTTGGGTT
CCTTCTATTCGGAGGCCTGATCACCGGCCCCGTTTGCCACTATTGGTATG
GATTCCTCGAACGCCATGTAAAGACCTTCCACGGCGCTAAGAATGTGGCA
ATCAAGGTCCTCTTAGACAAGCTGCTCTTCACGCCGCCCTTCCTCGCCCT
CACTCTTTTCCTCCTTCGTGCTCTCGAGACGGGTCGCTTCGGACCGGCTT
GGCAAGGGATGAAACATATTTACGTACCTACGTTAAAGACGAATTTGAAG
GTCTGGACGGTGGCCCAAGCCATCAATTTTACCTACACCCCCCCGGCGTA
TCGGGTCTTGTTTGGGAATGTGGTGGCGTTGTGGTGGAGCTTTTACTTGT
CCCGATTGGGGGGAGGGGCCGGAGGAGGGGCAGGGAAAGCGTCGTCCATT
GTGATTGTGCGGAGGAGTTATTAATTTGTCGGGATGCGTCTTGGGTTTGT
TGATAGAAAGGAAGGGACGCAGGCGAGGGAGGGAGG
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Coding sequence (CDS) from alignment at chr2:266308..269143-

>NO02G00830.1 ID=NO02G00830.1|Name=NO02G00830.1|organism=Nannochloropsis oceanica|type=CDS|length=723bp|location=Sequence derived from alignment at chr2:266308..269143- (Nannochloropsis oceanica)
ATGACCAGCGTTGTCGACGACGTCCCGCCACCGGCGATCATCACAGACGA
CACCACAGAGTCAACGACCACCGGCACCAGCAGCAGTCACTTGGCCCTGC
CTGCTGCCAGCCCGAGCCCCCACACGAAGACGCTAAAGGGCGAGCTTAAA
CGCCTCATTGGCGCCTACCATAACAGTCTCGTCAGCCGGCCCCTCGCCAC
GAAAGCCGTGACCAGTGCACTCATCTCCGCCTTGGGCGACGTCTTGGCCT
CGTCAGGTCGTGCGGGGAGAGGGCGCAACGGCAAACGAACGCTTGGGTTC
CTTCTATTCGGAGGCCTGATCACCGGCCCCGTTTGCCACTATTGGTATGG
ATTCCTCGAACGCCATGTAAAGACCTTCCACGGCGCTAAGAATGTGGCAA
TCAAGGTCCTCTTAGACAAGCTGCTCTTCACGCCGCCCTTCCTCGCCCTC
ACTCTTTTCCTCCTTCGTGCTCTCGAGACGGGTCGCTTCGGACCGGCTTG
GCAAGGGATGAAACATATTTACGTACCTACGTTAAAGACGAATTTGAAGG
TCTGGACGGTGGCCCAAGCCATCAATTTTACCTACACCCCCCCGGCGTAT
CGGGTCTTGTTTGGGAATGTGGTGGCGTTGTGGTGGAGCTTTTACTTGTC
CCGATTGGGGGGAGGGGCCGGAGGAGGGGCAGGGAAAGCGTCGTCCATTG
TGATTGTGCGGAGGAGTTATTAA
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Synonyms
Publications