NO02G00730.1, NO02G00730.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G00730.1
Unique NameNO02G00730.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2066
Alignment locationchr2:243246..245311 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:243246..245311 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G00730.1 vs.
Match: EWM30552.1 (glycerol-3-phosphate transporter [Nannochloropsis gaditana])

HSP 1 Score: 688.3 bits (1775), Expect = 2.100e-194
Identity = 406/645 (62.95%), Postives = 463/645 (71.78%), Query Frame = 0 
Query:    1 MPFYARKRPPPGSVAASDGAPREGFSRQQVLLLLGLYMGYSSMMFSRAAMDVAIPLILQDEATGIGPRDIGTLLTLCSFFYLFGKISMGYSVDHVGPRFVFLGLASFASAGLTCLISFSTTASRMTILMCMLCVAQSSGWAAMTSMVSLWLQPSQYAMAFGILSTSSRMGDLASKVVLGQAVAQDWTWRSLFMVAAALQLSVAFLNLALMPKHPS-----------------DSTEREGRRIVELKSQRLHRGESFGIAHGAGFL---EEAGPLLDTSSSSSPSPSAG--SMSLTHIWAIARTPRFTSMAVAIAALHIVMEFDKYIPLYLHRSLDLSPGLAAQGAALYPLSQLVALGIAGIGYDRLSPRGRLYTITGLCLAVAWFYGLQLLLLLASSSPMVAHQNIYFTLIFLAGFSVAVPYYLPPSIYLAEVGGKGKCGTLSGVLDASGGLTSMGFHYGVGHLVSGGRWGVLLGVLSVCSMLGCLAMATFHSLSLGGRSGRWSQQQEQPQQQQLKNKKDLFMLGEDRSASALLPGRVTPSYSFRSSSSSIGSSISSSISNSGAGASHDY-HQQQQQKKMGGPSPASALSRLPLIGGVV----RLGWSLVGELVGGKSGGGIIVDRKRDRKDSNEGGYEKHLLPV 619
            MPFY RK  PPGS+AAS G      S QQ+ LLLGLY GY SMMFSRAAMDVAIPLILQDEATGI PRDIGTLLTLCSFFYLFGKISMGYSVD VGPR VFLGLASFASAGLTCLISFS TA+RMT LMC LCVAQSSGWAA+TSM+SLWLQPSQYAMAFGILSTSSRMGDLASKV LG+AVA  W WRSLF++AAALQL VAFLNL L+PK  S                  S   E ++     S +  R  + G  HGAG++   EE   LLDTS+SS P   +   S SL+ IWAIARTPRF SMA+AIAALHIVMEFDKYIPLYLHRSL LSPGLAAQGAALYPLSQL+ALG+AG+ YDRL PRGRL T+  LCL VA F+ LQ+LLLL  S+ ++  QNI+  LIF AGF VAVPYYLPPSIYLAEVGGKGKCGTLSGVLDASGG+TSMGFHYGVG+LV+  RWG+LLGV+SVC+++G  AM TFH +SL     R  +Q+          K DL       +   L   R T SY  R+      + I  + S +  GASH Y HQ   Q  + GP  AS LSRLPLIG ++     + W  + E   GK   G +++RK++RKDSN+G Y+KHL  V
Sbjct:  118 MPFYVRKHVPPGSIAASGGFFEGSLSHQQIRLLLGLYAGYCSMMFSRAAMDVAIPLILQDEATGIDPRDIGTLLTLCSFFYLFGKISMGYSVDQVGPRLVFLGLASFASAGLTCLISFSHTAARMTFLMCALCVAQSSGWAAITSMISLWLQPSQYAMAFGILSTSSRMGDLASKVALGRAVASGWDWRSLFILAAALQLFVAFLNLFLLPKATSIASFASAAPSMSFLSTTSSLIAEDKKQTLCASPQQRRPSTLGF-HGAGYIPDREEQLVLLDTSASSPPRSLSTYVSASLSQIWAIARTPRFRSMALAIAALHIVMEFDKYIPLYLHRSLGLSPGLAAQGAALYPLSQLLALGLAGVAYDRLKPRGRLLTVGALCLGVAGFFALQVLLLLTPSA-LLPRQNIFLLLIFCAGFCVAVPYYLPPSIYLAEVGGKGKCGTLSGVLDASGGVTSMGFHYGVGYLVARDRWGLLLGVVSVCALVGFRAMTTFHEVSLALDGSRAPRQK----------KNDLL----PETLPTLPTARTTTSYMSRT------NKIGGNESKANVGASHLYNHQPPLQYPLKGPIQASVLSRLPLIGHLIPRARGMSWMSMKE---GKPAVGAMMNRKKERKDSNDGNYQKHLAAV 737
The following BLAST results are available for this feature:
BLAST of NO02G00730.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30552.12.100e-19462.95glycerol-3-phosphate transporter [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G00730NO02G00730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G00730.1NO02G00730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G00730.1.cds1NO02G00730.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G00730.1 ID=NO02G00730.1|Name=NO02G00730.1|organism=Nannochloropsis oceanica|type=mRNA|length=2066bp
CACATTCTCTACTTCACCCACCCTCACGCGTGCATACCCTTTCCCACCCT
CACATCGGCAGCCATGCCCTTCTACGCCCGGAAGCGGCCTCCACCGGGAA
GCGTCGCTGCCAGTGACGGGGCGCCACGGGAAGGCTTTTCGCGACAGCAA
GTCCTCCTGTTGCTCGGCTTGTACATGGGCTACAGCTCCATGATGTTTTC
CAGGGCCGCCATGGACGTCGCAATCCCTCTGATCCTCCAAGACGAGGCAA
CAGGCATTGGGCCACGGGATATTGGCACGCTTTTGACCCTTTGCTCCTTT
TTCTACCTCTTCGGCAAGATAAGCATGGGGTACAGTGTTGATCATGTGGG
GCCGCGCTTCGTCTTCCTAGGGCTGGCTTCCTTTGCCTCGGCAGGATTAA
CATGTCTTATCTCATTTAGCACGACCGCATCGCGAATGACAATTTTAATG
TGCATGTTGTGCGTTGCCCAGTCCTCGGGGTGGGCAGCCATGACCAGCAT
GGTCTCTCTCTGGCTCCAACCGTCCCAATACGCAATGGCTTTTGGAATCC
TCTCCACTTCCTCCCGCATGGGAGACCTCGCCTCCAAAGTTGTGCTTGGC
CAGGCTGTCGCACAGGACTGGACTTGGCGATCCTTGTTCATGGTGGCAGC
AGCCCTGCAGTTGAGTGTGGCTTTTCTCAATCTTGCCCTGATGCCCAAGC
ACCCCTCCGACTCTACAGAAAGAGAGGGACGACGCATCGTGGAGCTTAAA
TCGCAACGGCTACACCGAGGGGAGAGCTTCGGCATTGCCCATGGCGCGGG
CTTTCTGGAAGAGGCTGGACCTTTACTTGATACGTCTTCATCTTCCTCGC
CGTCTCCCTCGGCCGGCAGTATGTCCCTCACCCACATCTGGGCTATTGCC
CGCACACCCCGATTTACATCCATGGCCGTTGCTATCGCCGCCCTTCACAT
CGTCATGGAATTCGACAAATATATCCCTCTCTATCTTCACCGCTCGCTCG
ACCTCTCCCCTGGCCTTGCCGCCCAGGGTGCTGCTCTCTACCCTCTTTCT
CAGCTGGTCGCACTAGGCATTGCCGGCATTGGCTACGACCGCCTCAGTCC
ACGTGGACGCCTCTATACCATCACTGGCCTCTGCCTGGCCGTTGCCTGGT
TCTATGGCCTACAACTCCTTCTCCTTCTTGCCTCATCCTCCCCCATGGTC
GCACATCAAAATATCTACTTCACCCTTATTTTCCTTGCGGGCTTCTCGGT
TGCCGTCCCTTATTACCTCCCTCCTTCCATCTATCTTGCCGAGGTGGGAG
GAAAAGGGAAATGCGGGACACTGTCGGGGGTTCTGGATGCGAGTGGTGGG
CTTACCTCAATGGGTTTTCATTATGGCGTCGGGCATTTGGTGAGTGGAGG
TAGGTGGGGTGTACTGTTGGGGGTGCTCTCCGTCTGCTCAATGCTAGGCT
GTTTGGCCATGGCGACGTTCCATTCTTTGTCTTTAGGCGGGAGGAGTGGG
CGGTGGAGCCAGCAGCAGGAACAGCCGCAGCAGCAGCAGCTGAAAAATAA
AAAGGACTTATTCATGTTGGGGGAAGATAGATCGGCTTCGGCCCTCCTTC
CTGGGCGTGTCACTCCTTCTTATAGCTTTCGTAGCAGTAGTAGCAGCATT
GGCAGTAGTATTAGCAGCAGTATCAGCAACAGTGGTGCTGGTGCCAGTCA
TGATTACCACCAGCAGCAACAGCAAAAGAAGATGGGGGGTCCATCGCCGG
CGAGCGCATTGTCGCGACTTCCTCTTATTGGAGGAGTGGTACGCTTAGGG
TGGTCTCTAGTAGGGGAACTTGTAGGGGGGAAGTCGGGAGGGGGAATAAT
TGTAGACAGAAAGAGGGATAGGAAGGACAGTAATGAGGGGGGGTACGAGA
AACACCTTTTGCCTGTCTGATAATCGTGTTGGGTAATGCATCGTGAATAC
GATGCACCAGTATGTATTCACGTGTGTGTATTAAATCAATCAAATATAGC
AAAATATCAAGAATGTGTTTAGCTAGTTGACATCCACGAGAAAGAATCAT
AGCTTCTTCCAGAAGA
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protein sequence of NO02G00730.1

>NO02G00730.1-protein ID=NO02G00730.1-protein|Name=NO02G00730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=619bp
MPFYARKRPPPGSVAASDGAPREGFSRQQVLLLLGLYMGYSSMMFSRAAM
DVAIPLILQDEATGIGPRDIGTLLTLCSFFYLFGKISMGYSVDHVGPRFV
FLGLASFASAGLTCLISFSTTASRMTILMCMLCVAQSSGWAAMTSMVSLW
LQPSQYAMAFGILSTSSRMGDLASKVVLGQAVAQDWTWRSLFMVAAALQL
SVAFLNLALMPKHPSDSTEREGRRIVELKSQRLHRGESFGIAHGAGFLEE
AGPLLDTSSSSSPSPSAGSMSLTHIWAIARTPRFTSMAVAIAALHIVMEF
DKYIPLYLHRSLDLSPGLAAQGAALYPLSQLVALGIAGIGYDRLSPRGRL
YTITGLCLAVAWFYGLQLLLLLASSSPMVAHQNIYFTLIFLAGFSVAVPY
YLPPSIYLAEVGGKGKCGTLSGVLDASGGLTSMGFHYGVGHLVSGGRWGV
LLGVLSVCSMLGCLAMATFHSLSLGGRSGRWSQQQEQPQQQQLKNKKDLF
MLGEDRSASALLPGRVTPSYSFRSSSSSIGSSISSSISNSGAGASHDYHQ
QQQQKKMGGPSPASALSRLPLIGGVVRLGWSLVGELVGGKSGGGIIVDRK
RDRKDSNEGGYEKHLLPV*
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mRNA from alignment at chr2:243246..245311-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G00730.1 ID=NO02G00730.1|Name=NO02G00730.1|organism=Nannochloropsis oceanica|type=mRNA|length=2066bp|location=Sequence derived from alignment at chr2:243246..245311- (Nannochloropsis oceanica)
CACATTCTCTACTTCACCCACCCTCACGCGTGCATACCCTTTCCCACCCT
CACATCGGCAGCCATGCCCTTCTACGCCCGGAAGCGGCCTCCACCGGGAA
GCGTCGCTGCCAGTGACGGGGCGCCACGGGAAGGCTTTTCGCGACAGCAA
GTCCTCCTGTTGCTCGGCTTGTACATGGGCTACAGCTCCATGATGTTTTC
CAGGGCCGCCATGGACGTCGCAATCCCTCTGATCCTCCAAGACGAGGCAA
CAGGCATTGGGCCACGGGATATTGGCACGCTTTTGACCCTTTGCTCCTTT
TTCTACCTCTTCGGCAAGATAAGCATGGGGTACAGTGTTGATCATGTGGG
GCCGCGCTTCGTCTTCCTAGGGCTGGCTTCCTTTGCCTCGGCAGGATTAA
CATGTCTTATCTCATTTAGCACGACCGCATCGCGAATGACAATTTTAATG
TGCATGTTGTGCGTTGCCCAGTCCTCGGGGTGGGCAGCCATGACCAGCAT
GGTCTCTCTCTGGCTCCAACCGTCCCAATACGCAATGGCTTTTGGAATCC
TCTCCACTTCCTCCCGCATGGGAGACCTCGCCTCCAAAGTTGTGCTTGGC
CAGGCTGTCGCACAGGACTGGACTTGGCGATCCTTGTTCATGGTGGCAGC
AGCCCTGCAGTTGAGTGTGGCTTTTCTCAATCTTGCCCTGATGCCCAAGC
ACCCCTCCGACTCTACAGAAAGAGAGGGACGACGCATCGTGGAGCTTAAA
TCGCAACGGCTACACCGAGGGGAGAGCTTCGGCATTGCCCATGGCGCGGG
CTTTCTGGAAGAGGCTGGACCTTTACTTGATACGTCTTCATCTTCCTCGC
CGTCTCCCTCGGCCGGCAGTATGTCCCTCACCCACATCTGGGCTATTGCC
CGCACACCCCGATTTACATCCATGGCCGTTGCTATCGCCGCCCTTCACAT
CGTCATGGAATTCGACAAATATATCCCTCTCTATCTTCACCGCTCGCTCG
ACCTCTCCCCTGGCCTTGCCGCCCAGGGTGCTGCTCTCTACCCTCTTTCT
CAGCTGGTCGCACTAGGCATTGCCGGCATTGGCTACGACCGCCTCAGTCC
ACGTGGACGCCTCTATACCATCACTGGCCTCTGCCTGGCCGTTGCCTGGT
TCTATGGCCTACAACTCCTTCTCCTTCTTGCCTCATCCTCCCCCATGGTC
GCACATCAAAATATCTACTTCACCCTTATTTTCCTTGCGGGCTTCTCGGT
TGCCGTCCCTTATTACCTCCCTCCTTCCATCTATCTTGCCGAGGTGGGAG
GAAAAGGGAAATGCGGGACACTGTCGGGGGTTCTGGATGCGAGTGGTGGG
CTTACCTCAATGGGTTTTCATTATGGCGTCGGGCATTTGGTGAGTGGAGG
TAGGTGGGGTGTACTGTTGGGGGTGCTCTCCGTCTGCTCAATGCTAGGCT
GTTTGGCCATGGCGACGTTCCATTCTTTGTCTTTAGGCGGGAGGAGTGGG
CGGTGGAGCCAGCAGCAGGAACAGCCGCAGCAGCAGCAGCTGAAAAATAA
AAAGGACTTATTCATGTTGGGGGAAGATAGATCGGCTTCGGCCCTCCTTC
CTGGGCGTGTCACTCCTTCTTATAGCTTTCGTAGCAGTAGTAGCAGCATT
GGCAGTAGTATTAGCAGCAGTATCAGCAACAGTGGTGCTGGTGCCAGTCA
TGATTACCACCAGCAGCAACAGCAAAAGAAGATGGGGGGTCCATCGCCGG
CGAGCGCATTGTCGCGACTTCCTCTTATTGGAGGAGTGGTACGCTTAGGG
TGGTCTCTAGTAGGGGAACTTGTAGGGGGGAAGTCGGGAGGGGGAATAAT
TGTAGACAGAAAGAGGGATAGGAAGGACAGTAATGAGGGGGGGTACGAGA
AACACCTTTTGCCTGTCTGATAATCGTGTTGGGTAATGCATCGTGAATAC
GATGCACCAGTATGTATTCACGTGTGTGTATTAAATCAATCAAATATAGC
AAAATATCAAGAATGTGTTTAGCTAGTTGACATCCACGAGAAAGAATCAT
AGCTTCTTCCAGAAGA
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Coding sequence (CDS) from alignment at chr2:243246..245311-

>NO02G00730.1 ID=NO02G00730.1|Name=NO02G00730.1|organism=Nannochloropsis oceanica|type=CDS|length=1857bp|location=Sequence derived from alignment at chr2:243246..245311- (Nannochloropsis oceanica)
ATGCCCTTCTACGCCCGGAAGCGGCCTCCACCGGGAAGCGTCGCTGCCAG
TGACGGGGCGCCACGGGAAGGCTTTTCGCGACAGCAAGTCCTCCTGTTGC
TCGGCTTGTACATGGGCTACAGCTCCATGATGTTTTCCAGGGCCGCCATG
GACGTCGCAATCCCTCTGATCCTCCAAGACGAGGCAACAGGCATTGGGCC
ACGGGATATTGGCACGCTTTTGACCCTTTGCTCCTTTTTCTACCTCTTCG
GCAAGATAAGCATGGGGTACAGTGTTGATCATGTGGGGCCGCGCTTCGTC
TTCCTAGGGCTGGCTTCCTTTGCCTCGGCAGGATTAACATGTCTTATCTC
ATTTAGCACGACCGCATCGCGAATGACAATTTTAATGTGCATGTTGTGCG
TTGCCCAGTCCTCGGGGTGGGCAGCCATGACCAGCATGGTCTCTCTCTGG
CTCCAACCGTCCCAATACGCAATGGCTTTTGGAATCCTCTCCACTTCCTC
CCGCATGGGAGACCTCGCCTCCAAAGTTGTGCTTGGCCAGGCTGTCGCAC
AGGACTGGACTTGGCGATCCTTGTTCATGGTGGCAGCAGCCCTGCAGTTG
AGTGTGGCTTTTCTCAATCTTGCCCTGATGCCCAAGCACCCCTCCGACTC
TACAGAAAGAGAGGGACGACGCATCGTGGAGCTTAAATCGCAACGGCTAC
ACCGAGGGGAGAGCTTCGGCATTGCCCATGGCGCGGGCTTTCTGGAAGAG
GCTGGACCTTTACTTGATACGTCTTCATCTTCCTCGCCGTCTCCCTCGGC
CGGCAGTATGTCCCTCACCCACATCTGGGCTATTGCCCGCACACCCCGAT
TTACATCCATGGCCGTTGCTATCGCCGCCCTTCACATCGTCATGGAATTC
GACAAATATATCCCTCTCTATCTTCACCGCTCGCTCGACCTCTCCCCTGG
CCTTGCCGCCCAGGGTGCTGCTCTCTACCCTCTTTCTCAGCTGGTCGCAC
TAGGCATTGCCGGCATTGGCTACGACCGCCTCAGTCCACGTGGACGCCTC
TATACCATCACTGGCCTCTGCCTGGCCGTTGCCTGGTTCTATGGCCTACA
ACTCCTTCTCCTTCTTGCCTCATCCTCCCCCATGGTCGCACATCAAAATA
TCTACTTCACCCTTATTTTCCTTGCGGGCTTCTCGGTTGCCGTCCCTTAT
TACCTCCCTCCTTCCATCTATCTTGCCGAGGTGGGAGGAAAAGGGAAATG
CGGGACACTGTCGGGGGTTCTGGATGCGAGTGGTGGGCTTACCTCAATGG
GTTTTCATTATGGCGTCGGGCATTTGGTGAGTGGAGGTAGGTGGGGTGTA
CTGTTGGGGGTGCTCTCCGTCTGCTCAATGCTAGGCTGTTTGGCCATGGC
GACGTTCCATTCTTTGTCTTTAGGCGGGAGGAGTGGGCGGTGGAGCCAGC
AGCAGGAACAGCCGCAGCAGCAGCAGCTGAAAAATAAAAAGGACTTATTC
ATGTTGGGGGAAGATAGATCGGCTTCGGCCCTCCTTCCTGGGCGTGTCAC
TCCTTCTTATAGCTTTCGTAGCAGTAGTAGCAGCATTGGCAGTAGTATTA
GCAGCAGTATCAGCAACAGTGGTGCTGGTGCCAGTCATGATTACCACCAG
CAGCAACAGCAAAAGAAGATGGGGGGTCCATCGCCGGCGAGCGCATTGTC
GCGACTTCCTCTTATTGGAGGAGTGGTACGCTTAGGGTGGTCTCTAGTAG
GGGAACTTGTAGGGGGGAAGTCGGGAGGGGGAATAATTGTAGACAGAAAG
AGGGATAGGAAGGACAGTAATGAGGGGGGGTACGAGAAACACCTTTTGCC
TGTCTGA
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Synonyms
Publications