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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr2 | genome | chr2:240231..243245 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G00720.2 vs.
Match: EWM30572.1 (glycosyl family 5 [Nannochloropsis gaditana]) HSP 1 Score: 508.1 bits (1307), Expect = 3.000e-140 Identity = 254/428 (59.35%), Postives = 313/428 (73.13%), Query Frame = 0
Query: 10 EATPTLPL--SGMN-TSDSTEASPLHCRRQWAIKRHILSLLVTAPLLLMLLLQDVTPPT-------KMHRLLLQQPQLNKDGGSEMTREIATDFVMRKGDQLLLHGAPFRFISFNVPNLHVVEDESWHRASLWEQEDALQTIARMGGQVVRTYPLSIVGGLNNGTYTHVLGKGLYNEALLCDLDQLLVVADRLNVRLIIPFIDHWEWWGGIPQFTKLYNASFGDFYRSSEVKKGFKDLVNHVIMRRNTLTGRLYRDDPAILAWESGNELDYVDMD----EDRLSLP--LPSRGEMDKWMSELAAYIKGLDPNHLIVDGRLLNDREVSKVQLEDPHIDLISDHFYPNAANITFEERLEHVVSFTKGHKPFMVGEFGLVTPELVDVLAKRVIAEPAVAGALLWSLRSHNVNGGFYWHHEYDNYWAYHYPG 422
+ PTLP +G +++T P + + I ++T P L MLL +V +HR L + ++ FV+RK D+L L+G FRFISFNVPNLHVVEDE+WHR S WEQEDAL+TI+RMGGQVVR YP+SIVGGLNNGTYTH+LGKG+YNEAL DLD+LLVVA RL +R+IIPFIDHWEWWGG+ QF +L+NASF DFY S +K GF D V +++MR+NTLTG+LYRDDP ILAWE+GNELDYV+ D LS P LPS MDKW SELAA++K DPNHL++DGRLLN+R+VS++QL DPHIDLISDHFYPN + +FE RL ++SF+K HKPF+VGEFG+V+ + +D LAKRVI EPAVAGALLWSLRSH+ GGFYWH+EYD++WAYHY G
Sbjct: 13 QVAPTLPFVRNGFQCVNEATMVQPCQNSTRKKYRCFIQLAILTIPAL-MLLFPEVKDRLGSSGFFPSVHRNLKHDMHSSAAKSFHGAKDALDQFVVRKKDRLFLNGEAFRFISFNVPNLHVVEDETWHRVSQWEQEDALETISRMGGQVVRIYPMSIVGGLNNGTYTHILGKGMYNEALFQDLDRLLVVAHRLEIRVIIPFIDHWEWWGGVSQFARLFNASFSDFYESPLIKAGFLDFVEYLLMRKNTLTGQLYRDDPTILAWETGNELDYVNDDTPHTNTHLSAPLMLPSLAVMDKWTSELAAFLKKRDPNHLVIDGRLLNNRDVSRMQLLDPHIDLISDHFYPN-TDFSFEARLTRMLSFSKRHKPFLVGEFGMVSSQTMDALAKRVIEEPAVAGALLWSLRSHSAQGGFYWHYEYDDFWAYHYLG 438
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G00720.2 ID=NO02G00720.2|Name=NO02G00720.2|organism=Nannochloropsis oceanica|type=mRNA|length=2925bp
ACAGGAGCCAGGGTCTTCTCGATAGGCTGGGATTGTTGTCGTCTCGGGTT
GACTTAGCTGTTTGCTCTGAAAGAGACGAAGGGCCTGCATAAGCTATGAC
GCCCATACAGCTCCTATGGACAGAAGCCACGCCCACTCTGCCCTTAAGCG
GGATGAATACCTCCGACAGCACCGAGGCCTCGCCCCTCCACTGCCGCCGG
CAATGGGCCATCAAACGACACATCTTGTCCCTCCTCGTCACCGCTCCATT
GCTTTTAATGTTGCTGCTGCAAGACGTCACGCCCCCTACAAAGATGCACC
GCCTTCTGTTGCAGCAGCCGCAGCTCAACAAAGACGGAGGTAGCGAGATG
ACCAGAGAAATCGCGACGGATTTTGTCATGCGGAAAGGTGACCAGCTGCT
TTTGCACGGCGCACCCTTTCGCTTCATTTCTTTCAATGTGCCGAACTTGC
ACGTGGTCGAGGACGAGAGCTGGCATCGTGCCTCACTGTGGGAGCAGGAG
GACGCGCTGCAGACCATTGCGCGGATGGGTGGGCAGGTAGTGCGCACATA
CCCCCTGTCGATCGTGGGAGGGCTGAACAACGGGACTTACACGCACGTGC
TTGGGAAAGGGTTGTACAACGAAGCTCTTCTCTGTGACCTGGATCAGCTG
CTAGTGGTGGCGGATCGGTTGAACGTCCGCTTGATCATCCCTTTCATCGA
CCATTGGGAGTGGTGGGGAGGCATCCCGCAGTTTACCAAGCTGTACAATG
CATCGTTCGGAGATTTTTATCGTTCTTCGGAGGTCAAGAAGGGCTTTAAG
GACCTGGTCAATCATGTGATTATGCGGAGGAACACCTTGACTGGTCGATT
GTACCGGGATGACCCTGCCATTTTGGCGTGGGAGAGCGGGAATGAATTGG
ATTACGTAGATATGGATGAGGATAGGCTGAGCTTGCCCTTGCCAAGCCGC
GGGGAAATGGACAAGTGGATGAGTGAATTGGCGGCATATATCAAAGGATT
GGATCCGAATCATTTGATTGTCGATGGCCGATTGCTCAACGACCGGGAAG
TGAGTAAGGTGCAGCTGGAAGACCCCCACATTGACTTGATTTCAGATCAT
TTCTACCCTAATGCGGCGAACATTACTTTCGAAGAGCGGCTCGAGCACGT
GGTCTCGTTCACAAAAGGTCATAAGCCTTTTATGGTGGGGGAGTTTGGGC
TGGTGACCCCTGAATTGGTGGACGTGCTTGCAAAGCGCGTCATTGCTGAG
CCGGCGGTAGCGGGGGCGTTGCTATGGTCCTTGCGCTCGCACAACGTCAA
TGGTGGATTTTATTGGCATCACGAATACGACAATTACTGGGCGTACCACT
ATCCGGGTAAAATACAGACAAAATACTGCTCGTTATCTGTTCTACTAATT
TCTATGACCCTCTCGTCGTCGAAAAGTGAATTTCAAATTGTGCACTCATC
GGCAACCTATCCCCTTTTTTGCCTTTCCATCTCTACACCCTACACAATCA
CACGCAGGCTTCACCTCCAACTCAACTGACTGCGAAAAGGATATCATGGT
CATCATGGAAAAGCATGCCTATGCTATCCAAGGTCTGCCTGTCCCATCCG
CCTCCGTGCCAACCCGCCCCGAGATGATTGAAGGGAGCAGCACCGAGGCT
CTTGCGTGGCGGGGGGCTGTCGGCGCGCAGTTCTACGAGCTGGAGCGACA
GGAGGTGATGGAAATGCAGGAGGAGACAGGGGGTTTGCCAGAGAAAGGAG
CAGCTGGAGCACCATCGCTCAAGATTTCAGCAGGCTTGAGGAGTGGAGGG
AAGTGGGTCAAGGTCTCGGACAAGCTACTGGATAGCACCAATCCCTACAT
CCCATTCAACGATTCGACGGCCCAGCCCGGCAAGACTTACCGCTACCGTA
TATACGGCGTCAATGATGCAGGCCAAAGCGTCGCTTCTTCCCCTTTAATG
ATAACTGCCTCTGTCGCTCCTGCGTCCTCCCCTCCCTCTTCCTCTTCTCC
TCCTCCTCCTTCTCCTTCTTCTCCTCCTTCTCCTTCTCCTCCTCCTCCTC
TTCCTTCTCCTCTCCACCTCCCACCGCCGCGGGATCAAGTCCCCCCTTCT
CTTTCCACGCCGGCGATTGTGTCTTTTGCGCCTTTCAAGCCGGAGCAAGC
ACCTGTCTCGACACACACATCAGAGACAACAGCAGCAGCAGCGGCAGCTT
TGACTCGACCAACTTCCTTGCGTCCGATACCTGTCTCGAAAGAAGCACCG
GCGCCGTAGGAAATTCAATAGATGATCGTGAGTGGAGCACAAACGGGCCT
GTGAGATAAGGATGAGAATGAGTGTGGATTGGGAAATGTTGTTGAAAAGA
AAAGGATGAAGGATGGAGGGAAAGGTAGACGATGATCGCTAGGAACAATA
ACGCAATTTTAGTGATTGCCGATAGTAGCAGCAACAAATAAGATTGCCAA
TTGCAGCTGCAACAAAAGTATCAGCTCCAGAAGCGACGCTGGCGAAAGGT
GAGGCAGAGACACATAGTTGAAGTCTATGAGTTAAATGGTCTTGATTGCT
AAGTATGCAATGGTCTTGATGAGGAGCAAAGAAGGCAGGAACTATCGAGG
TTTAATCACCAAGTGAGCCATTATGAGGGGAAAGCTTTCGAAAATTATCT
CCGTATCAGTAATGCCATATAGCAGACTAGATTTTAAAAGTACATGTTGC
AATGTACGTATGCCCCAAAGCGTCAGATGACGTCTTAAAAAATAGATAAA
GACCAGGGAGCGCGTGACAATCGTGTATTTCCACGCGGTGCCATGGCAGG
AAACACTCTCGAAATGCCAGTCCCGCTTCCTCCACTAGCACTGAAATGAG
GTTGAAAATATGATCAAGCGAGGGGCGCTCCTTGTTCTCTAGAATACCCC
TTGCAAGGGTGAGCAACGATGGTGA back to topprotein sequence of NO02G00720.2 >NO02G00720.2-protein ID=NO02G00720.2-protein|Name=NO02G00720.2|organism=Nannochloropsis oceanica|type=polypeptide|length=478bp
MTPIQLLWTEATPTLPLSGMNTSDSTEASPLHCRRQWAIKRHILSLLVTA
PLLLMLLLQDVTPPTKMHRLLLQQPQLNKDGGSEMTREIATDFVMRKGDQ
LLLHGAPFRFISFNVPNLHVVEDESWHRASLWEQEDALQTIARMGGQVVR
TYPLSIVGGLNNGTYTHVLGKGLYNEALLCDLDQLLVVADRLNVRLIIPF
IDHWEWWGGIPQFTKLYNASFGDFYRSSEVKKGFKDLVNHVIMRRNTLTG
RLYRDDPAILAWESGNELDYVDMDEDRLSLPLPSRGEMDKWMSELAAYIK
GLDPNHLIVDGRLLNDREVSKVQLEDPHIDLISDHFYPNAANITFEERLE
HVVSFTKGHKPFMVGEFGLVTPELVDVLAKRVIAEPAVAGALLWSLRSHN
VNGGFYWHHEYDNYWAYHYPGKIQTKYCSLSVLLISMTLSSSKSEFQIVH
SSATYPLFCLSISTPYTITRRLHLQLN* back to topmRNA from alignment at chr2:240231..243245+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G00720.2 ID=NO02G00720.2|Name=NO02G00720.2|organism=Nannochloropsis oceanica|type=mRNA|length=3015bp|location=Sequence derived from alignment at chr2:240231..243245+ (Nannochloropsis oceanica)
ACAGGAGCCAGGGTCTTCTCGATAGGCTGGGATTGTTGTCGTCTCGGGTT
GACTTAGCTGTTTGCTCTGAAAGAGACGAAGGGCCTGCATAAGCTATGAC
GCCCATACAGCTCCTATGGACAGAAGCCACGCCCACTCTGCCCTTAAGCG
GGATGAATACCTCCGACAGCACCGAGGTCAGTCACTTATATGCGCATGAA
TATTAACGCTGTCGACAGATCGTTCTTACCCTGCCCCAACGCTATCTCTA
TCTTCTCTTCAAAAAGGCCTCGCCCCTCCACTGCCGCCGGCAATGGGCCA
TCAAACGACACATCTTGTCCCTCCTCGTCACCGCTCCATTGCTTTTAATG
TTGCTGCTGCAAGACGTCACGCCCCCTACAAAGATGCACCGCCTTCTGTT
GCAGCAGCCGCAGCTCAACAAAGACGGAGGTAGCGAGATGACCAGAGAAA
TCGCGACGGATTTTGTCATGCGGAAAGGTGACCAGCTGCTTTTGCACGGC
GCACCCTTTCGCTTCATTTCTTTCAATGTGCCGAACTTGCACGTGGTCGA
GGACGAGAGCTGGCATCGTGCCTCACTGTGGGAGCAGGAGGACGCGCTGC
AGACCATTGCGCGGATGGGTGGGCAGGTAGTGCGCACATACCCCCTGTCG
ATCGTGGGAGGGCTGAACAACGGGACTTACACGCACGTGCTTGGGAAAGG
GTTGTACAACGAAGCTCTTCTCTGTGACCTGGATCAGCTGCTAGTGGTGG
CGGATCGGTTGAACGTCCGCTTGATCATCCCTTTCATCGACCATTGGGAG
TGGTGGGGAGGCATCCCGCAGTTTACCAAGCTGTACAATGCATCGTTCGG
AGATTTTTATCGTTCTTCGGAGGTCAAGAAGGGCTTTAAGGACCTGGTCA
ATCATGTGATTATGCGGAGGAACACCTTGACTGGTCGATTGTACCGGGAT
GACCCTGCCATTTTGGCGTGGGAGAGCGGGAATGAATTGGATTACGTAGA
TATGGATGAGGATAGGCTGAGCTTGCCCTTGCCAAGCCGCGGGGAAATGG
ACAAGTGGATGAGTGAATTGGCGGCATATATCAAAGGATTGGATCCGAAT
CATTTGATTGTCGATGGCCGATTGCTCAACGACCGGGAAGTGAGTAAGGT
GCAGCTGGAAGACCCCCACATTGACTTGATTTCAGATCATTTCTACCCTA
ATGCGGCGAACATTACTTTCGAAGAGCGGCTCGAGCACGTGGTCTCGTTC
ACAAAAGGTCATAAGCCTTTTATGGTGGGGGAGTTTGGGCTGGTGACCCC
TGAATTGGTGGACGTGCTTGCAAAGCGCGTCATTGCTGAGCCGGCGGTAG
CGGGGGCGTTGCTATGGTCCTTGCGCTCGCACAACGTCAATGGTGGATTT
TATTGGCATCACGAATACGACAATTACTGGGCGTACCACTATCCGGGTAA
AATACAGACAAAATACTGCTCGTTATCTGTTCTACTAATTTCTATGACCC
TCTCGTCGTCGAAAAGTGAATTTCAAATTGTGCACTCATCGGCAACCTAT
CCCCTTTTTTGCCTTTCCATCTCTACACCCTACACAATCACACGCAGGCT
TCACCTCCAACTCAACTGACTGCGAAAAGGATATCATGGTCATCATGGAA
AAGCATGCCTATGCTATCCAAGGTCTGCCTGTCCCATCCGCCTCCGTGCC
AACCCGCCCCGAGATGATTGAAGGGAGCAGCACCGAGGCTCTTGCGTGGC
GGGGGGCTGTCGGCGCGCAGTTCTACGAGCTGGAGCGACAGGAGGTGATG
GAAATGCAGGAGGAGACAGGGGGTTTGCCAGAGAAAGGAGCAGCTGGAGC
ACCATCGCTCAAGATTTCAGCAGGCTTGAGGAGTGGAGGGAAGTGGGTCA
AGGTCTCGGACAAGCTACTGGATAGCACCAATCCCTACATCCCATTCAAC
GATTCGACGGCCCAGCCCGGCAAGACTTACCGCTACCGTATATACGGCGT
CAATGATGCAGGCCAAAGCGTCGCTTCTTCCCCTTTAATGATAACTGCCT
CTGTCGCTCCTGCGTCCTCCCCTCCCTCTTCCTCTTCTCCTCCTCCTCCT
TCTCCTTCTTCTCCTCCTTCTCCTTCTCCTCCTCCTCCTCTTCCTTCTCC
TCTCCACCTCCCACCGCCGCGGGATCAAGTCCCCCCTTCTCTTTCCACGC
CGGCGATTGTGTCTTTTGCGCCTTTCAAGCCGGAGCAAGCACCTGTCTCG
ACACACACATCAGAGACAACAGCAGCAGCAGCGGCAGCTTTGACTCGACC
AACTTCCTTGCGTCCGATACCTGTCTCGAAAGAAGCACCGGCGCCGTAGG
AAATTCAATAGATGATCGTGAGTGGAGCACAAACGGGCCTGTGAGATAAG
GATGAGAATGAGTGTGGATTGGGAAATGTTGTTGAAAAGAAAAGGATGAA
GGATGGAGGGAAAGGTAGACGATGATCGCTAGGAACAATAACGCAATTTT
AGTGATTGCCGATAGTAGCAGCAACAAATAAGATTGCCAATTGCAGCTGC
AACAAAAGTATCAGCTCCAGAAGCGACGCTGGCGAAAGGTGAGGCAGAGA
CACATAGTTGAAGTCTATGAGTTAAATGGTCTTGATTGCTAAGTATGCAA
TGGTCTTGATGAGGAGCAAAGAAGGCAGGAACTATCGAGGTTTAATCACC
AAGTGAGCCATTATGAGGGGAAAGCTTTCGAAAATTATCTCCGTATCAGT
AATGCCATATAGCAGACTAGATTTTAAAAGTACATGTTGCAATGTACGTA
TGCCCCAAAGCGTCAGATGACGTCTTAAAAAATAGATAAAGACCAGGGAG
CGCGTGACAATCGTGTATTTCCACGCGGTGCCATGGCAGGAAACACTCTC
GAAATGCCAGTCCCGCTTCCTCCACTAGCACTGAAATGAGGTTGAAAATA
TGATCAAGCGAGGGGCGCTCCTTGTTCTCTAGAATACCCCTTGCAAGGGT
GAGCAACGATGGTGA back to topCoding sequence (CDS) from alignment at chr2:240231..243245+ >NO02G00720.2 ID=NO02G00720.2|Name=NO02G00720.2|organism=Nannochloropsis oceanica|type=CDS|length=1434bp|location=Sequence derived from alignment at chr2:240231..243245+ (Nannochloropsis oceanica)
ATGACGCCCATACAGCTCCTATGGACAGAAGCCACGCCCACTCTGCCCTT
AAGCGGGATGAATACCTCCGACAGCACCGAGGCCTCGCCCCTCCACTGCC
GCCGGCAATGGGCCATCAAACGACACATCTTGTCCCTCCTCGTCACCGCT
CCATTGCTTTTAATGTTGCTGCTGCAAGACGTCACGCCCCCTACAAAGAT
GCACCGCCTTCTGTTGCAGCAGCCGCAGCTCAACAAAGACGGAGGTAGCG
AGATGACCAGAGAAATCGCGACGGATTTTGTCATGCGGAAAGGTGACCAG
CTGCTTTTGCACGGCGCACCCTTTCGCTTCATTTCTTTCAATGTGCCGAA
CTTGCACGTGGTCGAGGACGAGAGCTGGCATCGTGCCTCACTGTGGGAGC
AGGAGGACGCGCTGCAGACCATTGCGCGGATGGGTGGGCAGGTAGTGCGC
ACATACCCCCTGTCGATCGTGGGAGGGCTGAACAACGGGACTTACACGCA
CGTGCTTGGGAAAGGGTTGTACAACGAAGCTCTTCTCTGTGACCTGGATC
AGCTGCTAGTGGTGGCGGATCGGTTGAACGTCCGCTTGATCATCCCTTTC
ATCGACCATTGGGAGTGGTGGGGAGGCATCCCGCAGTTTACCAAGCTGTA
CAATGCATCGTTCGGAGATTTTTATCGTTCTTCGGAGGTCAAGAAGGGCT
TTAAGGACCTGGTCAATCATGTGATTATGCGGAGGAACACCTTGACTGGT
CGATTGTACCGGGATGACCCTGCCATTTTGGCGTGGGAGAGCGGGAATGA
ATTGGATTACGTAGATATGGATGAGGATAGGCTGAGCTTGCCCTTGCCAA
GCCGCGGGGAAATGGACAAGTGGATGAGTGAATTGGCGGCATATATCAAA
GGATTGGATCCGAATCATTTGATTGTCGATGGCCGATTGCTCAACGACCG
GGAAGTGAGTAAGGTGCAGCTGGAAGACCCCCACATTGACTTGATTTCAG
ATCATTTCTACCCTAATGCGGCGAACATTACTTTCGAAGAGCGGCTCGAG
CACGTGGTCTCGTTCACAAAAGGTCATAAGCCTTTTATGGTGGGGGAGTT
TGGGCTGGTGACCCCTGAATTGGTGGACGTGCTTGCAAAGCGCGTCATTG
CTGAGCCGGCGGTAGCGGGGGCGTTGCTATGGTCCTTGCGCTCGCACAAC
GTCAATGGTGGATTTTATTGGCATCACGAATACGACAATTACTGGGCGTA
CCACTATCCGGGTAAAATACAGACAAAATACTGCTCGTTATCTGTTCTAC
TAATTTCTATGACCCTCTCGTCGTCGAAAAGTGAATTTCAAATTGTGCAC
TCATCGGCAACCTATCCCCTTTTTTGCCTTTCCATCTCTACACCCTACAC
AATCACACGCAGGCTTCACCTCCAACTCAACTGA back to top
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