NO02G00710.1, NO02G00710.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G00710.1
Unique NameNO02G00710.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length996
Alignment locationchr2:238600..239595 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:238600..239595 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G00710.1 vs.
Match: EWM30576.1 (deoxyribonuclease tatdn1-like protein [Nannochloropsis gaditana])

HSP 1 Score: 496.1 bits (1276), Expect = 8.300e-137
Identity = 231/313 (73.80%), Postives = 260/313 (83.07%), Query Frame = 0 
Query:    1 MPFIDIGCNLTDSMYQGKYNNSQKHPPDLDHVLARAWEVGLSHVVITAGTLDEARKALELASDDRRLFTTVGVHPTRCKELVEAEEGMAAYIDTLLDLAREGQKNGKVVAIGECGLDYDRLGFCDQATQLAGFEAQFALAEETGLPMFLHNRNCANDFVQTLQRHRHRFSQGVVHSFTGPPAEVKALLSMERVYIGLNGCSLKTEEQLTTIQTHLPLGRTLLETDAPWCDVRPTHAGARYLQS--REEKGMFGTVKKEKWSKDKCVKGRNEPCHIREVAAVLAGVHGVPLEQVIEVCYANTLTCFPGLVRQED 312
            MPF+DIGCNLTD MYQGKYN SQKHPPDLD VLARAWE GLSH++ITAGT +EAR AL LAS+D RLF TVGVHPTRCKELVEAE+GMAA++D LLDL ++GQK G VVAIGECGLDYDRL FC+++TQL GFEAQF LAEETGLPMFLHNRNC  DFV  LQ+HRHRFSQGVVHSFTGP  E + LLSME+VYIGLNGCS KT +QL TI+  +PL +TLLETDAPWCDVRPTHAG ++L S    E   F TVKKEKWS+DKCVKGRNEPCHIR VA +LAG+H   L  V EVCY N++ CFPGL  + +
Sbjct:    1 MPFVDIGCNLTDHMYQGKYNGSQKHPPDLDRVLARAWEAGLSHIIITAGTANEARTALNLASEDPRLFATVGVHPTRCKELVEAEDGMAAHMDELLDLIKDGQKTGNVVAIGECGLDYDRLHFCEKSTQLKGFEAQFTLAEETGLPMFLHNRNCGEDFVHILQQHRHRFSQGVVHSFTGPCTEAQTLLSMEKVYIGLNGCSFKTGDQLMTIKNSIPLEKTLLETDAPWCDVRPTHAGTKFLTSGGSAEVATFETVKKEKWSRDKCVKGRNEPCHIRGVAQILAGIHDTTLAHVEEVCYENSMACFPGLTLRNE 313
The following BLAST results are available for this feature:
BLAST of NO02G00710.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30576.18.300e-13773.80deoxyribonuclease tatdn1-like protein [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G00710NO02G00710Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G00710.1NO02G00710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G00710.1.cds1NO02G00710.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G00710.1 ID=NO02G00710.1|Name=NO02G00710.1|organism=Nannochloropsis oceanica|type=mRNA|length=996bp
ATGCCGTTTATCGACATAGGCTGCAACCTGACCGACAGCATGTACCAAGG
CAAGTACAATAACAGCCAGAAGCACCCGCCAGACTTGGACCATGTGCTGG
CACGAGCCTGGGAGGTGGGTTTGAGCCACGTTGTCATCACGGCCGGCACT
TTGGACGAGGCGCGCAAGGCTTTGGAATTAGCAAGCGACGATCGTCGTCT
ATTCACCACCGTTGGCGTGCACCCCACGCGTTGCAAAGAGCTTGTGGAGG
CCGAAGAAGGTATGGCAGCATACATCGACACCTTGTTGGATTTAGCCAGG
GAAGGCCAAAAAAATGGCAAAGTTGTGGCCATTGGCGAGTGTGGCTTGGA
TTATGATCGACTTGGTTTTTGCGACCAAGCCACTCAACTCGCGGGATTCG
AAGCGCAGTTTGCCTTGGCGGAGGAGACGGGCCTACCCATGTTTTTACAC
AACCGCAATTGTGCGAACGATTTTGTCCAGACGCTGCAAAGACATCGACA
CCGATTCAGCCAGGGCGTGGTTCATTCTTTTACAGGACCCCCCGCAGAAG
TGAAGGCATTGCTAAGTATGGAAAGGGTGTATATTGGATTGAACGGGTGC
TCTCTCAAAACGGAGGAGCAGCTCACGACCATCCAAACTCATCTTCCGCT
GGGACGCACGCTGCTGGAGACGGATGCCCCGTGGTGCGATGTGCGGCCCA
CGCATGCAGGTGCCAGGTATTTGCAGTCACGGGAGGAGAAGGGCATGTTT
GGTACGGTCAAGAAGGAGAAATGGTCCAAGGATAAGTGTGTAAAAGGACG
GAATGAGCCATGTCACATCCGAGAGGTGGCAGCTGTTCTGGCGGGCGTGC
ATGGTGTCCCCCTTGAGCAGGTAATCGAGGTATGCTACGCCAACACTCTT
ACCTGCTTTCCCGGGCTGGTGCGTCAGGAGGACGCAAAGGAGGAGGAAGG
ACAAAGAGAAGGGACACAAAACCAAGTCGATATAGAAAGCAAATGA
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protein sequence of NO02G00710.1

>NO02G00710.1-protein ID=NO02G00710.1-protein|Name=NO02G00710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=332bp
MPFIDIGCNLTDSMYQGKYNNSQKHPPDLDHVLARAWEVGLSHVVITAGT
LDEARKALELASDDRRLFTTVGVHPTRCKELVEAEEGMAAYIDTLLDLAR
EGQKNGKVVAIGECGLDYDRLGFCDQATQLAGFEAQFALAEETGLPMFLH
NRNCANDFVQTLQRHRHRFSQGVVHSFTGPPAEVKALLSMERVYIGLNGC
SLKTEEQLTTIQTHLPLGRTLLETDAPWCDVRPTHAGARYLQSREEKGMF
GTVKKEKWSKDKCVKGRNEPCHIREVAAVLAGVHGVPLEQVIEVCYANTL
TCFPGLVRQEDAKEEEGQREGTQNQVDIESK*
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mRNA from alignment at chr2:238600..239595-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G00710.1 ID=NO02G00710.1|Name=NO02G00710.1|organism=Nannochloropsis oceanica|type=mRNA|length=996bp|location=Sequence derived from alignment at chr2:238600..239595- (Nannochloropsis oceanica)
ATGCCGTTTATCGACATAGGCTGCAACCTGACCGACAGCATGTACCAAGG
CAAGTACAATAACAGCCAGAAGCACCCGCCAGACTTGGACCATGTGCTGG
CACGAGCCTGGGAGGTGGGTTTGAGCCACGTTGTCATCACGGCCGGCACT
TTGGACGAGGCGCGCAAGGCTTTGGAATTAGCAAGCGACGATCGTCGTCT
ATTCACCACCGTTGGCGTGCACCCCACGCGTTGCAAAGAGCTTGTGGAGG
CCGAAGAAGGTATGGCAGCATACATCGACACCTTGTTGGATTTAGCCAGG
GAAGGCCAAAAAAATGGCAAAGTTGTGGCCATTGGCGAGTGTGGCTTGGA
TTATGATCGACTTGGTTTTTGCGACCAAGCCACTCAACTCGCGGGATTCG
AAGCGCAGTTTGCCTTGGCGGAGGAGACGGGCCTACCCATGTTTTTACAC
AACCGCAATTGTGCGAACGATTTTGTCCAGACGCTGCAAAGACATCGACA
CCGATTCAGCCAGGGCGTGGTTCATTCTTTTACAGGACCCCCCGCAGAAG
TGAAGGCATTGCTAAGTATGGAAAGGGTGTATATTGGATTGAACGGGTGC
TCTCTCAAAACGGAGGAGCAGCTCACGACCATCCAAACTCATCTTCCGCT
GGGACGCACGCTGCTGGAGACGGATGCCCCGTGGTGCGATGTGCGGCCCA
CGCATGCAGGTGCCAGGTATTTGCAGTCACGGGAGGAGAAGGGCATGTTT
GGTACGGTCAAGAAGGAGAAATGGTCCAAGGATAAGTGTGTAAAAGGACG
GAATGAGCCATGTCACATCCGAGAGGTGGCAGCTGTTCTGGCGGGCGTGC
ATGGTGTCCCCCTTGAGCAGGTAATCGAGGTATGCTACGCCAACACTCTT
ACCTGCTTTCCCGGGCTGGTGCGTCAGGAGGACGCAAAGGAGGAGGAAGG
ACAAAGAGAAGGGACACAAAACCAAGTCGATATAGAAAGCAAATGA
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Coding sequence (CDS) from alignment at chr2:238600..239595-

>NO02G00710.1 ID=NO02G00710.1|Name=NO02G00710.1|organism=Nannochloropsis oceanica|type=CDS|length=996bp|location=Sequence derived from alignment at chr2:238600..239595- (Nannochloropsis oceanica)
ATGCCGTTTATCGACATAGGCTGCAACCTGACCGACAGCATGTACCAAGG
CAAGTACAATAACAGCCAGAAGCACCCGCCAGACTTGGACCATGTGCTGG
CACGAGCCTGGGAGGTGGGTTTGAGCCACGTTGTCATCACGGCCGGCACT
TTGGACGAGGCGCGCAAGGCTTTGGAATTAGCAAGCGACGATCGTCGTCT
ATTCACCACCGTTGGCGTGCACCCCACGCGTTGCAAAGAGCTTGTGGAGG
CCGAAGAAGGTATGGCAGCATACATCGACACCTTGTTGGATTTAGCCAGG
GAAGGCCAAAAAAATGGCAAAGTTGTGGCCATTGGCGAGTGTGGCTTGGA
TTATGATCGACTTGGTTTTTGCGACCAAGCCACTCAACTCGCGGGATTCG
AAGCGCAGTTTGCCTTGGCGGAGGAGACGGGCCTACCCATGTTTTTACAC
AACCGCAATTGTGCGAACGATTTTGTCCAGACGCTGCAAAGACATCGACA
CCGATTCAGCCAGGGCGTGGTTCATTCTTTTACAGGACCCCCCGCAGAAG
TGAAGGCATTGCTAAGTATGGAAAGGGTGTATATTGGATTGAACGGGTGC
TCTCTCAAAACGGAGGAGCAGCTCACGACCATCCAAACTCATCTTCCGCT
GGGACGCACGCTGCTGGAGACGGATGCCCCGTGGTGCGATGTGCGGCCCA
CGCATGCAGGTGCCAGGTATTTGCAGTCACGGGAGGAGAAGGGCATGTTT
GGTACGGTCAAGAAGGAGAAATGGTCCAAGGATAAGTGTGTAAAAGGACG
GAATGAGCCATGTCACATCCGAGAGGTGGCAGCTGTTCTGGCGGGCGTGC
ATGGTGTCCCCCTTGAGCAGGTAATCGAGGTATGCTACGCCAACACTCTT
ACCTGCTTTCCCGGGCTGGTGCGTCAGGAGGACGCAAAGGAGGAGGAAGG
ACAAAGAGAAGGGACACAAAACCAAGTCGATATAGAAAGCAAATGA
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Synonyms
Publications