|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr2 | genome | chr2:224066..226808 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G00650.1 vs.
Match: EWM30599.1 (core-2 i-branching enzyme [Nannochloropsis gaditana]) HSP 1 Score: 336.7 bits (862), Expect = 1.300e-88 Identity = 165/226 (73.01%), Postives = 190/226 (84.07%), Query Frame = 0
Query: 28 RMALVLLLSLAGDGQLLA--SSSSVGACRADATPLPSYEDVGLIDRPSPGKVAYGVMVYQQQNKTVADVLGQFTRLFDAIYFPSFTFVVHVDIKSDPALIDLITEYVQGFE-QASMIPSVSVSWGGVTVVERTLALMQAALERDQEWEYFVNIGQEDYPLERPEVIRNFLAHSTPPATNFIYCWDLRGHDFFGQWEHHQGRVSRVFVDLFNGKSREVDGVSRPTPK 251
R A +LLL L+GDGQL S++ G CRAD SY++VGL+DRPSPGKVAYGVMVYQ+QNKTV+DV QFTRLFDAIY P+FT VVHVDIKS+PALI+ IT+YV+ QAS IPSVSVSWGG+TVVERTLALMQAALE D EWEYFVNIGQEDYPL+ P I+ +LAH+ PPATNFIYCWDLRGHDFFGQWEHH+GRVS+VFVD+F+G+SREV G+ R PK
Sbjct: 23 RTASLLLLFLSGDGQLFVHRSANYKGTCRADTLSNVSYKEVGLVDRPSPGKVAYGVMVYQRQNKTVSDVFDQFTRLFDAIYSPNFTCVVHVDIKSEPALIEKITDYVKKHAPQASTIPSVSVSWGGITVVERTLALMQAALESDPEWEYFVNIGQEDYPLQSPAAIQEYLAHAVPPATNFIYCWDLRGHDFFGQWEHHEGRVSKVFVDMFDGRSREVRGLPRSPPK 248
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G00650.1 ID=NO02G00650.1|Name=NO02G00650.1|organism=Nannochloropsis oceanica|type=mRNA|length=2170bp
CGGGGAGGTGGGCTGCTCCGCTTGGTTTCAAGCAAATATCAAGCCTCGGC
TGTAAAATCTTCATCGTCTCAAGCAGGATGTCCTCCTCCTCATCTTCTTT
CTCGTCATCCCTACGGATACAATGCACATCACGCACACAAGCCTGGTCAC
AGCTGCTGCGACGGGGCAGTGAGACGGTAGGGCTTCGCCAGGACCAGGGC
CGACATGGGCGCCAAAGTTTCGTGTTGTGTCCATCACACAGTGGTCCGAT
GCCTCTCCAGACTCGCACAGGCGTCCCTGATCTGAATCTCAAACGATTTA
AACAAACACAGCCGCGTATGCCAGACGATGGCCACGGCCATTTGCGGGAA
ATCAAGCCAATCCAGCCTAAACAACTTCGTCGCCTCCCCCATGTGTGCAT
CACTCGTCCGCATGGCGCTTGTCCTCCTCCTTTCTCTTGCGGGGGACGGG
CAGCTTTTAGCAAGCAGCAGCAGTGTGGGGGCGTGCCGAGCAGACGCAAC
CCCTTTACCCTCCTACGAAGACGTGGGCCTGATCGACCGCCCCAGTCCCG
GCAAGGTCGCCTACGGCGTGATGGTCTACCAACAGCAAAACAAGACGGTT
GCCGACGTCCTGGGCCAATTCACCCGGTTGTTCGACGCCATCTACTTTCC
GAGCTTCACTTTCGTCGTGCACGTGGACATCAAAAGCGACCCGGCTTTGA
TTGATCTCATCACGGAGTACGTGCAGGGGTTTGAGCAGGCCAGCATGATT
CCAAGCGTGAGCGTTAGCTGGGGCGGGGTGACGGTTGTGGAGCGGACGTT
GGCCTTGATGCAGGCGGCGTTAGAGAGGGACCAGGAGTGGGAATATTTTG
TGAATATTGGGCAGGAGGACTACCCGTTGGAAAGGCCTGAGGTCATCCGG
AACTTTCTTGCGCATTCCACTCCTCCTGCAACGAACTTCATTTATTGCTG
GGACTTGCGTGGGCATGACTTTTTCGGACAGTGGGAGCATCACCAAGGGA
GGGTCTCGAGGGTGTTTGTCGACTTGTTTAATGGCAAGAGCCGGGAGGTA
GATGGGGTGTCACGCCCCACACCCAAGGAATACACGTTCTACAAATCTCT
CCAACAAACTGCCCTCTCCCGCGCCTTCGTCTCCACGGCAGTCTACTCTC
CCGAAGCCCGCCGTCTCCTGCTCTACCTCGCCACCTCTGAAGCCCCCGAC
GAAATCTTCTTTCCCACCCTTCTCCACCTCCCCCCCTTCTCTGCCCACGC
CTCTCGCGCCACCTGCAATGGTACCCTTCATTTCTCCCACTGGATCCGAC
CGGGCGGAAGTTGGCACCCGGAGTACCTCACCCCCATCCACCTCCCCCTG
CTGCTTGAGAAAATGCGCGGCGGAAGCGGCAGTAGCAGCAGTAGCGGCAG
CGGCTTGCCTACGTTCTGGGCCCGGAAATTTGATGTTGGGAAGGGGTCGA
GCACCTTGATGGACACGTTGGACTTTCAGAGAGAGTGTCGACACGCCTTT
GACTACGAAGAGGAGGACATGGACTGGGCGCCGGCTATTATTTTCGCCAA
GGAGATGGAGGGCAAGATTGAAGTGAGGGAGGGAGGGCGGGAGGCCGGAG
AGGAAGGGGCGGAGGACAGGTGTGTTTATCGGGAGGTGAGGTCGGAGGGG
CATTTGGTGACCGGAAAGGATATGCTGGCTCATCTCGATAAGGCTAGAAG
GAGTCATGATGCCGAGGCCATTATGCGCTTTATCGTATCCGTAGAGAGAG
AGATGAGCGCGCATACGGACCACTATGCTCACCCGCAGTGGCAGGAGCAG
AGGCGGAGGTTGCAGCAGCATCGGGAAGAGGCGGAGAGGCAATTGTTGCC
GGGCACTCGACTCTTGGGAGCAGCGGGGAATGAAGGGAGTGAGTGGGTGA
GGTGAATGAGACGCTCGAGATTTGTTTGTTAATGTGTGTGTATACGTGTG
TGTGTGTACACGTGTGTGTGTACATGTGTGTGTATATGTGTGTGTGTACG
TGTGTGTCTTGTGGAATAAGAATGAAAGTGTGTATGAAGGAGATTGGGGG
GGGGGGAAGGAGACGGAAAACTAGCAAGTGTAGACTAACAAGCCCTCGCG
GGAGCTGAAATCATGTAGAAAGGTGCTAGAGCAAAAAATTCGAAGGCATG
TGGGACGAGAGATAATGCAC back to topprotein sequence of NO02G00650.1 >NO02G00650.1-protein ID=NO02G00650.1-protein|Name=NO02G00650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=526bp
MATAICGKSSQSSLNNFVASPMCASLVRMALVLLLSLAGDGQLLASSSSV
GACRADATPLPSYEDVGLIDRPSPGKVAYGVMVYQQQNKTVADVLGQFTR
LFDAIYFPSFTFVVHVDIKSDPALIDLITEYVQGFEQASMIPSVSVSWGG
VTVVERTLALMQAALERDQEWEYFVNIGQEDYPLERPEVIRNFLAHSTPP
ATNFIYCWDLRGHDFFGQWEHHQGRVSRVFVDLFNGKSREVDGVSRPTPK
EYTFYKSLQQTALSRAFVSTAVYSPEARRLLLYLATSEAPDEIFFPTLLH
LPPFSAHASRATCNGTLHFSHWIRPGGSWHPEYLTPIHLPLLLEKMRGGS
GSSSSSGSGLPTFWARKFDVGKGSSTLMDTLDFQRECRHAFDYEEEDMDW
APAIIFAKEMEGKIEVREGGREAGEEGAEDRCVYREVRSEGHLVTGKDML
AHLDKARRSHDAEAIMRFIVSVEREMSAHTDHYAHPQWQEQRRRLQQHRE
EAERQLLPGTRLLGAAGNEGSEWVR* back to topmRNA from alignment at chr2:224066..226808+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G00650.1 ID=NO02G00650.1|Name=NO02G00650.1|organism=Nannochloropsis oceanica|type=mRNA|length=2743bp|location=Sequence derived from alignment at chr2:224066..226808+ (Nannochloropsis oceanica)
CGGGGAGGTGGGCTGCTCCGCTTGGTTTCAAGCAAATATCAAGCCTCGGC
TGTAAAATCTTCATCGTCTCAAGCAGGATGTCCTCCTCCTCATCTTCTTT
CTCGTCATCCCTACGGATACAATGCACATCACGCACACAAGCCTGGTCAC
AGCTGCTGCGACGGGGCAGTGAGACGGTAGGGCTTCGCCAGGACCAGGGC
CGACATGGGCGCCAAAGTTTCGTGTTGTGTCCATCACACAGTGGTCCGAT
GCCTCTCCAGACTCGCACAGGCGTCCCTGATCTGAATCTCAAACGATTTA
AACAAACACAGCCGCGTATGCCAGACGATGGCCACGGCCATTTGCGGGAA
ATCAAGCCAATCCAGCCTAAACAACTTCGTCGCCTCCCCCATGTGTGCAT
CACTCGTCCGCATGGCGCTTGTCCTCCTCCTTTCTCTTGCGGGGGACGGG
CAGCTTTTAGCAAGCAGCAGCAGTGTGGGGGCGTGCCGAGCAGGTAAGGC
GACTATTCTTGATTTGTCGCAAGCGATGGGTGTGGATGCGCGAAGAAATC
GTGCCGGGGAGCGCACAGTACTGGACATACCGAACTCCTTTCCCACACCT
CCACAATGGCCATACAACCGTGCATTGGACGTAAAGACACCACGATGCAC
CCAGAATATTGCCCATTCTTTCCTGTCCCTTACTACCTCATCGCCCCCCC
AAGCGGCTATGACCCTGCACTGGACATCCCTCTTCCCACACTCCCTTCTT
TCCCTCCTCTCACCCAAACACAGACGCAACCCCTTTACCCTCCTACGAAG
ACGTGGGCCTGATCGACCGCCCCAGTCCCGGCAAGGTCGCCTACGGCGTG
ATGGTCTACCAACAGCAAAACAAGACGGTTGCCGACGTCCTGGGCCAATT
CACCCGGTTGTTCGACGCCATCTACTTTCCGAGCTTCACTTTCGTCGTGC
ACGTGGACATCAAAAGCGACCCGGCTTTGATTGATCTCATCACGGAGTAC
GTGCAGGGGTTTGAGCAGGCCAGCATGATTCCAAGCGTGAGCGTTAGCTG
GGGCGGGGTGACGGTTGTGGAGCGGACGTTGGCCTTGATGCAGGCGGCGT
TAGAGAGGGACCAGGAGTGGGAATATTTTGTGAATATTGGGCAGGTATGT
AATATACATATGTGTATAGGTATATGTCTATGTATATGTCTGTGTCTGTA
GATTGATAAGATGTACGTGTTACTTTTCAATTGATTCATGCACATTTCCC
CCATCTGGCTGACTTGTAACGTTACAACAGGAGGACTACCCGTTGGAAAG
GCCTGAGGTCATCCGGAACTTTCTTGCGCATTCCACTCCTCCTGCAACGA
ACTTCATTTATTGCTGGGACTTGCGTGGGCATGACTTTTTCGGACAGTGG
GAGCATCACCAAGGGAGGGTCTCGAGGGTGTTTGTCGACTTGTTTAATGG
CAAGAGCCGGGAGGTAGATGGGGTGTCACGCCCCACACCCAAGGTAAGAA
GGAAGAAATAGAGGAAGGAGACATCGGTGCTTCAAATCTACAGACCCCGA
ACGAAATTCCAACAAGTGGTGAGGGGAAAGACGAGTCCACCTCTTCCCTC
TTTCCCTCCTTCCCTTCTTCCCTCTCTCCCTCCCTCTCCTTTTCCCTCAG
GAATACACGTTCTACAAATCTCTCCAACAAACTGCCCTCTCCCGCGCCTT
CGTCTCCACGGCAGTCTACTCTCCCGAAGCCCGCCGTCTCCTGCTCTACC
TCGCCACCTCTGAAGCCCCCGACGAAATCTTCTTTCCCACCCTTCTCCAC
CTCCCCCCCTTCTCTGCCCACGCCTCTCGCGCCACCTGCAATGGTACCCT
TCATTTCTCCCACTGGATCCGACCGGGCGGAAGTTGGCACCCGGAGTACC
TCACCCCCATCCACCTCCCCCTGCTGCTTGAGAAAATGCGCGGCGGAAGC
GGCAGTAGCAGCAGTAGCGGCAGCGGCTTGCCTACGTTCTGGGCCCGGAA
ATTTGATGTTGGGAAGGGGTCGAGCACCTTGATGGACACGTTGGACTTTC
AGAGAGAGTGTCGACACGCCTTTGACTACGAAGAGGAGGACATGGACTGG
GCGCCGGCTATTATTTTCGCCAAGGAGATGGAGGGCAAGATTGAAGTGAG
GGAGGGAGGGCGGGAGGCCGGAGAGGAAGGGGCGGAGGACAGGTGTGTTT
ATCGGGAGGTGAGGTCGGAGGGGCATTTGGTGACCGGAAAGGATATGCTG
GCTCATCTCGATAAGGCTAGAAGGAGTCATGATGCCGAGGCCATTATGCG
CTTTATCGTATCCGTAGAGAGAGAGATGAGCGCGCATACGGACCACTATG
CTCACCCGCAGTGGCAGGAGCAGAGGCGGAGGTTGCAGCAGCATCGGGAA
GAGGCGGAGAGGCAATTGTTGCCGGGCACTCGACTCTTGGGAGCAGCGGG
GAATGAAGGGAGTGAGTGGGTGAGGTGAATGAGACGCTCGAGATTTGTTT
GTTAATGTGTGTGTATACGTGTGTGTGTGTACACGTGTGTGTGTACATGT
GTGTGTATATGTGTGTGTGTACGTGTGTGTCTTGTGGAATAAGAATGAAA
GTGTGTATGAAGGAGATTGGGGGGGGGGGAAGGAGACGGAAAACTAGCAA
GTGTAGACTAACAAGCCCTCGCGGGAGCTGAAATCATGTAGAAAGGTGCT
AGAGCAAAAAATTCGAAGGCATGTGGGACGAGAGATAATGCAC back to topCoding sequence (CDS) from alignment at chr2:224066..226808+ >NO02G00650.1 ID=NO02G00650.1|Name=NO02G00650.1|organism=Nannochloropsis oceanica|type=CDS|length=1578bp|location=Sequence derived from alignment at chr2:224066..226808+ (Nannochloropsis oceanica)
ATGGCCACGGCCATTTGCGGGAAATCAAGCCAATCCAGCCTAAACAACTT
CGTCGCCTCCCCCATGTGTGCATCACTCGTCCGCATGGCGCTTGTCCTCC
TCCTTTCTCTTGCGGGGGACGGGCAGCTTTTAGCAAGCAGCAGCAGTGTG
GGGGCGTGCCGAGCAGACGCAACCCCTTTACCCTCCTACGAAGACGTGGG
CCTGATCGACCGCCCCAGTCCCGGCAAGGTCGCCTACGGCGTGATGGTCT
ACCAACAGCAAAACAAGACGGTTGCCGACGTCCTGGGCCAATTCACCCGG
TTGTTCGACGCCATCTACTTTCCGAGCTTCACTTTCGTCGTGCACGTGGA
CATCAAAAGCGACCCGGCTTTGATTGATCTCATCACGGAGTACGTGCAGG
GGTTTGAGCAGGCCAGCATGATTCCAAGCGTGAGCGTTAGCTGGGGCGGG
GTGACGGTTGTGGAGCGGACGTTGGCCTTGATGCAGGCGGCGTTAGAGAG
GGACCAGGAGTGGGAATATTTTGTGAATATTGGGCAGGAGGACTACCCGT
TGGAAAGGCCTGAGGTCATCCGGAACTTTCTTGCGCATTCCACTCCTCCT
GCAACGAACTTCATTTATTGCTGGGACTTGCGTGGGCATGACTTTTTCGG
ACAGTGGGAGCATCACCAAGGGAGGGTCTCGAGGGTGTTTGTCGACTTGT
TTAATGGCAAGAGCCGGGAGGTAGATGGGGTGTCACGCCCCACACCCAAG
GAATACACGTTCTACAAATCTCTCCAACAAACTGCCCTCTCCCGCGCCTT
CGTCTCCACGGCAGTCTACTCTCCCGAAGCCCGCCGTCTCCTGCTCTACC
TCGCCACCTCTGAAGCCCCCGACGAAATCTTCTTTCCCACCCTTCTCCAC
CTCCCCCCCTTCTCTGCCCACGCCTCTCGCGCCACCTGCAATGGTACCCT
TCATTTCTCCCACTGGATCCGACCGGGCGGAAGTTGGCACCCGGAGTACC
TCACCCCCATCCACCTCCCCCTGCTGCTTGAGAAAATGCGCGGCGGAAGC
GGCAGTAGCAGCAGTAGCGGCAGCGGCTTGCCTACGTTCTGGGCCCGGAA
ATTTGATGTTGGGAAGGGGTCGAGCACCTTGATGGACACGTTGGACTTTC
AGAGAGAGTGTCGACACGCCTTTGACTACGAAGAGGAGGACATGGACTGG
GCGCCGGCTATTATTTTCGCCAAGGAGATGGAGGGCAAGATTGAAGTGAG
GGAGGGAGGGCGGGAGGCCGGAGAGGAAGGGGCGGAGGACAGGTGTGTTT
ATCGGGAGGTGAGGTCGGAGGGGCATTTGGTGACCGGAAAGGATATGCTG
GCTCATCTCGATAAGGCTAGAAGGAGTCATGATGCCGAGGCCATTATGCG
CTTTATCGTATCCGTAGAGAGAGAGATGAGCGCGCATACGGACCACTATG
CTCACCCGCAGTGGCAGGAGCAGAGGCGGAGGTTGCAGCAGCATCGGGAA
GAGGCGGAGAGGCAATTGTTGCCGGGCACTCGACTCTTGGGAGCAGCGGG
GAATGAAGGGAGTGAGTGGGTGAGGTGA back to top
|