NO02G00620.1, NO02G00620.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G00620.1
Unique NameNO02G00620.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1952
Alignment locationchr2:210306..212472 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:210306..212472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G00620.1 vs.
Match: EWM30554.1 (hypothetical protein Naga_100033g3 [Nannochloropsis gaditana])

HSP 1 Score: 114.8 bits (286), Expect = 5.200e-22
Identity = 147/351 (41.88%), Postives = 188/351 (53.56%), Query Frame = 0 
Query:    9 PPDNSSVEGEERQQEQQEVQRGKILSVGQEEEDMAEDADGREIDEDDENNDGDCDDEEEEEVLVLVDLPEYAGVALFEKAESIEIKNLAGPDAPEMIINGMRTFHGTYEDPLGATLIVDDSQIDHTCPRVNTGKRKRGRPRSESLEMAAAAVAAAAAAGGGKGGEGGRAGGAGGTSAKKEEVGKDGKAD-----------GDLEQEEPEGRQEGEGGREGG-------QPPRVLSITTKLLTFIEKNKGGFMRSVEEEVLADALAASRTRAEETRGGREGEQRRERGGEEEDEEEDEEEDEEEEEEE------EDEEEDEE--------EDEEEDEEEDEDGEGGEEDEEE 328
            P   S ++G+  +   +  +R K   +GQ   D A D +  E        +GD   EEEE +LV+VDLPEYAGVALFE+AESIEIKN+AGP APE+++NG+R F G YEDPLG++LIV+D +IDHTC  +  G RK+GRPRSESLE               +  +     G GG     EEVG DG+              D  +E  E   EG G R+ G         P  LSI +K+L F+E+      R      L D    SR R  +      GEQ  ER G EE+E   EEEDEE  EEE      EDEEED+E        ED E+D+++DEDGE  EE+E+E
Sbjct:   32 PRSTSGMDGKANKDSTELCRRRKEEQLGQ---DRARDKEAAE--------NGDALGEEEE-ILVMVDLPEYAGVALFEEAESIEIKNIAGPGAPELVVNGVRNFKGHYEDPLGSSLIVNDHRIDHTC--IRQGARKKGRPRSESLEEELR-----------EKEKNFTGEGLGGKEICGEEVGNDGRRSWKGARRELWNGRDRGKERVERNCEGTGERDDGGRKEQGEMEPAALSIASKVLVFLEE------RHSRGSALMDQDGMSRRRERKGAWDTRGEQGNERDGTEEEEVGREEEDEEGREEEEAGGEAEDEEEDDEDYDDEEDNEDNEDDDDDDEDGEVAEEEEDE 351
The following BLAST results are available for this feature:
BLAST of NO02G00620.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30554.15.200e-2241.88hypothetical protein Naga_100033g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G00620NO02G00620Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G00620.1NO02G00620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G00620.1.cds1NO02G00620.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00620.1.cds2NO02G00620.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G00620.1 ID=NO02G00620.1|Name=NO02G00620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1952bp
GGGGGGGGGTCCGCTACCGTATTTGTTTTTAACCTTTCTTCCTTCATCTC
AATTCTTCTCATTGGAAGGAATGCTATAGTTAAGAACATTGCTGGTATTG
CCCCGGGGCGACGCTTGGTGGAAAGCATAACATTTTTTCGTTATGATGAA
TGGTGATGAAAAATAAGCAATGAGAGAGGTATGTATGCCGCACTTTCTCC
CAGGGCTAAATGTCTTGTCTGCACATTCCAAAGAGCAGGGGCAAGGAAAT
GGTAAAATAGACAAGGAAGGGGAAAACAAAACAGGGAAAGATGGCCGTAA
GAGCAACAAGGGGGAGCACAAGAGGTGCCGATGTGGCCAAGCGACGGATC
AGCCACCATAGGCGGCGAGTTGTAAGGTGCGCTGGTTGCTATTGCTTCAT
CCGGGCCCTCGTTATACTCGAAGAAACGTATACCCTCGCATATGAACACA
TATCCTCTCTTTCTAAGAAGCGTTGAATCTCATCAATTGTGCTATTACCT
CTTCTCACTTGATTGCTGCTGCTGACTCTCCCTCACGACAGCTACGCTTT
GAGCTCTTCGTGTTCTGACTGGCTGGTTGAGCGGTTGGTCATACTGCAAT
TATTATTATTATTATATAAAACACACATCTCCTCCTACTCGCCGTATAAC
CGCCAAACGTCTACCTCCCCACCCTCACCTCAAATCCTCCCTTCTCTTTT
TCTTCCCTCTCCTACACATCTCATGGGGTAAAGCCACCACGGATAGGCAT
GGAGGCCATCATAGAGATGCAGCCTCCAGATAACTCGTCAGTTGAGGGGG
AAGAACGACAGCAAGAGCAGCAGGAGGTGCAAAGAGGGAAAATCTTGAGC
GTTGGACAAGAAGAGGAGGACATGGCCGAAGACGCAGACGGGCGAGAAAT
TGACGAGGATGACGAGAATAATGATGGTGATTGCGATGATGAGGAAGAGG
AGGAGGTCCTAGTGTTGGTGGACTTGCCCGAATATGCAGGCGTGGCCTTG
TTCGAAAAAGCGGAGAGCATCGAGATCAAGAATCTGGCCGGACCCGACGC
CCCCGAGATGATCATAAACGGTATGCGCACGTTTCATGGGACGTACGAAG
ACCCTTTGGGCGCGACTTTGATCGTGGACGACTCCCAGATTGACCATACC
TGTCCGAGGGTGAACACGGGGAAGAGGAAAAGGGGCCGCCCTCGGAGTGA
GAGTTTGGAAATGGCAGCAGCAGCTGTGGCAGCTGCAGCAGCAGCAGGAG
GAGGAAAAGGAGGAGAAGGAGGAAGAGCAGGAGGAGCAGGAGGGACATCG
GCGAAGAAGGAGGAGGTGGGGAAGGACGGGAAGGCGGACGGGGACCTCGA
GCAGGAGGAGCCGGAGGGTAGACAAGAAGGGGAGGGAGGGAGGGAGGGAG
GGCAACCACCGCGAGTGTTATCAATAACGACGAAGCTGTTGACGTTTATT
GAGAAGAATAAAGGGGGATTTATGCGGTCGGTGGAGGAGGAGGTGCTGGC
AGATGCTTTGGCAGCGTCACGTACACGGGCGGAAGAGACGAGGGGGGGGA
GGGAAGGGGAACAGCGAAGGGAGAGAGGAGGCGAAGAGGAGGATGAGGAG
GAGGATGAGGAGGAGGATGAGGAGGAAGAGGAAGAGGAAGAGGACGAAGA
GGAGGACGAAGAGGAGGACGAAGAGGAGGACGAAGAGGAGGACGAGGATG
GAGAGGGAGGGGAGGAGGACGAGGAAGAGCGTCAGGGAGTGTAGAGGACG
GGGTTTGAGGACCCTCGAAGTTCACGGGCTCTTTGAACGAAAACAATTGT
CGATATTGGAACAAGGCAAACGCCCGCAAATGCCCAGCGCCTCCATCATC
CAAGACCTGTGAAACGTGTGATGTATAGATGTGATAAATAAAACACCGAG
GAAAGAAGAGAAAGCAAAAGCGGTGCTTTCCCGTGTGAAGGGAGAGGTTG
AG
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protein sequence of NO02G00620.1

>NO02G00620.1-protein ID=NO02G00620.1-protein|Name=NO02G00620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=332bp
MEAIIEMQPPDNSSVEGEERQQEQQEVQRGKILSVGQEEEDMAEDADGRE
IDEDDENNDGDCDDEEEEEVLVLVDLPEYAGVALFEKAESIEIKNLAGPD
APEMIINGMRTFHGTYEDPLGATLIVDDSQIDHTCPRVNTGKRKRGRPRS
ESLEMAAAAVAAAAAAGGGKGGEGGRAGGAGGTSAKKEEVGKDGKADGDL
EQEEPEGRQEGEGGREGGQPPRVLSITTKLLTFIEKNKGGFMRSVEEEVL
ADALAASRTRAEETRGGREGEQRRERGGEEEDEEEDEEEDEEEEEEEEDE
EEDEEEDEEEDEEEDEDGEGGEEDEEERQGV*
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mRNA from alignment at chr2:210306..212472-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G00620.1 ID=NO02G00620.1|Name=NO02G00620.1|organism=Nannochloropsis oceanica|type=mRNA|length=2167bp|location=Sequence derived from alignment at chr2:210306..212472- (Nannochloropsis oceanica)
GGGGGGGGGTCCGCTACCGTATTTGTTTTTAACCTTTCTTCCTTCATCTC
AATTCTTCTCATTGGAAGGAATGCTATAGTTAAGAACATTGCTGGTATTG
CCCCGGGGCGACGCTTGGTGGAAAGCATAACATTTTTTCGTTATGATGAA
TGGTGATGAAAAATAAGCAATGAGAGAGGTATGTATGCCGCACTTTCTCC
CAGGGCTAAATGTCTTGTCTGCACATTCCAAAGAGCAGGGGCAAGGAAAT
GGTAAAATAGACAAGGAAGGGGAAAACAAAACAGGGAAAGATGGCCGTAA
GAGCAACAAGGGGGAGCACAAGAGGTGCCGATGTGGCCAAGCGACGGATC
AGCCACCATAGGCGGCGAGTTGTAAGGTGCGCTGGTTGCTATTGCTTCAT
CCGGGCCCTCGTTATACTCGAAGAAACGTATACCCTCGCATATGAACACA
TATCCTCTCTTTCTAAGAAGCGTTGAATCTCATCAATTGTGCTATTACCT
CTTCTCACTTGATTGCTGCTGCTGACTCTCCCTCACGACAGCTACGCTTT
GAGCTCTTCGTGTTCTGACTGGCTGGTTGAGCGGTTGGTCATACTGCAAT
TATTATTATTATTATATAAAACACACATCTCCTCCTACTCGCCGTATAAC
CGCCAAACGTCTACCTCCCCACCCTCACCTCAAATCCTCCCTTCTCTTTT
TCTTCCCTCTCCTACACATCTCATGGGGTAAAGCCACCACGGATAGGCAT
GGAGGCCATCATAGAGATGCAGCCTCCAGATAACTCGTCAGTTGAGGGGG
AAGAACGACAGCAAGAGCAGCAGGAGGTGCAAAGAGGGAAAATCTTGAGC
GTTGGACAAGAAGAGGAGGACATGGCCGAAGACGCAGACGGGCGAGAAAT
TGACGAGGATGACGAGAATAATGATGGTGATTGCGATGATGAGGAAGAGG
AGGAGGTCCTAGTGTTGGTGGACTTGCCCGAATATGCAGGCGTGGCCTTG
TTCGAAAAAGCGGAGAGCATCGAGATCAAGGTAAAGGGACGGAAGATAGA
AAGGGGAGGAGGAGGAAAACAGGAAAACGGGAAAGATCGTTTGTAGACTA
TGTCATTGGCAACTCCGTAACTGATCGTCTTTCTCGTTTACCTACATTTC
TCCACGCCGATGCCTTCATTTATACCTCCCATCCTCTTTCTTCTTCTCAC
GACTCCCTTTCCTTCCTCTCCCTCTCTCCCTCCCTCCCGCCCAAGAATCT
GGCCGGACCCGACGCCCCCGAGATGATCATAAACGGTATGCGCACGTTTC
ATGGGACGTACGAAGACCCTTTGGGCGCGACTTTGATCGTGGACGACTCC
CAGATTGACCATACCTGTCCGAGGGTGAACACGGGGAAGAGGAAAAGGGG
CCGCCCTCGGAGTGAGAGTTTGGAAATGGCAGCAGCAGCTGTGGCAGCTG
CAGCAGCAGCAGGAGGAGGAAAAGGAGGAGAAGGAGGAAGAGCAGGAGGA
GCAGGAGGGACATCGGCGAAGAAGGAGGAGGTGGGGAAGGACGGGAAGGC
GGACGGGGACCTCGAGCAGGAGGAGCCGGAGGGTAGACAAGAAGGGGAGG
GAGGGAGGGAGGGAGGGCAACCACCGCGAGTGTTATCAATAACGACGAAG
CTGTTGACGTTTATTGAGAAGAATAAAGGGGGATTTATGCGGTCGGTGGA
GGAGGAGGTGCTGGCAGATGCTTTGGCAGCGTCACGTACACGGGCGGAAG
AGACGAGGGGGGGGAGGGAAGGGGAACAGCGAAGGGAGAGAGGAGGCGAA
GAGGAGGATGAGGAGGAGGATGAGGAGGAGGATGAGGAGGAAGAGGAAGA
GGAAGAGGACGAAGAGGAGGACGAAGAGGAGGACGAAGAGGAGGACGAAG
AGGAGGACGAGGATGGAGAGGGAGGGGAGGAGGACGAGGAAGAGCGTCAG
GGAGTGTAGAGGACGGGGTTTGAGGACCCTCGAAGTTCACGGGCTCTTTG
AACGAAAACAATTGTCGATATTGGAACAAGGCAAACGCCCGCAAATGCCC
AGCGCCTCCATCATCCAAGACCTGTGAAACGTGTGATGTATAGATGTGAT
AAATAAAACACCGAGGAAAGAAGAGAAAGCAAAAGCGGTGCTTTCCCGTG
TGAAGGGAGAGGTTGAG
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Coding sequence (CDS) from alignment at chr2:210306..212472-

>NO02G00620.1 ID=NO02G00620.1|Name=NO02G00620.1|organism=Nannochloropsis oceanica|type=CDS|length=996bp|location=Sequence derived from alignment at chr2:210306..212472- (Nannochloropsis oceanica)
ATGGAGGCCATCATAGAGATGCAGCCTCCAGATAACTCGTCAGTTGAGGG
GGAAGAACGACAGCAAGAGCAGCAGGAGGTGCAAAGAGGGAAAATCTTGA
GCGTTGGACAAGAAGAGGAGGACATGGCCGAAGACGCAGACGGGCGAGAA
ATTGACGAGGATGACGAGAATAATGATGGTGATTGCGATGATGAGGAAGA
GGAGGAGGTCCTAGTGTTGGTGGACTTGCCCGAATATGCAGGCGTGGCCT
TGTTCGAAAAAGCGGAGAGCATCGAGATCAAGAATCTGGCCGGACCCGAC
GCCCCCGAGATGATCATAAACGGTATGCGCACGTTTCATGGGACGTACGA
AGACCCTTTGGGCGCGACTTTGATCGTGGACGACTCCCAGATTGACCATA
CCTGTCCGAGGGTGAACACGGGGAAGAGGAAAAGGGGCCGCCCTCGGAGT
GAGAGTTTGGAAATGGCAGCAGCAGCTGTGGCAGCTGCAGCAGCAGCAGG
AGGAGGAAAAGGAGGAGAAGGAGGAAGAGCAGGAGGAGCAGGAGGGACAT
CGGCGAAGAAGGAGGAGGTGGGGAAGGACGGGAAGGCGGACGGGGACCTC
GAGCAGGAGGAGCCGGAGGGTAGACAAGAAGGGGAGGGAGGGAGGGAGGG
AGGGCAACCACCGCGAGTGTTATCAATAACGACGAAGCTGTTGACGTTTA
TTGAGAAGAATAAAGGGGGATTTATGCGGTCGGTGGAGGAGGAGGTGCTG
GCAGATGCTTTGGCAGCGTCACGTACACGGGCGGAAGAGACGAGGGGGGG
GAGGGAAGGGGAACAGCGAAGGGAGAGAGGAGGCGAAGAGGAGGATGAGG
AGGAGGATGAGGAGGAGGATGAGGAGGAAGAGGAAGAGGAAGAGGACGAA
GAGGAGGACGAAGAGGAGGACGAAGAGGAGGACGAAGAGGAGGACGAGGA
TGGAGAGGGAGGGGAGGAGGACGAGGAAGAGCGTCAGGGAGTGTAG
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Synonyms
Publications