NO02G00550.1, NO02G00550.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G00550.1
Unique NameNO02G00550.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2852
Alignment locationchr2:190814..193665 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:190814..193665 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G00550.1 vs.
Match: EWM30605.1 (SANT/Myb domain protein [Nannochloropsis gaditana])

HSP 1 Score: 270.8 bits (691), Expect = 1.200e-68
Identity = 199/361 (55.12%), Postives = 225/361 (62.33%), Query Frame = 0
Query:   10 EDAVETVALSPMPVIEQEQEHQQLKHEAPDQEGLQQQEDHQHQ-----VHQQEQEQHQPKIDVHEPPQSAPFVAPGEVDVVPAPLILSQLPCMPSK--GPTSTIATRKSSILSGGTGNQGRWTEAEHELFLEGIDTYGKGAWKVISEKVVKSRSAEQVRIHAQKYFLRQTKQQSKKKNDDVAGSCTFRGGGGAAGGAGGGGEGGVADGEGKTKAGGKSSKEGHWTDEEHELFLKCWEKYGKSWKKLSEIITTRTNEQIRTHAQKYFAKLRELRERGYSGAYYMDGTRHLTKTFLGVAGGGGGGRGGAAHGPVAGGGRGGGRGGRRGGRGGGGGKPRVRVWGGRGGGRKGRESESDEEEGMM 364
            ++ V TV   PM +I   Q   + +H  P   G +++E    Q      H   Q+QH    +    PQSAPFVAPGE  + PAPLIL   P  PS    P      RKSSILSGG GNQGRWTEAEH+LFLEG+  +GKGAWK+ISEKVV++RSAEQVRIHAQKYFLRQ+KQ+ KKKN    G+     GGG     GGG +G            G  SKEGHWTDEEHELFL+CWE+YGKSWKKLSEII TRTNEQIRTHAQKYFAKLRELRERGY GAYYMDGTRHLTKTFL    GG    G AA                   RGGGGG+       GRG G    E E +EEEG +
Sbjct:    3 DNGVVTVHGEPMNMIALPQLPLRAEHPVPALPGPKEEEKRLQQPLLQPTHPSLQQQHPAVPEEEHAPQSAPFVAPGE--LAPAPLILPLPPLPPSTNISPDPIPPARKSSILSGGMGNQGRWTEAEHDLFLEGLREHGKGAWKLISEKVVRTRSAEQVRIHAQKYFLRQSKQE-KKKNAANKGAMAEIEGGGKESNGGGGPDG-----------PGAGSKEGHWTDEEHELFLRCWEQYGKSWKKLSEIIGTRTNEQIRTHAQKYFAKLRELRERGYEGAYYMDGTRHLTKTFL----GGTQPPGLAA-----------------SSRGGGGGEE------GRGEG----EKEGEEEEGQL 318          
The following BLAST results are available for this feature:
BLAST of NO02G00550.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30605.11.200e-6855.12SANT/Myb domain protein [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G00550NO02G00550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G00550.1NO02G00550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G00550.1.cds1NO02G00550.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G00550.1 ID=NO02G00550.1|Name=NO02G00550.1|organism=Nannochloropsis oceanica|type=mRNA|length=2852bp
AAATTGACATGCACCAAGCACGCACATTCCTTTTCCTTCTCGTCTACGAC
AGTTCCAAAAAAGGGATAACGATGAGTGCACACTCGCACTCGCAGCCACA
GCTTGGAAACACCATTGCACAGCCACTCGACCCAGCCTGCTTTTGTTTTA
AGACGAGAACATCTTGTGCACAAGGAAACAAAGATGCCCAGTCAGGGGCT
TTCTTAAATTGCTTAGAAAGGCGTCGAAACTAGAAGATCGAAAGGCGTGC
GTGCGGACGAGACAACAATGAAGTAAAAAGAGGGCGAGCCGGCACGGTCC
GTGCTTCTAATTTGCCAGATCATTCCCTCCTGCGCCCTACCAAGCGTCCC
CGACACGCCCTCCCTTCCCATTCAAACAGTGCCGTATTGTGGCAGACGGA
CGTAGGAGTGGGAAGACTCCTGTAGTCCACTGACAAACCTGGGCAACATC
GTCTGTGCGGCAAGGACGAAGACGAAGAAATCTTGGGCAGCTCGGACCTG
ACGATGTACTTGGCTTACAATACACCACCAACCATACGCCACACTACACA
CAGGTCATACCACTGTGTATCCTAGTCACTCTCGCATAAGCTTGTCAAGT
CGCCGCCGCTTCTCAACGAGTATTTTTTTACCAAGCCGACCCACGAGAGG
AAAAAAGAGAAGGCTCGTTTTCTTCGGAGCACCTCCTGCTCCACCACCGC
CACTGCGACAAAGCAAGCACCACCACCACGCGAACAATACAACATACGGA
GCATGGCTGATATTTCTGTTACCCCTATAGAAGACGCCGTCGAAACTGTG
GCCCTTTCCCCCATGCCTGTGATCGAGCAGGAACAAGAACACCAGCAGCT
GAAGCACGAGGCTCCCGATCAAGAAGGACTGCAGCAGCAGGAAGACCATC
AGCACCAAGTGCACCAGCAAGAACAAGAGCAACATCAGCCGAAGATAGAT
GTGCACGAACCCCCACAATCCGCGCCGTTCGTGGCTCCCGGTGAGGTGGA
CGTGGTGCCTGCGCCTCTGATCCTCTCGCAGCTCCCATGCATGCCTTCCA
AAGGCCCCACCTCGACTATTGCCACCAGGAAAAGCAGCATTTTAAGTGGC
GGCACAGGAAACCAAGGCCGATGGACAGAAGCAGAACATGAGTTGTTCTT
GGAGGGCATTGATACGTATGGGAAGGGGGCGTGGAAGGTGATTAGTGAGA
AGGTTGTCAAGTCCCGGAGTGCGGAGCAGGTGAGGATACACGCGCAGAAG
TATTTCCTACGGCAGACAAAGCAGCAGAGCAAGAAGAAAAATGACGATGT
CGCTGGTAGTTGTACTTTCAGGGGGGGAGGAGGGGCAGCGGGTGGGGCAG
GAGGAGGAGGGGAGGGTGGAGTCGCGGATGGAGAGGGGAAGACCAAGGCG
GGAGGGAAGAGCAGCAAGGAAGGGCATTGGACAGACGAGGAGCACGAACT
ATTCTTGAAGTGCTGGGAAAAGTACGGCAAAAGCTGGAAGAAATTAAGTG
AGATCATAACGACGCGGACGAACGAACAAATCCGGACCCATGCCCAGAAA
TATTTTGCGAAATTGCGCGAACTGAGAGAGAGGGGGTACTCTGGTGCCTA
TTACATGGACGGCACGAGGCATTTGACAAAGACCTTTTTGGGTGTTGCCG
GTGGTGGTGGTGGGGGTCGGGGCGGGGCTGCACATGGGCCGGTGGCGGGC
GGGGGGCGGGGGGGAGGGAGGGGAGGGAGAAGAGGGGGCAGAGGGGGAGG
AGGGGGTAAGCCGAGAGTGAGGGTGTGGGGAGGAAGAGGGGGTGGGAGGA
AAGGGAGAGAAAGCGAGAGTGATGAGGAGGAAGGCATGATGGAGGGAGGT
GCAGAGGAGGAGGAAGAAGATGAGGAGGAGGACTTCGGGGCGGTGTATAT
GGAGGGGGAGGGCGAGGACGAGGACGAGGACGAGGACGAGGACGTGATGG
ACGAAAGCGAGGATGAGGAACACGACTATGATGACCAAGGTAGAGGGTGT
TTGAGAGGGAGTGATCGGAGTGTGCGGAACACGAGCACTAGGAAACGGGG
GACGAAGCGTCGCCGAGTGGCCGGGGGAGGGGAGGAAGAAGGCAGCATCC
CGGCCGTTTCGGGTAACGGTCGGCGACGAGGTGGAAGGCGGGCAGACTCT
CCTACCTCTCCCTCCGCATCTTCCTCTATCTCCTTGCCACGCGGAACGGC
AGCAACGACAGCAGCAGCGTCGGCAGCGGCAGCAGCAGCAGCAGCAGCAG
CAGCGGCCGCAGTAGGGGGAGCAGGTCCCGCGGACAAAGGGAGAAATGGT
GGGAAAAAGGGAAGGCGGAAGGGGGCCTTGCTGTCACAGAATACAGAGAT
GGAGGCCGCCAAGTCTCTGATGAGCATCATTGCCGCGGCGGAAGAGGACG
AGGATGATGAAGGGGGGGAGGGGGGGAAGGAGGGAGGGGCGGACAGGAAA
GACTGTGGGCCGACCCGACGAGAGGAGGGAGAGAAGGAGGGAGAGGTGGC
ATCGGTAGTTTCTGAGGCTGAGGGAGACGGGGGAATGGTGTCGTCCCCGA
TGGGGGAGGACATGTTCGTTCCTCCTCCTTTGTTGAATGGAGAGGAGGTT
GAGATTGCTGTGTGTGCCATATCTCAGGTTTCGCCTCCCTTGGTCCAGCA
GCAGCAGCAGCAGCAGCAGCAGCTGCAGTCTTCATTGGATTCGCCTCCTG
CGGTGCAACAGCAGCAACCGCAACAGCAACAGCATGAGAAGGAAGAAAAG
GGAGGGGTAGAGGTAGAGGTGGAGGAAGGGGGGGGAGGGGTAACGGCAGA
AGCGGCGGGGCTGGCGGGGATGGCCTCGCCCGGGGATATGATAGAGGTGT
AA
back to top

protein sequence of NO02G00550.1

>NO02G00550.1-protein ID=NO02G00550.1-protein|Name=NO02G00550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=700bp
MADISVTPIEDAVETVALSPMPVIEQEQEHQQLKHEAPDQEGLQQQEDHQ
HQVHQQEQEQHQPKIDVHEPPQSAPFVAPGEVDVVPAPLILSQLPCMPSK
GPTSTIATRKSSILSGGTGNQGRWTEAEHELFLEGIDTYGKGAWKVISEK
VVKSRSAEQVRIHAQKYFLRQTKQQSKKKNDDVAGSCTFRGGGGAAGGAG
GGGEGGVADGEGKTKAGGKSSKEGHWTDEEHELFLKCWEKYGKSWKKLSE
IITTRTNEQIRTHAQKYFAKLRELRERGYSGAYYMDGTRHLTKTFLGVAG
GGGGGRGGAAHGPVAGGGRGGGRGGRRGGRGGGGGKPRVRVWGGRGGGRK
GRESESDEEEGMMEGGAEEEEEDEEEDFGAVYMEGEGEDEDEDEDEDVMD
ESEDEEHDYDDQGRGCLRGSDRSVRNTSTRKRGTKRRRVAGGGEEEGSIP
AVSGNGRRRGGRRADSPTSPSASSSISLPRGTAATTAAASAAAAAAAAAA
AAAVGGAGPADKGRNGGKKGRRKGALLSQNTEMEAAKSLMSIIAAAEEDE
DDEGGEGGKEGGADRKDCGPTRREEGEKEGEVASVVSEAEGDGGMVSSPM
GEDMFVPPPLLNGEEVEIAVCAISQVSPPLVQQQQQQQQQLQSSLDSPPA
VQQQQPQQQQHEKEEKGGVEVEVEEGGGGVTAEAAGLAGMASPGDMIEV*
back to top

mRNA from alignment at chr2:190814..193665-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G00550.1 ID=NO02G00550.1|Name=NO02G00550.1|organism=Nannochloropsis oceanica|type=mRNA|length=2852bp|location=Sequence derived from alignment at chr2:190814..193665- (Nannochloropsis oceanica)
AAATTGACATGCACCAAGCACGCACATTCCTTTTCCTTCTCGTCTACGAC AGTTCCAAAAAAGGGATAACGATGAGTGCACACTCGCACTCGCAGCCACA GCTTGGAAACACCATTGCACAGCCACTCGACCCAGCCTGCTTTTGTTTTA AGACGAGAACATCTTGTGCACAAGGAAACAAAGATGCCCAGTCAGGGGCT TTCTTAAATTGCTTAGAAAGGCGTCGAAACTAGAAGATCGAAAGGCGTGC GTGCGGACGAGACAACAATGAAGTAAAAAGAGGGCGAGCCGGCACGGTCC GTGCTTCTAATTTGCCAGATCATTCCCTCCTGCGCCCTACCAAGCGTCCC CGACACGCCCTCCCTTCCCATTCAAACAGTGCCGTATTGTGGCAGACGGA CGTAGGAGTGGGAAGACTCCTGTAGTCCACTGACAAACCTGGGCAACATC GTCTGTGCGGCAAGGACGAAGACGAAGAAATCTTGGGCAGCTCGGACCTG ACGATGTACTTGGCTTACAATACACCACCAACCATACGCCACACTACACA CAGGTCATACCACTGTGTATCCTAGTCACTCTCGCATAAGCTTGTCAAGT CGCCGCCGCTTCTCAACGAGTATTTTTTTACCAAGCCGACCCACGAGAGG AAAAAAGAGAAGGCTCGTTTTCTTCGGAGCACCTCCTGCTCCACCACCGC CACTGCGACAAAGCAAGCACCACCACCACGCGAACAATACAACATACGGA GCATGGCTGATATTTCTGTTACCCCTATAGAAGACGCCGTCGAAACTGTG GCCCTTTCCCCCATGCCTGTGATCGAGCAGGAACAAGAACACCAGCAGCT GAAGCACGAGGCTCCCGATCAAGAAGGACTGCAGCAGCAGGAAGACCATC AGCACCAAGTGCACCAGCAAGAACAAGAGCAACATCAGCCGAAGATAGAT GTGCACGAACCCCCACAATCCGCGCCGTTCGTGGCTCCCGGTGAGGTGGA CGTGGTGCCTGCGCCTCTGATCCTCTCGCAGCTCCCATGCATGCCTTCCA AAGGCCCCACCTCGACTATTGCCACCAGGAAAAGCAGCATTTTAAGTGGC GGCACAGGAAACCAAGGCCGATGGACAGAAGCAGAACATGAGTTGTTCTT GGAGGGCATTGATACGTATGGGAAGGGGGCGTGGAAGGTGATTAGTGAGA AGGTTGTCAAGTCCCGGAGTGCGGAGCAGGTGAGGATACACGCGCAGAAG TATTTCCTACGGCAGACAAAGCAGCAGAGCAAGAAGAAAAATGACGATGT CGCTGGTAGTTGTACTTTCAGGGGGGGAGGAGGGGCAGCGGGTGGGGCAG GAGGAGGAGGGGAGGGTGGAGTCGCGGATGGAGAGGGGAAGACCAAGGCG GGAGGGAAGAGCAGCAAGGAAGGGCATTGGACAGACGAGGAGCACGAACT ATTCTTGAAGTGCTGGGAAAAGTACGGCAAAAGCTGGAAGAAATTAAGTG AGATCATAACGACGCGGACGAACGAACAAATCCGGACCCATGCCCAGAAA TATTTTGCGAAATTGCGCGAACTGAGAGAGAGGGGGTACTCTGGTGCCTA TTACATGGACGGCACGAGGCATTTGACAAAGACCTTTTTGGGTGTTGCCG GTGGTGGTGGTGGGGGTCGGGGCGGGGCTGCACATGGGCCGGTGGCGGGC GGGGGGCGGGGGGGAGGGAGGGGAGGGAGAAGAGGGGGCAGAGGGGGAGG AGGGGGTAAGCCGAGAGTGAGGGTGTGGGGAGGAAGAGGGGGTGGGAGGA AAGGGAGAGAAAGCGAGAGTGATGAGGAGGAAGGCATGATGGAGGGAGGT GCAGAGGAGGAGGAAGAAGATGAGGAGGAGGACTTCGGGGCGGTGTATAT GGAGGGGGAGGGCGAGGACGAGGACGAGGACGAGGACGAGGACGTGATGG ACGAAAGCGAGGATGAGGAACACGACTATGATGACCAAGGTAGAGGGTGT TTGAGAGGGAGTGATCGGAGTGTGCGGAACACGAGCACTAGGAAACGGGG GACGAAGCGTCGCCGAGTGGCCGGGGGAGGGGAGGAAGAAGGCAGCATCC CGGCCGTTTCGGGTAACGGTCGGCGACGAGGTGGAAGGCGGGCAGACTCT CCTACCTCTCCCTCCGCATCTTCCTCTATCTCCTTGCCACGCGGAACGGC AGCAACGACAGCAGCAGCGTCGGCAGCGGCAGCAGCAGCAGCAGCAGCAG CAGCGGCCGCAGTAGGGGGAGCAGGTCCCGCGGACAAAGGGAGAAATGGT GGGAAAAAGGGAAGGCGGAAGGGGGCCTTGCTGTCACAGAATACAGAGAT GGAGGCCGCCAAGTCTCTGATGAGCATCATTGCCGCGGCGGAAGAGGACG AGGATGATGAAGGGGGGGAGGGGGGGAAGGAGGGAGGGGCGGACAGGAAA GACTGTGGGCCGACCCGACGAGAGGAGGGAGAGAAGGAGGGAGAGGTGGC ATCGGTAGTTTCTGAGGCTGAGGGAGACGGGGGAATGGTGTCGTCCCCGA TGGGGGAGGACATGTTCGTTCCTCCTCCTTTGTTGAATGGAGAGGAGGTT GAGATTGCTGTGTGTGCCATATCTCAGGTTTCGCCTCCCTTGGTCCAGCA GCAGCAGCAGCAGCAGCAGCAGCTGCAGTCTTCATTGGATTCGCCTCCTG CGGTGCAACAGCAGCAACCGCAACAGCAACAGCATGAGAAGGAAGAAAAG GGAGGGGTAGAGGTAGAGGTGGAGGAAGGGGGGGGAGGGGTAACGGCAGA AGCGGCGGGGCTGGCGGGGATGGCCTCGCCCGGGGATATGATAGAGGTGT AA
back to top

Coding sequence (CDS) from alignment at chr2:190814..193665-

>NO02G00550.1 ID=NO02G00550.1|Name=NO02G00550.1|organism=Nannochloropsis oceanica|type=CDS|length=2100bp|location=Sequence derived from alignment at chr2:190814..193665- (Nannochloropsis oceanica)
ATGGCTGATATTTCTGTTACCCCTATAGAAGACGCCGTCGAAACTGTGGC
CCTTTCCCCCATGCCTGTGATCGAGCAGGAACAAGAACACCAGCAGCTGA
AGCACGAGGCTCCCGATCAAGAAGGACTGCAGCAGCAGGAAGACCATCAG
CACCAAGTGCACCAGCAAGAACAAGAGCAACATCAGCCGAAGATAGATGT
GCACGAACCCCCACAATCCGCGCCGTTCGTGGCTCCCGGTGAGGTGGACG
TGGTGCCTGCGCCTCTGATCCTCTCGCAGCTCCCATGCATGCCTTCCAAA
GGCCCCACCTCGACTATTGCCACCAGGAAAAGCAGCATTTTAAGTGGCGG
CACAGGAAACCAAGGCCGATGGACAGAAGCAGAACATGAGTTGTTCTTGG
AGGGCATTGATACGTATGGGAAGGGGGCGTGGAAGGTGATTAGTGAGAAG
GTTGTCAAGTCCCGGAGTGCGGAGCAGGTGAGGATACACGCGCAGAAGTA
TTTCCTACGGCAGACAAAGCAGCAGAGCAAGAAGAAAAATGACGATGTCG
CTGGTAGTTGTACTTTCAGGGGGGGAGGAGGGGCAGCGGGTGGGGCAGGA
GGAGGAGGGGAGGGTGGAGTCGCGGATGGAGAGGGGAAGACCAAGGCGGG
AGGGAAGAGCAGCAAGGAAGGGCATTGGACAGACGAGGAGCACGAACTAT
TCTTGAAGTGCTGGGAAAAGTACGGCAAAAGCTGGAAGAAATTAAGTGAG
ATCATAACGACGCGGACGAACGAACAAATCCGGACCCATGCCCAGAAATA
TTTTGCGAAATTGCGCGAACTGAGAGAGAGGGGGTACTCTGGTGCCTATT
ACATGGACGGCACGAGGCATTTGACAAAGACCTTTTTGGGTGTTGCCGGT
GGTGGTGGTGGGGGTCGGGGCGGGGCTGCACATGGGCCGGTGGCGGGCGG
GGGGCGGGGGGGAGGGAGGGGAGGGAGAAGAGGGGGCAGAGGGGGAGGAG
GGGGTAAGCCGAGAGTGAGGGTGTGGGGAGGAAGAGGGGGTGGGAGGAAA
GGGAGAGAAAGCGAGAGTGATGAGGAGGAAGGCATGATGGAGGGAGGTGC
AGAGGAGGAGGAAGAAGATGAGGAGGAGGACTTCGGGGCGGTGTATATGG
AGGGGGAGGGCGAGGACGAGGACGAGGACGAGGACGAGGACGTGATGGAC
GAAAGCGAGGATGAGGAACACGACTATGATGACCAAGGTAGAGGGTGTTT
GAGAGGGAGTGATCGGAGTGTGCGGAACACGAGCACTAGGAAACGGGGGA
CGAAGCGTCGCCGAGTGGCCGGGGGAGGGGAGGAAGAAGGCAGCATCCCG
GCCGTTTCGGGTAACGGTCGGCGACGAGGTGGAAGGCGGGCAGACTCTCC
TACCTCTCCCTCCGCATCTTCCTCTATCTCCTTGCCACGCGGAACGGCAG
CAACGACAGCAGCAGCGTCGGCAGCGGCAGCAGCAGCAGCAGCAGCAGCA
GCGGCCGCAGTAGGGGGAGCAGGTCCCGCGGACAAAGGGAGAAATGGTGG
GAAAAAGGGAAGGCGGAAGGGGGCCTTGCTGTCACAGAATACAGAGATGG
AGGCCGCCAAGTCTCTGATGAGCATCATTGCCGCGGCGGAAGAGGACGAG
GATGATGAAGGGGGGGAGGGGGGGAAGGAGGGAGGGGCGGACAGGAAAGA
CTGTGGGCCGACCCGACGAGAGGAGGGAGAGAAGGAGGGAGAGGTGGCAT
CGGTAGTTTCTGAGGCTGAGGGAGACGGGGGAATGGTGTCGTCCCCGATG
GGGGAGGACATGTTCGTTCCTCCTCCTTTGTTGAATGGAGAGGAGGTTGA
GATTGCTGTGTGTGCCATATCTCAGGTTTCGCCTCCCTTGGTCCAGCAGC
AGCAGCAGCAGCAGCAGCAGCTGCAGTCTTCATTGGATTCGCCTCCTGCG
GTGCAACAGCAGCAACCGCAACAGCAACAGCATGAGAAGGAAGAAAAGGG
AGGGGTAGAGGTAGAGGTGGAGGAAGGGGGGGGAGGGGTAACGGCAGAAG
CGGCGGGGCTGGCGGGGATGGCCTCGCCCGGGGATATGATAGAGGTGTAA
back to top
Synonyms
Publications