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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:190814..193665 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G00550.1 vs.
Match: EWM30605.1 (SANT/Myb domain protein [Nannochloropsis gaditana]) HSP 1 Score: 270.8 bits (691), Expect = 1.200e-68 Identity = 199/361 (55.12%), Postives = 225/361 (62.33%), Query Frame = 0
Query: 10 EDAVETVALSPMPVIEQEQEHQQLKHEAPDQEGLQQQEDHQHQ-----VHQQEQEQHQPKIDVHEPPQSAPFVAPGEVDVVPAPLILSQLPCMPSK--GPTSTIATRKSSILSGGTGNQGRWTEAEHELFLEGIDTYGKGAWKVISEKVVKSRSAEQVRIHAQKYFLRQTKQQSKKKNDDVAGSCTFRGGGGAAGGAGGGGEGGVADGEGKTKAGGKSSKEGHWTDEEHELFLKCWEKYGKSWKKLSEIITTRTNEQIRTHAQKYFAKLRELRERGYSGAYYMDGTRHLTKTFLGVAGGGGGGRGGAAHGPVAGGGRGGGRGGRRGGRGGGGGKPRVRVWGGRGGGRKGRESESDEEEGMM 364
++ V TV PM +I Q + +H P G +++E Q H Q+QH + PQSAPFVAPGE + PAPLIL P PS P RKSSILSGG GNQGRWTEAEH+LFLEG+ +GKGAWK+ISEKVV++RSAEQVRIHAQKYFLRQ+KQ+ KKKN G+ GGG GGG +G G SKEGHWTDEEHELFL+CWE+YGKSWKKLSEII TRTNEQIRTHAQKYFAKLRELRERGY GAYYMDGTRHLTKTFL GG G AA RGGGGG+ GRG G E E +EEEG +
Sbjct: 3 DNGVVTVHGEPMNMIALPQLPLRAEHPVPALPGPKEEEKRLQQPLLQPTHPSLQQQHPAVPEEEHAPQSAPFVAPGE--LAPAPLILPLPPLPPSTNISPDPIPPARKSSILSGGMGNQGRWTEAEHDLFLEGLREHGKGAWKLISEKVVRTRSAEQVRIHAQKYFLRQSKQE-KKKNAANKGAMAEIEGGGKESNGGGGPDG-----------PGAGSKEGHWTDEEHELFLRCWEQYGKSWKKLSEIIGTRTNEQIRTHAQKYFAKLRELRERGYEGAYYMDGTRHLTKTFL----GGTQPPGLAA-----------------SSRGGGGGEE------GRGEG----EKEGEEEEGQL 318
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G00550.1 ID=NO02G00550.1|Name=NO02G00550.1|organism=Nannochloropsis oceanica|type=mRNA|length=2852bp AAATTGACATGCACCAAGCACGCACATTCCTTTTCCTTCTCGTCTACGAC AGTTCCAAAAAAGGGATAACGATGAGTGCACACTCGCACTCGCAGCCACA GCTTGGAAACACCATTGCACAGCCACTCGACCCAGCCTGCTTTTGTTTTA AGACGAGAACATCTTGTGCACAAGGAAACAAAGATGCCCAGTCAGGGGCT TTCTTAAATTGCTTAGAAAGGCGTCGAAACTAGAAGATCGAAAGGCGTGC GTGCGGACGAGACAACAATGAAGTAAAAAGAGGGCGAGCCGGCACGGTCC GTGCTTCTAATTTGCCAGATCATTCCCTCCTGCGCCCTACCAAGCGTCCC CGACACGCCCTCCCTTCCCATTCAAACAGTGCCGTATTGTGGCAGACGGA CGTAGGAGTGGGAAGACTCCTGTAGTCCACTGACAAACCTGGGCAACATC GTCTGTGCGGCAAGGACGAAGACGAAGAAATCTTGGGCAGCTCGGACCTG ACGATGTACTTGGCTTACAATACACCACCAACCATACGCCACACTACACA CAGGTCATACCACTGTGTATCCTAGTCACTCTCGCATAAGCTTGTCAAGT CGCCGCCGCTTCTCAACGAGTATTTTTTTACCAAGCCGACCCACGAGAGG AAAAAAGAGAAGGCTCGTTTTCTTCGGAGCACCTCCTGCTCCACCACCGC CACTGCGACAAAGCAAGCACCACCACCACGCGAACAATACAACATACGGA GCATGGCTGATATTTCTGTTACCCCTATAGAAGACGCCGTCGAAACTGTG GCCCTTTCCCCCATGCCTGTGATCGAGCAGGAACAAGAACACCAGCAGCT GAAGCACGAGGCTCCCGATCAAGAAGGACTGCAGCAGCAGGAAGACCATC AGCACCAAGTGCACCAGCAAGAACAAGAGCAACATCAGCCGAAGATAGAT GTGCACGAACCCCCACAATCCGCGCCGTTCGTGGCTCCCGGTGAGGTGGA CGTGGTGCCTGCGCCTCTGATCCTCTCGCAGCTCCCATGCATGCCTTCCA AAGGCCCCACCTCGACTATTGCCACCAGGAAAAGCAGCATTTTAAGTGGC GGCACAGGAAACCAAGGCCGATGGACAGAAGCAGAACATGAGTTGTTCTT GGAGGGCATTGATACGTATGGGAAGGGGGCGTGGAAGGTGATTAGTGAGA AGGTTGTCAAGTCCCGGAGTGCGGAGCAGGTGAGGATACACGCGCAGAAG TATTTCCTACGGCAGACAAAGCAGCAGAGCAAGAAGAAAAATGACGATGT CGCTGGTAGTTGTACTTTCAGGGGGGGAGGAGGGGCAGCGGGTGGGGCAG GAGGAGGAGGGGAGGGTGGAGTCGCGGATGGAGAGGGGAAGACCAAGGCG GGAGGGAAGAGCAGCAAGGAAGGGCATTGGACAGACGAGGAGCACGAACT ATTCTTGAAGTGCTGGGAAAAGTACGGCAAAAGCTGGAAGAAATTAAGTG AGATCATAACGACGCGGACGAACGAACAAATCCGGACCCATGCCCAGAAA TATTTTGCGAAATTGCGCGAACTGAGAGAGAGGGGGTACTCTGGTGCCTA TTACATGGACGGCACGAGGCATTTGACAAAGACCTTTTTGGGTGTTGCCG GTGGTGGTGGTGGGGGTCGGGGCGGGGCTGCACATGGGCCGGTGGCGGGC GGGGGGCGGGGGGGAGGGAGGGGAGGGAGAAGAGGGGGCAGAGGGGGAGG AGGGGGTAAGCCGAGAGTGAGGGTGTGGGGAGGAAGAGGGGGTGGGAGGA AAGGGAGAGAAAGCGAGAGTGATGAGGAGGAAGGCATGATGGAGGGAGGT GCAGAGGAGGAGGAAGAAGATGAGGAGGAGGACTTCGGGGCGGTGTATAT GGAGGGGGAGGGCGAGGACGAGGACGAGGACGAGGACGAGGACGTGATGG ACGAAAGCGAGGATGAGGAACACGACTATGATGACCAAGGTAGAGGGTGT TTGAGAGGGAGTGATCGGAGTGTGCGGAACACGAGCACTAGGAAACGGGG GACGAAGCGTCGCCGAGTGGCCGGGGGAGGGGAGGAAGAAGGCAGCATCC CGGCCGTTTCGGGTAACGGTCGGCGACGAGGTGGAAGGCGGGCAGACTCT CCTACCTCTCCCTCCGCATCTTCCTCTATCTCCTTGCCACGCGGAACGGC AGCAACGACAGCAGCAGCGTCGGCAGCGGCAGCAGCAGCAGCAGCAGCAG CAGCGGCCGCAGTAGGGGGAGCAGGTCCCGCGGACAAAGGGAGAAATGGT GGGAAAAAGGGAAGGCGGAAGGGGGCCTTGCTGTCACAGAATACAGAGAT GGAGGCCGCCAAGTCTCTGATGAGCATCATTGCCGCGGCGGAAGAGGACG AGGATGATGAAGGGGGGGAGGGGGGGAAGGAGGGAGGGGCGGACAGGAAA GACTGTGGGCCGACCCGACGAGAGGAGGGAGAGAAGGAGGGAGAGGTGGC ATCGGTAGTTTCTGAGGCTGAGGGAGACGGGGGAATGGTGTCGTCCCCGA TGGGGGAGGACATGTTCGTTCCTCCTCCTTTGTTGAATGGAGAGGAGGTT GAGATTGCTGTGTGTGCCATATCTCAGGTTTCGCCTCCCTTGGTCCAGCA GCAGCAGCAGCAGCAGCAGCAGCTGCAGTCTTCATTGGATTCGCCTCCTG CGGTGCAACAGCAGCAACCGCAACAGCAACAGCATGAGAAGGAAGAAAAG GGAGGGGTAGAGGTAGAGGTGGAGGAAGGGGGGGGAGGGGTAACGGCAGA AGCGGCGGGGCTGGCGGGGATGGCCTCGCCCGGGGATATGATAGAGGTGT AA back to topprotein sequence of NO02G00550.1 >NO02G00550.1-protein ID=NO02G00550.1-protein|Name=NO02G00550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=700bp MADISVTPIEDAVETVALSPMPVIEQEQEHQQLKHEAPDQEGLQQQEDHQ HQVHQQEQEQHQPKIDVHEPPQSAPFVAPGEVDVVPAPLILSQLPCMPSK GPTSTIATRKSSILSGGTGNQGRWTEAEHELFLEGIDTYGKGAWKVISEK VVKSRSAEQVRIHAQKYFLRQTKQQSKKKNDDVAGSCTFRGGGGAAGGAG GGGEGGVADGEGKTKAGGKSSKEGHWTDEEHELFLKCWEKYGKSWKKLSE IITTRTNEQIRTHAQKYFAKLRELRERGYSGAYYMDGTRHLTKTFLGVAG GGGGGRGGAAHGPVAGGGRGGGRGGRRGGRGGGGGKPRVRVWGGRGGGRK GRESESDEEEGMMEGGAEEEEEDEEEDFGAVYMEGEGEDEDEDEDEDVMD ESEDEEHDYDDQGRGCLRGSDRSVRNTSTRKRGTKRRRVAGGGEEEGSIP AVSGNGRRRGGRRADSPTSPSASSSISLPRGTAATTAAASAAAAAAAAAA AAAVGGAGPADKGRNGGKKGRRKGALLSQNTEMEAAKSLMSIIAAAEEDE DDEGGEGGKEGGADRKDCGPTRREEGEKEGEVASVVSEAEGDGGMVSSPM GEDMFVPPPLLNGEEVEIAVCAISQVSPPLVQQQQQQQQQLQSSLDSPPA VQQQQPQQQQHEKEEKGGVEVEVEEGGGGVTAEAAGLAGMASPGDMIEV* back to topmRNA from alignment at chr2:190814..193665- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G00550.1 ID=NO02G00550.1|Name=NO02G00550.1|organism=Nannochloropsis oceanica|type=mRNA|length=2852bp|location=Sequence derived from alignment at chr2:190814..193665- (Nannochloropsis oceanica) AAATTGACATGCACCAAGCACGCACATTCCTTTTCCTTCTCGTCTACGAC
AGTTCCAAAAAAGGGATAACGATGAGTGCACACTCGCACTCGCAGCCACA
GCTTGGAAACACCATTGCACAGCCACTCGACCCAGCCTGCTTTTGTTTTA
AGACGAGAACATCTTGTGCACAAGGAAACAAAGATGCCCAGTCAGGGGCT
TTCTTAAATTGCTTAGAAAGGCGTCGAAACTAGAAGATCGAAAGGCGTGC
GTGCGGACGAGACAACAATGAAGTAAAAAGAGGGCGAGCCGGCACGGTCC
GTGCTTCTAATTTGCCAGATCATTCCCTCCTGCGCCCTACCAAGCGTCCC
CGACACGCCCTCCCTTCCCATTCAAACAGTGCCGTATTGTGGCAGACGGA
CGTAGGAGTGGGAAGACTCCTGTAGTCCACTGACAAACCTGGGCAACATC
GTCTGTGCGGCAAGGACGAAGACGAAGAAATCTTGGGCAGCTCGGACCTG
ACGATGTACTTGGCTTACAATACACCACCAACCATACGCCACACTACACA
CAGGTCATACCACTGTGTATCCTAGTCACTCTCGCATAAGCTTGTCAAGT
CGCCGCCGCTTCTCAACGAGTATTTTTTTACCAAGCCGACCCACGAGAGG
AAAAAAGAGAAGGCTCGTTTTCTTCGGAGCACCTCCTGCTCCACCACCGC
CACTGCGACAAAGCAAGCACCACCACCACGCGAACAATACAACATACGGA
GCATGGCTGATATTTCTGTTACCCCTATAGAAGACGCCGTCGAAACTGTG
GCCCTTTCCCCCATGCCTGTGATCGAGCAGGAACAAGAACACCAGCAGCT
GAAGCACGAGGCTCCCGATCAAGAAGGACTGCAGCAGCAGGAAGACCATC
AGCACCAAGTGCACCAGCAAGAACAAGAGCAACATCAGCCGAAGATAGAT
GTGCACGAACCCCCACAATCCGCGCCGTTCGTGGCTCCCGGTGAGGTGGA
CGTGGTGCCTGCGCCTCTGATCCTCTCGCAGCTCCCATGCATGCCTTCCA
AAGGCCCCACCTCGACTATTGCCACCAGGAAAAGCAGCATTTTAAGTGGC
GGCACAGGAAACCAAGGCCGATGGACAGAAGCAGAACATGAGTTGTTCTT
GGAGGGCATTGATACGTATGGGAAGGGGGCGTGGAAGGTGATTAGTGAGA
AGGTTGTCAAGTCCCGGAGTGCGGAGCAGGTGAGGATACACGCGCAGAAG
TATTTCCTACGGCAGACAAAGCAGCAGAGCAAGAAGAAAAATGACGATGT
CGCTGGTAGTTGTACTTTCAGGGGGGGAGGAGGGGCAGCGGGTGGGGCAG
GAGGAGGAGGGGAGGGTGGAGTCGCGGATGGAGAGGGGAAGACCAAGGCG
GGAGGGAAGAGCAGCAAGGAAGGGCATTGGACAGACGAGGAGCACGAACT
ATTCTTGAAGTGCTGGGAAAAGTACGGCAAAAGCTGGAAGAAATTAAGTG
AGATCATAACGACGCGGACGAACGAACAAATCCGGACCCATGCCCAGAAA
TATTTTGCGAAATTGCGCGAACTGAGAGAGAGGGGGTACTCTGGTGCCTA
TTACATGGACGGCACGAGGCATTTGACAAAGACCTTTTTGGGTGTTGCCG
GTGGTGGTGGTGGGGGTCGGGGCGGGGCTGCACATGGGCCGGTGGCGGGC
GGGGGGCGGGGGGGAGGGAGGGGAGGGAGAAGAGGGGGCAGAGGGGGAGG
AGGGGGTAAGCCGAGAGTGAGGGTGTGGGGAGGAAGAGGGGGTGGGAGGA
AAGGGAGAGAAAGCGAGAGTGATGAGGAGGAAGGCATGATGGAGGGAGGT
GCAGAGGAGGAGGAAGAAGATGAGGAGGAGGACTTCGGGGCGGTGTATAT
GGAGGGGGAGGGCGAGGACGAGGACGAGGACGAGGACGAGGACGTGATGG
ACGAAAGCGAGGATGAGGAACACGACTATGATGACCAAGGTAGAGGGTGT
TTGAGAGGGAGTGATCGGAGTGTGCGGAACACGAGCACTAGGAAACGGGG
GACGAAGCGTCGCCGAGTGGCCGGGGGAGGGGAGGAAGAAGGCAGCATCC
CGGCCGTTTCGGGTAACGGTCGGCGACGAGGTGGAAGGCGGGCAGACTCT
CCTACCTCTCCCTCCGCATCTTCCTCTATCTCCTTGCCACGCGGAACGGC
AGCAACGACAGCAGCAGCGTCGGCAGCGGCAGCAGCAGCAGCAGCAGCAG
CAGCGGCCGCAGTAGGGGGAGCAGGTCCCGCGGACAAAGGGAGAAATGGT
GGGAAAAAGGGAAGGCGGAAGGGGGCCTTGCTGTCACAGAATACAGAGAT
GGAGGCCGCCAAGTCTCTGATGAGCATCATTGCCGCGGCGGAAGAGGACG
AGGATGATGAAGGGGGGGAGGGGGGGAAGGAGGGAGGGGCGGACAGGAAA
GACTGTGGGCCGACCCGACGAGAGGAGGGAGAGAAGGAGGGAGAGGTGGC
ATCGGTAGTTTCTGAGGCTGAGGGAGACGGGGGAATGGTGTCGTCCCCGA
TGGGGGAGGACATGTTCGTTCCTCCTCCTTTGTTGAATGGAGAGGAGGTT
GAGATTGCTGTGTGTGCCATATCTCAGGTTTCGCCTCCCTTGGTCCAGCA
GCAGCAGCAGCAGCAGCAGCAGCTGCAGTCTTCATTGGATTCGCCTCCTG
CGGTGCAACAGCAGCAACCGCAACAGCAACAGCATGAGAAGGAAGAAAAG
GGAGGGGTAGAGGTAGAGGTGGAGGAAGGGGGGGGAGGGGTAACGGCAGA
AGCGGCGGGGCTGGCGGGGATGGCCTCGCCCGGGGATATGATAGAGGTGT
AA back to topCoding sequence (CDS) from alignment at chr2:190814..193665- >NO02G00550.1 ID=NO02G00550.1|Name=NO02G00550.1|organism=Nannochloropsis oceanica|type=CDS|length=2100bp|location=Sequence derived from alignment at chr2:190814..193665- (Nannochloropsis oceanica) ATGGCTGATATTTCTGTTACCCCTATAGAAGACGCCGTCGAAACTGTGGC CCTTTCCCCCATGCCTGTGATCGAGCAGGAACAAGAACACCAGCAGCTGA AGCACGAGGCTCCCGATCAAGAAGGACTGCAGCAGCAGGAAGACCATCAG CACCAAGTGCACCAGCAAGAACAAGAGCAACATCAGCCGAAGATAGATGT GCACGAACCCCCACAATCCGCGCCGTTCGTGGCTCCCGGTGAGGTGGACG TGGTGCCTGCGCCTCTGATCCTCTCGCAGCTCCCATGCATGCCTTCCAAA GGCCCCACCTCGACTATTGCCACCAGGAAAAGCAGCATTTTAAGTGGCGG CACAGGAAACCAAGGCCGATGGACAGAAGCAGAACATGAGTTGTTCTTGG AGGGCATTGATACGTATGGGAAGGGGGCGTGGAAGGTGATTAGTGAGAAG GTTGTCAAGTCCCGGAGTGCGGAGCAGGTGAGGATACACGCGCAGAAGTA TTTCCTACGGCAGACAAAGCAGCAGAGCAAGAAGAAAAATGACGATGTCG CTGGTAGTTGTACTTTCAGGGGGGGAGGAGGGGCAGCGGGTGGGGCAGGA GGAGGAGGGGAGGGTGGAGTCGCGGATGGAGAGGGGAAGACCAAGGCGGG AGGGAAGAGCAGCAAGGAAGGGCATTGGACAGACGAGGAGCACGAACTAT TCTTGAAGTGCTGGGAAAAGTACGGCAAAAGCTGGAAGAAATTAAGTGAG ATCATAACGACGCGGACGAACGAACAAATCCGGACCCATGCCCAGAAATA TTTTGCGAAATTGCGCGAACTGAGAGAGAGGGGGTACTCTGGTGCCTATT ACATGGACGGCACGAGGCATTTGACAAAGACCTTTTTGGGTGTTGCCGGT GGTGGTGGTGGGGGTCGGGGCGGGGCTGCACATGGGCCGGTGGCGGGCGG GGGGCGGGGGGGAGGGAGGGGAGGGAGAAGAGGGGGCAGAGGGGGAGGAG GGGGTAAGCCGAGAGTGAGGGTGTGGGGAGGAAGAGGGGGTGGGAGGAAA GGGAGAGAAAGCGAGAGTGATGAGGAGGAAGGCATGATGGAGGGAGGTGC AGAGGAGGAGGAAGAAGATGAGGAGGAGGACTTCGGGGCGGTGTATATGG AGGGGGAGGGCGAGGACGAGGACGAGGACGAGGACGAGGACGTGATGGAC GAAAGCGAGGATGAGGAACACGACTATGATGACCAAGGTAGAGGGTGTTT GAGAGGGAGTGATCGGAGTGTGCGGAACACGAGCACTAGGAAACGGGGGA CGAAGCGTCGCCGAGTGGCCGGGGGAGGGGAGGAAGAAGGCAGCATCCCG GCCGTTTCGGGTAACGGTCGGCGACGAGGTGGAAGGCGGGCAGACTCTCC TACCTCTCCCTCCGCATCTTCCTCTATCTCCTTGCCACGCGGAACGGCAG CAACGACAGCAGCAGCGTCGGCAGCGGCAGCAGCAGCAGCAGCAGCAGCA GCGGCCGCAGTAGGGGGAGCAGGTCCCGCGGACAAAGGGAGAAATGGTGG GAAAAAGGGAAGGCGGAAGGGGGCCTTGCTGTCACAGAATACAGAGATGG AGGCCGCCAAGTCTCTGATGAGCATCATTGCCGCGGCGGAAGAGGACGAG GATGATGAAGGGGGGGAGGGGGGGAAGGAGGGAGGGGCGGACAGGAAAGA CTGTGGGCCGACCCGACGAGAGGAGGGAGAGAAGGAGGGAGAGGTGGCAT CGGTAGTTTCTGAGGCTGAGGGAGACGGGGGAATGGTGTCGTCCCCGATG GGGGAGGACATGTTCGTTCCTCCTCCTTTGTTGAATGGAGAGGAGGTTGA GATTGCTGTGTGTGCCATATCTCAGGTTTCGCCTCCCTTGGTCCAGCAGC AGCAGCAGCAGCAGCAGCAGCTGCAGTCTTCATTGGATTCGCCTCCTGCG GTGCAACAGCAGCAACCGCAACAGCAACAGCATGAGAAGGAAGAAAAGGG AGGGGTAGAGGTAGAGGTGGAGGAAGGGGGGGGAGGGGTAACGGCAGAAG CGGCGGGGCTGGCGGGGATGGCCTCGCCCGGGGATATGATAGAGGTGTAA back to top
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