NO02G00490.1, NO02G00490.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G00490.1
Unique NameNO02G00490.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1288
Alignment locationchr2:167110..168946 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:167110..168946 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G00490.1 vs.
Match: XP_002293557.1 (predicted protein [Thalassiosira pseudonana CCMP1335]; EED89293.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 426.0 bits (1094), Expect = 7.900e-116
Identity = 204/247 (82.59%), Postives = 226/247 (91.50%), Query Frame = 0 
Query:    1 MKGGAKVVIEAHRHEGVFIARSKEDALVTLNSTPGKDVYGEKRIQVEGPPGPEGVATKLEYRVWNPFRSKLAAAILGGVDHIWMGPGSKVLYLGAASGTTVSHVSDIVGPTGCVYAVEFSHRPGRDLINMAKLRTNVIPIVEDARHPLKYRMLVGMVDTIFADVAQPDQARIVSLNSHYFLKNGGHVVVSVKASCIDSTAAPEAVFQKEVKKLQEEKFKPLEQLTLEPYERDHAVVVATYRPAPKAK 248
            MKGG+KVVIE HRHEGVFIAR KEDALVTLNSTPG  VYGEKRI VE PPGP+G  TK+EYRVWNPFRSK+AAAILGGVD+IW+ PGSKVLYLGAA+GT+VSHVSDIVGP G VYAVEFSHRPGRDL+N+AK RTNVIPI+EDARHPLKYRMLVGMVD +FAD+AQPDQARIV+LNSHYFLKNGGH V+++KASCIDSTAAPEAVF++EV KLQ E FKPLEQLTLEPYERDH V++A YRP+ K K
Sbjct:   55 MKGGSKVVIEPHRHEGVFIARGKEDALVTLNSTPGVAVYGEKRISVETPPGPDGNTTKVEYRVWNPFRSKIAAAILGGVDNIWIKPGSKVLYLGAAAGTSVSHVSDIVGPKGAVYAVEFSHRPGRDLLNVAKARTNVIPIIEDARHPLKYRMLVGMVDCVFADIAQPDQARIVALNSHYFLKNGGHSVIAIKASCIDSTAAPEAVFRREVSKLQSENFKPLEQLTLEPYERDHCVLIAQYRPSKKKK 301
The following BLAST results are available for this feature:
BLAST of NO02G00490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_002293557.17.900e-11682.59predicted protein [Thalassiosira pseudonana CCMP13... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G00490NO02G00490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G00490.1NO02G00490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G00490.1.cds1NO02G00490.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00490.1.cds2NO02G00490.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00490.1.cds3NO02G00490.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G00490.1 ID=NO02G00490.1|Name=NO02G00490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1288bp
GGCGGCGTCGAGTGCGCGAAAAAAGTATCTAGGGCATGGCTGAGGGGATT
GGTCTCAAGGCACGGCCATCAACACGGGCAGCCAGGAACGCTAGCTGGCT
TATTTGTTGGTTGGTTTGTGTCTTGCGCATGCATGGATAGTAAGGATTCT
CTGTTGTCCATCCAGATGCTCGACCCCACCTTCTTGTATTGTCCCCTCTC
CTCTCTCAAATCTCACTCACGACCCCCACCCACCCACCGCTCTTGATCCT
CTCCACACAGCACTGGCAACATAAGAACTTACAGAGAGGAACAACAACCA
CAGCAGTAACCATGATGAGCAGAGGAGGCGGCCGAGGCCGCGGTGGCCCG
GGTGGCTTCCGCGGAGGTGGCGGTGGACGAGGTGGTGGCGGACGTGGGGG
TGGTTTTGGTGGGGGTCGTGGTGGGGGTGGACGTGGCTTTGGTGGCGGGC
GTGGCGCTCCCCGAGGGGGCGGCCGTGGAGCCCCTCGAGGACGAGGAGGA
GGCCGAGGGGGAGGTCGAGGAGGTGGACGCGGGGGGGGGGAATGAAGGGA
GGGGCAAAGGTAGTGATTGAGGCCCACCGGCACGAAGGAGTATTTATCGC
CCGAAGTAAAGAGGATGCCTTAGTGACGCTCAACAGCACGCCAGGAAAGG
ACGTGTATGGGGAGAAGAGAATCCAGGTGGAAGGGCCACCAGGACCGGAG
GGAGTGGCGACCAAGCTCGAATACCGTGTTTGGAATCCCTTCCGGTCGAA
GCTGGCTGCGGCGATCTTGGGAGGTGTCGACCACATATGGATGGGGCCGG
GGAGCAAGGTGTTGTATCTGGGGGCAGCGAGCGGGACGACAGTAAGCCAC
GTGTCAGATATTGTGGGGCCGACGGGCTGTGTGTACGCGGTGGAGTTCTC
GCACCGCCCGGGGCGGGATTTGATCAACATGGCCAAGCTGCGGACGAATG
TGATTCCAATCGTGGAGGATGCACGACACCCGTTGAAGTACCGCATGCTA
GTCGGCATGGTTGACACGATCTTCGCCGACGTGGCCCAGCCGGATCAGGC
CCGAATCGTCTCGCTGAACTCCCACTACTTCCTCAAAAATGGCGGTCATG
TCGTGGTGTCGGTCAAGGCGTCCTGTATTGATTCCACTGCTGCCCCTGAA
GCAGTATTCCAAAAAGAGGTGAAGAAGCTACAAGAAGAGAAATTCAAGCC
ACTGGAGCAGCTGACGCTCGAGCCTTACGAGCGAGATCACGCGGTGGTCG
TTGCCACCTACAGGCCCGCGCCCAAGGCCAAGAAATAG
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protein sequence of NO02G00490.1

>NO02G00490.1-protein ID=NO02G00490.1-protein|Name=NO02G00490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=249bp
MKGGAKVVIEAHRHEGVFIARSKEDALVTLNSTPGKDVYGEKRIQVEGPP
GPEGVATKLEYRVWNPFRSKLAAAILGGVDHIWMGPGSKVLYLGAASGTT
VSHVSDIVGPTGCVYAVEFSHRPGRDLINMAKLRTNVIPIVEDARHPLKY
RMLVGMVDTIFADVAQPDQARIVSLNSHYFLKNGGHVVVSVKASCIDSTA
APEAVFQKEVKKLQEEKFKPLEQLTLEPYERDHAVVVATYRPAPKAKK*
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mRNA from alignment at chr2:167110..168946-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G00490.1 ID=NO02G00490.1|Name=NO02G00490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1837bp|location=Sequence derived from alignment at chr2:167110..168946- (Nannochloropsis oceanica)
GGCGGCGTCGAGTGCGCGAAAAAAGTATCTAGGGCATGGCTGAGGGGATT
GGTCTCAAGGCACGGCCATCAACACGGGCAGCCAGGAACGCTAGCTGGCT
TATTTGTTGGTTGGTTTGTGTCTTGCGCATGCATGGATAGTAAGGATTCT
CTGTTGTCCATCCAGATGCTCGACCCCACCTTCTTGTATTGTCCCCTCTC
CTCTCTCAAATCTCACTCACGACCCCCACCCACCCACCGCTCTTGATCCT
CTCCACACAGCACTGGCAACATAAGAACTTACAGAGAGGAACAACAACCA
CAGCAGTAACCATGATGAGCAGAGGAGGCGGCCGAGGCCGCGGTGGCCCG
GGTGGCTTCCGCGGAGGTGGCGGTGGACGAGGTATGCAACATATCTCTCT
CCTTCTCCCCTTTCCCTTCCACTTTCACTTGTCCTTCAAATGCGGTTCGT
AAGCCAACGCGATTGAATGTTCAGATGTTTGACGGAACATTGTTGCTGCT
CAGATGCGAAGAATGCGTGTATCGGTCCGCGTCAGGTGGTCGCACCTCTG
TACCTCTGCCTCCTTTCCTATGTCACACGAATTCTCATGCCTTTCCATTT
TACTTCCTCCTCTCTCCAGGTGGTGGCGGACGTGGGGGTGGTTTTGGTGG
GGGTCGTGGTGGGGGTGGACGTGGCTTTGGTGGCGGGCGTGGCGCTCCCC
GAGGGGGCGGCCGTGGAGCCCCTCGAGGACGAGGAGGAGGCCGAGGGGGA
GGTCGAGGAGGTGGACGCGGGGGGGGGGAATGAAGGGAGGGGCAAAGGTA
GTGATTGAGGCCCACCGGCACGAAGGAGTATTTATCGCCCGAAGTAAAGA
GGATGCCTTAGTGACGCTCAACAGCACGCCAGGAAAGGACGTGTATGGGG
AGAAGAGAATCCAGGTGGAAGGGCCACCAGGACCGGAGGGAGTGGCGACC
AAGCTCGAATACCGTGTTTGGAATCCCTTCCGGTCGAAGCTGGCTGCGGC
GATCTTGGGAGGTGTCGACCACATATGGATGGGGCCGGGGAGCAAGGTGT
TGTATCTGGGGGCAGCGAGCGGGACGACAGTAAGCCACGTGTCAGATATT
GTGGGGCCGACGGGCTGTGTGTACGCGGTGGAGTTCTCGCACCGCCCGGG
GCGGGATTTGATCAACATGGCCAAGCTGCGGACGAATGTGATTCCAATCG
TGGAGGATGCACGACACCCGTTGAAGTACCGCATGCTAGGTAGGCTGAGA
GGATTGGAGAAGCACAGAGAGGGAAGGTGGAAAGGATTTGGATTTTTGAG
CCCTTGTCTCCTTTATGTAGGTAAATTTTCACATCCCTTCCCCTCCCTCC
CTCCCTGTCTCCCGCCCTCCCGCAGTCGGCATGGTTGACACGATCTTCGC
CGACGTGGCCCAGCCGGATCAGGCCCGAATCGTCTCGCTGAACTCCCACT
ACTTCCTCAAAAATGGCGGTCATGTCGTGGTGTCGGTCAAGGCGTCCTGT
ATTGATTCCACTGCTGCCCCTGAAGCAGTATTCCAAAAAGAGGTAATATA
TATGCATATGGCCTTGCCATTCCCCCCCCTATTCCTCCCTCTCTCCCTTT
TTTACGACTTTTTATTTTTCGACTGGGGCTTGGTGCAATTTCTGCTCTTA
AGAAATTTAGAGACACCTTCAGATTCACTCACCCTCCTCCGCTCCCTCCC
TCTCTCACCCCCATTAGGTGAAGAAGCTACAAGAAGAGAAATTCAAGCCA
CTGGAGCAGCTGACGCTCGAGCCTTACGAGCGAGATCACGCGGTGGTCGT
TGCCACCTACAGGCCCGCGCCCAAGGCCAAGAAATAG
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Coding sequence (CDS) from alignment at chr2:167110..168946-

>NO02G00490.1 ID=NO02G00490.1|Name=NO02G00490.1|organism=Nannochloropsis oceanica|type=CDS|length=747bp|location=Sequence derived from alignment at chr2:167110..168946- (Nannochloropsis oceanica)
ATGAAGGGAGGGGCAAAGGTAGTGATTGAGGCCCACCGGCACGAAGGAGT
ATTTATCGCCCGAAGTAAAGAGGATGCCTTAGTGACGCTCAACAGCACGC
CAGGAAAGGACGTGTATGGGGAGAAGAGAATCCAGGTGGAAGGGCCACCA
GGACCGGAGGGAGTGGCGACCAAGCTCGAATACCGTGTTTGGAATCCCTT
CCGGTCGAAGCTGGCTGCGGCGATCTTGGGAGGTGTCGACCACATATGGA
TGGGGCCGGGGAGCAAGGTGTTGTATCTGGGGGCAGCGAGCGGGACGACA
GTAAGCCACGTGTCAGATATTGTGGGGCCGACGGGCTGTGTGTACGCGGT
GGAGTTCTCGCACCGCCCGGGGCGGGATTTGATCAACATGGCCAAGCTGC
GGACGAATGTGATTCCAATCGTGGAGGATGCACGACACCCGTTGAAGTAC
CGCATGCTAGTCGGCATGGTTGACACGATCTTCGCCGACGTGGCCCAGCC
GGATCAGGCCCGAATCGTCTCGCTGAACTCCCACTACTTCCTCAAAAATG
GCGGTCATGTCGTGGTGTCGGTCAAGGCGTCCTGTATTGATTCCACTGCT
GCCCCTGAAGCAGTATTCCAAAAAGAGGTGAAGAAGCTACAAGAAGAGAA
ATTCAAGCCACTGGAGCAGCTGACGCTCGAGCCTTACGAGCGAGATCACG
CGGTGGTCGTTGCCACCTACAGGCCCGCGCCCAAGGCCAAGAAATAG
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Synonyms
Publications