NO02G00470.1, NO02G00470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G00470.1
Unique NameNO02G00470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2537
Alignment locationchr2:158532..162734 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:158532..162734 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G00470.1 vs.
Match: EWM30618.1 (protein of unknown function DUF1214, partial [Nannochloropsis gaditana])

HSP 1 Score: 195.7 bits (496), Expect = 3.400e-46
Identity = 89/116 (76.72%), Postives = 101/116 (87.07%), Query Frame = 0
Query:  326 AEGYYDVFNYEQHAVSSVIGEKGVFTPSAWETEAFGKDFPEAMPGDSYILKFDKYKIPGVNEGGAGFWSITAYSLPDRKLVPNVLDRYSIQSTNPDLVYNKDGSLEIYMQANAPPQ 442
            + GY+DV NYEQHAV SVIGE GVFTPSAWETEAF KDFP+A+PGDSYILKFDK KIPGVN+ GAGFWS+TAYSLP R LVPN LDRYSIQST+P+L +N DGSLEI++Q + P Q
Sbjct:    6 SSGYFDVLNYEQHAVCSVIGENGVFTPSAWETEAFAKDFPDALPGDSYILKFDKNKIPGVNQEGAGFWSVTAYSLPGRTLVPNALDRYSIQSTDPNLKFNNDGSLEIFLQTDPPGQ 121          
The following BLAST results are available for this feature:
BLAST of NO02G00470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30618.13.400e-4676.72protein of unknown function DUF1214, partial [Nann... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G00470NO02G00470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G00470.1NO02G00470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G00470.1.cds1NO02G00470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00470.1.cds2NO02G00470.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00470.1.cds3NO02G00470.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00470.1.cds4NO02G00470.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00470.1.cds5NO02G00470.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00470.1.cds6NO02G00470.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00470.1.cds7NO02G00470.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00470.1.cds8NO02G00470.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00470.1.cds9NO02G00470.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00470.1.cds10NO02G00470.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G00470.1 ID=NO02G00470.1|Name=NO02G00470.1|organism=Nannochloropsis oceanica|type=mRNA|length=2537bp
CCGAGCTAATACATTGGAAGGGAAGGGCTATTCAGCCAACAATTGTTGCT
CGGCATGCGCAGTGCGCGCTGGCATCTGGTCGTAAAAGAAGAGCGCTATA
ATGCAAGAGACAAGAGAGCTTGGCCACCGCTTTCACACATCATATATGTC
TCGTGGAGGTCGGAACCCGTAAGGAAAAGCACATGCGTAGGCTTGACTTA
TTTGCGGGAGGGTCCAAATATTTTTCTCATGGCCGCATCGACAAACAGGA
TCTTTCCTACTATTCCCCGCAAGGAGGCGCCTGGCGGCATCACACCAGAT
ACTTGTAAGGAGGAAAAAGTGTCATGCCGAGCCTTTGCAAACTTGTGGGT
TGAGCATGCAAGGCCTAGCTACCTCGCAGTTGGGTGGGAGAAGGACTTTG
CCTAGGTGGCAAGCCTTTCCCTTTGCCAACCCGGGCCCCACGGGGATGTG
CTGTACCTTGTACCGTGGGGCGATATATGCAACTCTCATCTTGTTAATGG
CCTCACGCATCTCTACAAGCATATTTGGCTGAGTACAAGGACATGTGGAT
GCCAAACGCTGTGCCTACCGAGGTCATCGCTCTGGAACATCGTGAAACAA
TACGGCGCCAGTCTCCACTCTATCACCACACAATGGTTTATCCCTTCCTC
CTCATTCCCCTCCACATCACCAACTTACAGTGCACATCAGAGTGGCAGAG
ATGCGACATTTTTCTCTGGCCCGCCCCGTCACGGGGCTGGTGGCCGCCAT
GGCCTTCCTCTTCCTCCTGGCCGGGACTTCGACCACCGAAGCTGTTTCAG
CCGCTACCGCTAAGAACTTGACCCGCGTGGGCTACATCTACACGTACCCG
ATCATGCTTACGTACCGGGAGATGTACGCGGACATTATCGCCAAGGGGCC
GCCTTACAAGTTTAATCAATTTGTCATCCAAGAAAAGCTGCCCGATCCCA
AGACGGCCGGCCCCAACGCGGACGTGGACTTCCTGACGGCCACCGCTTGG
CTCGACACCCGCGATAACCCCATAGTGCTGACCGTGCCCGAGCCAGACCA
CCCAGACCGCTACATGTCGGTGCAAACCACGCACATGAAGGGCTATGAAA
CTGACTACGTGAGCACGCGCATGAGCGGGATGAAGGATGTCTCGGCCCGG
TATTATATCCAGAGTCCCGCCACCGTCCTTAAGACCGATCCGGGTGGCAT
GTTCAAGAATATTCTCTACTCGGACTCGGACTTCACGCGGGTGCAAGCCC
GGGTGGGACCCATCACCAGCGCCGCCGACGTGACGGCTGCCAAGAATTTG
TTGGCTGAGTTCAAGGTGACGCCACTCCCGGACTTCCTTCGCATGCAGAT
CGGACCCGAGCCCAACTTGAAGTCCAAGCCCTTGACGCCCCCTCCCACGT
TCTACAAGTGGAACGACGACTTGCTCAAGGGCGGGAATAATTTGGAGTGG
ATTAACTTTTTGAACTGGGTCTTGCCCTACGTCAAGATCCACAAAGGAAA
CGAGACTCAATTCATTGAGGACATGGCTGCCGTCGGGGTTAATCCGGGGA
AATACACCGAGCTATCCATGTACCCCCCCGCCACGCTGGAGGCGATGGAG
GAGGGCGTGAAGGAGGGCTATGACTTTATGCACGATCCGGCCAACGCGGC
CCGGTTCGCAGGCACGGACAAGCTCGCGGAAGGGTACTACGATGTGTTTA
ACTATGAGCAACATGCCGTCAGCTCCGTCATCGGAGAGAAGGGAGTCTTC
ACCCCCTCGGCGTGGGAGACGGAGGCCTTCGGGAAGGATTTTCCCGAGGC
CATGCCAGGGGACTCCTACATCCTCAAATTCGACAAGTATAAGATACCCG
GTGTTAACGAGGGCGGCGCTGGCTTTTGGTCCATCACTGCCTACAGTCTG
CCCGACCGCAAGCTCGTGCCCAACGTCCTCGACCGTTACTCGATTCAAAG
CACAAACCCCGACCTGGTTTACAACAAGGACGGCTCCCTCGAGATCTACA
TGCAGGCGAATGCCCCCCCCCAGAGCATCAAGGCAATTGGCTGCCTATTC
CCGCCAGTGGCCCATTTGGCTACGTCCTTCGCATCAACGGTCCAGGCGGG
AACGCCAAGCCCATCAGCGAACTCAAGGCCCCTCTGAGGCCTGACGCCGT
TTCTCCAGTCGCCATCCGTGCGGCAGCTGGCGGTCCTCCTGTCACCCACG
CTGCTGCTTCTGCTGCCGTGGTTCCTCCTACTGCTGCTGCTGCTACTGCT
ACAGCTGCCACAGGCTCCAAAACTCCTCCCAAAAAGGGTCTGCGGAAGTA
AACGAAGAGCGGGAGGAAGGGGGAAGGGAGGGAGGGAGAAGGGGAGGAAA
GGAGGACGAGAGACTGATGACAATGATGGGCGTGTATCTATATAAACAAG
AAAGTGGGAAAGGCGGGAGGGAAGGAGGGAAAAAAAGAAGGGAGGGCGGG
GGGCTAAGCATTCTATCCTCTTTGTGTGGTGAGCATTGAATGGGATAACG
GAGGAAGAGAGGGAGGGAGACAGGGAGGGAGGGAGGG
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protein sequence of NO02G00470.1

>NO02G00470.1-protein ID=NO02G00470.1-protein|Name=NO02G00470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=479bp
MRHFSLARPVTGLVAAMAFLFLLAGTSTTEAVSAATAKNLTRVGYIYTYP
IMLTYREMYADIIAKGPPYKFNQFVIQEKLPDPKTAGPNADVDFLTATAW
LDTRDNPIVLTVPEPDHPDRYMSVQTTHMKGYETDYVSTRMSGMKDVSAR
YYIQSPATVLKTDPGGMFKNILYSDSDFTRVQARVGPITSAADVTAAKNL
LAEFKVTPLPDFLRMQIGPEPNLKSKPLTPPPTFYKWNDDLLKGGNNLEW
INFLNWVLPYVKIHKGNETQFIEDMAAVGVNPGKYTELSMYPPATLEAME
EGVKEGYDFMHDPANAARFAGTDKLAEGYYDVFNYEQHAVSSVIGEKGVF
TPSAWETEAFGKDFPEAMPGDSYILKFDKYKIPGVNEGGAGFWSITAYSL
PDRKLVPNVLDRYSIQSTNPDLVYNKDGSLEIYMQANAPPQSIKAIGCLF
PPVAHLATSFASTVQAGTPSPSANSRPL*
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mRNA from alignment at chr2:158532..162734-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G00470.1 ID=NO02G00470.1|Name=NO02G00470.1|organism=Nannochloropsis oceanica|type=mRNA|length=4203bp|location=Sequence derived from alignment at chr2:158532..162734- (Nannochloropsis oceanica)
CCGAGCTAATACATTGGAAGGGAAGGGCTATTCAGCCAACAATTGTTGCT CGGCATGCGCAGTGCGCGCTGGCATCTGGTCGTAAAAGAAGAGCGCTATA ATGCAAGAGACAAGAGAGCTTGGCCACCGCTTTCACACATCATATATGTC TCGTGGAGGTCGGAACCCGTAAGGAAAAGCACATGCGTAGGCTTGACTTA TTTGCGGGAGGGTCCAAATATTTTTCTCATGGCCGCATCGACAAACAGGA TCTTTCCTACTATTCCCCGCAAGGAGGCGCCTGGCGGCATCACACCAGAT ACTTGTAAGGAGGAAAAAGTGTCATGCCGAGCCTTTGCAAACTTGTGGGT TGAGCATGCAAGGCCTAGCTACCTCGCAGTTGGGTGGGAGAAGGACTTTG CCTAGGTGGCAAGCCTTTCCCTTTGCCAACCCGGGCCCCACGGGGATGTG CTGTACCTTGTACCGTGGGGCGATATATGCAACTCTCATCTTGTTAATGG CCTCACGCATCTCTACAAGCATATTTGGCTGAGTACAAGGACATGTGGAT GCCAAACGCTGTGCCTACCGAGGTCATCGCTCTGGAACATCGTGAAACAA TACGGCGCCAGTCTCCACTCTATCACCACACAATGGTTTATCCCTTCCTC CTCATTCCCCTCCACATCACCAACTTACAGTGCACATCAGAGTGGCAGAG ATGCGACATTTTTCTCTGGCCCGCCCCGTCACGGGGCTGGTGGCCGCCAT GGCCTTCCTCTTCCTCCTGGCCGGGACTTCGACCACCGAAGCTGTTTCAG CCGCTACCGCTAAGAACTTGACCCGCGTGGGCTACATCTACACGTACCCG ATCATGCTTACGTACCGGGAGATGTACGCGGACATTATCGCCAAGGGGCC GCCTTACAAGTTTAATCAATTTGTCATCCAAGAAAAGCTGCCCGATCCCA AGGTCCGTCCGCCTCACATCTTCCTTCCTTCCTTTATCAACTCGCTCCCC TTTTCCTTCCAAATCGTTCGGTATTGTTTCTTTTCTCATCTTTTCCTTCC CATCTCATCGTTGCACACAGACGGCCGGCCCCAACGCGGACGTGGACTTC CTGACGGCCACCGCTTGGCTCGACACCCGCGATAACCCCATAGTGCTGAC CGTGCCCGAGCCAGACCACCCAGACCGCTACATGTCGGTGCAAACCACGC ACATGAAGGGCTATGAAACTGACTACGTGAGCACGCGCATGAGGTAGGAA GAGAGGGAGGACGCGAGGGTATGGAGGGAAGCACGTTAAAGAGATGACAC CAGTAGGAGAACCCGCCACGGATTTACATGCATACATCCATTTCCCCCAC CTACATACAATCGTGACTGCCACTCACCCATTTCCTCATCCTCCGTACAC CCACACACGGTCACGATGACCCAGCGGGATGAAGGATGTCTCGGCCCGGT ATTATATCCAGAGTCCCGCCACCGTCCTTAAGACCGATCCGGGTGGCATG TTCAAGGTACGCAAATTAACTCTCACCCCCTGTCAACGACTCTCCCACTA TCTCTTCCTCCTCCCCCCACTCCCTAAATCTTACCCTTTCCTACCTCCCT CCCTTTTTGTGGAAATGCAGAATATTCTCTACTCGGACTCGGACTTCACG CGGGTGCAAGCCCGGGTGGGACCCATCACCAGCGCCGCCGACGTGACGGC TGCCAAGAATTTGTTGGCTGAGTTCAAGGTAAATGCGGGAGGGAGGGAGG TATACGCAGGAGGAAGGGAGAGAGGATGGAAAGGGGGTAAGCACGTTCCG CCTGGTGCACTCTTTGAACATCTTATCAACGATGAATTGGCTGGTTTTGT CTTGATACTCGTACATGAGAACCACACGTCCCTCCCTCTCCCCATCCCAC CCTCCTCTCACTTATTTACTCATGTATGGTCTTTCGGTCTCGGTCCTTTT TACTCTGATAAAAGATATGTCCATAAACAATTACCACATGACCTTCACCC CTCCCGTCCGCCCACCCTGCCCCCCTCCCTCCCTCCCTCCCTCCCTAGGT GACGCCACTCCCGGACTTCCTTCGCATGCAGATCGGACCCGAGCCCAACT TGAAGTCCAAGCCCTTGACGCCCCCTCCCACGTTCTACAAGTGGAACGAC GACTTGCTCAAGGGCGGGAATAATTTGGAGTGGATTAACTTTTTGAACTG GGTCTTGCCCTACGTCAAGATCCACAAAGGGTGAGTCCCTCCCTCCCTCC CTCCCTCCCTCCCTCCCTCCCTCCCGTGTATCCGGTGTCTCTTTCTCTTT CTCTTGCTTCTCCGTATCTTTCCCCTTCAAGCGCTGATCCTTCCTTCCTT CCTTTGCAACCAACCTCCCTCCCTCCCTTTAGAAACGAGACTCAATTCAT TGAGGACATGGCTGCCGTCGGGGTTAATCCGGGGAAATACACCGAGCTAT CCATGTACCCCCCCGCCACGCTGGAGGCGATGGAGGAGGGCGTGAAGGAG GGCTATGACTTTATGCACGATCCGGCCAACGCGGCCCGGTTCGCAGGCAC GGACAAGCTCGCGGAAGGTGGGTCTTGAAGGGAGGGAGGGAGGGAGGGAG GAAGGGAGGGAGGAAGGGAGGGAGGAAGGGAGGGAGGAAGGGAGGGAAGA AGGTTAACAACTGACAAGGGGCGGGAGACGTCGGTCCGGAAGACCATAAA TTCCTCACATCTTCCTACCTTCTCTCCCTCCCTCCCTCCCTCCCTTGGTG CCACTCAGGGTACTACGATGTGTTTAACTATGAGCAACATGCCGTCAGCT CCGTCATCGGAGAGAAGGGAGTCTTCACCCCCTCGGCGTGGGAGACGGAG GCCTTCGGGAAGGATTTTCCCGAGGCCATGCCAGGGGACTCCTACATCCT CAAATTCGACAAGTATAAGATACCCGGTGTTAACGAGGTACGGCGTTTTT GTGTCTTGGTTCCCTCCGTCCTCCCCTCCTCCCTCCCTCCCACCCTCCCT TTCAATCTCTATTGTCCTCTTTTTTCCCTTCTTGTCCTCCTTTCCCTCTT TTTCTCCCTCCCGACTTCAGCCACCGGATCGATCGCTTCTGCCACCTTTC TTAACCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCCCAGGGCG GCGCTGGCTTTTGGTCCATCACTGCCTACAGTCTGCCCGACCGCAAGCTC GTGCCCAACGTCCTCGACCGTTACTCGATTCAAAGCACAAACCCCGACCT GGTTTACAACAAGGACGGCTCCCTCGAGATCTACATGCAGGCGAATGCCC CCCCCCAGAGCATCAAGGTAGGGAGGGAGGGAGGAAAGAAGGAGGAAAGG AAGAGGAAAGGAGGAAAGGAGGGATGAAAGAAGGAGGGAAGGAGGGAAGG AGGGAGGGAGGAAGAGAGGGAAGGAAGAGGAGATGATGACCCATGCCACC GAAGAGGAGATGATGACCCATGCCACCACTCACATCCTTACCCGCCGACC CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCATCCCAGGCAATTGG CTGCCTATTCCCGCCAGTGGCCCATTTGGCTACGTCCTTCGCATCAACGG TCCAGGCGGGAACGCCAAGCCCATCAGCGGTACCTCCCTCCCTCCCCCCT CCCTCCCTCCCTCCCTCCCTCCTTTCCTCCCTTCTTCATCTTTCCCTTTG TCTTAGACCCCGCCCTCCCTCCTTCTTCCCGAGACTTCCCTTCCCTCCCC TCACTTGTCAAACTCTCCTCCCTCCCTCCCTGCAGAACTCAAGGCCCCTC TGAGGCCTGACGCCGTTTCTCCAGTCGCCATCCGTGCGGCAGCTGGCGGT CCTCCTGTCACCCACGCTGCTGCTTCTGCTGCCGTGGTTCCTCCTACTGC TGCTGCTGCTACTGCTACAGCTGCCACAGGCTCCAAAACTCCTCCCAAAA AGGGTCTGCGGAAGTAAACGAAGAGCGGGAGGAAGGGGGAAGGGAGGGAG GGAGAAGGGGAGGAAAGGAGGACGAGAGACTGATGACAATGATGGGCGTG TATCTATATAAACAAGAAAGTGGGAAAGGCGGGAGGGAAGGAGGGAAAAA AAGAAGGGAGGGCGGGGGGCTAAGCATTCTATCCTCTTTGTGTGGTGAGC ATTGAATGGGATAACGGAGGAAGAGAGGGAGGGAGACAGGGAGGGAGGGA GGG
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Coding sequence (CDS) from alignment at chr2:158532..162734-

>NO02G00470.1 ID=NO02G00470.1|Name=NO02G00470.1|organism=Nannochloropsis oceanica|type=CDS|length=1437bp|location=Sequence derived from alignment at chr2:158532..162734- (Nannochloropsis oceanica)
ATGCGACATTTTTCTCTGGCCCGCCCCGTCACGGGGCTGGTGGCCGCCAT
GGCCTTCCTCTTCCTCCTGGCCGGGACTTCGACCACCGAAGCTGTTTCAG
CCGCTACCGCTAAGAACTTGACCCGCGTGGGCTACATCTACACGTACCCG
ATCATGCTTACGTACCGGGAGATGTACGCGGACATTATCGCCAAGGGGCC
GCCTTACAAGTTTAATCAATTTGTCATCCAAGAAAAGCTGCCCGATCCCA
AGACGGCCGGCCCCAACGCGGACGTGGACTTCCTGACGGCCACCGCTTGG
CTCGACACCCGCGATAACCCCATAGTGCTGACCGTGCCCGAGCCAGACCA
CCCAGACCGCTACATGTCGGTGCAAACCACGCACATGAAGGGCTATGAAA
CTGACTACGTGAGCACGCGCATGAGCGGGATGAAGGATGTCTCGGCCCGG
TATTATATCCAGAGTCCCGCCACCGTCCTTAAGACCGATCCGGGTGGCAT
GTTCAAGAATATTCTCTACTCGGACTCGGACTTCACGCGGGTGCAAGCCC
GGGTGGGACCCATCACCAGCGCCGCCGACGTGACGGCTGCCAAGAATTTG
TTGGCTGAGTTCAAGGTGACGCCACTCCCGGACTTCCTTCGCATGCAGAT
CGGACCCGAGCCCAACTTGAAGTCCAAGCCCTTGACGCCCCCTCCCACGT
TCTACAAGTGGAACGACGACTTGCTCAAGGGCGGGAATAATTTGGAGTGG
ATTAACTTTTTGAACTGGGTCTTGCCCTACGTCAAGATCCACAAAGGAAA
CGAGACTCAATTCATTGAGGACATGGCTGCCGTCGGGGTTAATCCGGGGA
AATACACCGAGCTATCCATGTACCCCCCCGCCACGCTGGAGGCGATGGAG
GAGGGCGTGAAGGAGGGCTATGACTTTATGCACGATCCGGCCAACGCGGC
CCGGTTCGCAGGCACGGACAAGCTCGCGGAAGGGTACTACGATGTGTTTA
ACTATGAGCAACATGCCGTCAGCTCCGTCATCGGAGAGAAGGGAGTCTTC
ACCCCCTCGGCGTGGGAGACGGAGGCCTTCGGGAAGGATTTTCCCGAGGC
CATGCCAGGGGACTCCTACATCCTCAAATTCGACAAGTATAAGATACCCG
GTGTTAACGAGGGCGGCGCTGGCTTTTGGTCCATCACTGCCTACAGTCTG
CCCGACCGCAAGCTCGTGCCCAACGTCCTCGACCGTTACTCGATTCAAAG
CACAAACCCCGACCTGGTTTACAACAAGGACGGCTCCCTCGAGATCTACA
TGCAGGCGAATGCCCCCCCCCAGAGCATCAAGGCAATTGGCTGCCTATTC
CCGCCAGTGGCCCATTTGGCTACGTCCTTCGCATCAACGGTCCAGGCGGG
AACGCCAAGCCCATCAGCGAACTCAAGGCCCCTCTGA
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Synonyms
Publications