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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:158532..162734 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G00470.1 vs.
Match: EWM30618.1 (protein of unknown function DUF1214, partial [Nannochloropsis gaditana]) HSP 1 Score: 195.7 bits (496), Expect = 3.400e-46 Identity = 89/116 (76.72%), Postives = 101/116 (87.07%), Query Frame = 0
Query: 326 AEGYYDVFNYEQHAVSSVIGEKGVFTPSAWETEAFGKDFPEAMPGDSYILKFDKYKIPGVNEGGAGFWSITAYSLPDRKLVPNVLDRYSIQSTNPDLVYNKDGSLEIYMQANAPPQ 442
+ GY+DV NYEQHAV SVIGE GVFTPSAWETEAF KDFP+A+PGDSYILKFDK KIPGVN+ GAGFWS+TAYSLP R LVPN LDRYSIQST+P+L +N DGSLEI++Q + P Q
Sbjct: 6 SSGYFDVLNYEQHAVCSVIGENGVFTPSAWETEAFAKDFPDALPGDSYILKFDKNKIPGVNQEGAGFWSVTAYSLPGRTLVPNALDRYSIQSTDPNLKFNNDGSLEIFLQTDPPGQ 121
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G00470.1 ID=NO02G00470.1|Name=NO02G00470.1|organism=Nannochloropsis oceanica|type=mRNA|length=2537bp CCGAGCTAATACATTGGAAGGGAAGGGCTATTCAGCCAACAATTGTTGCT CGGCATGCGCAGTGCGCGCTGGCATCTGGTCGTAAAAGAAGAGCGCTATA ATGCAAGAGACAAGAGAGCTTGGCCACCGCTTTCACACATCATATATGTC TCGTGGAGGTCGGAACCCGTAAGGAAAAGCACATGCGTAGGCTTGACTTA TTTGCGGGAGGGTCCAAATATTTTTCTCATGGCCGCATCGACAAACAGGA TCTTTCCTACTATTCCCCGCAAGGAGGCGCCTGGCGGCATCACACCAGAT ACTTGTAAGGAGGAAAAAGTGTCATGCCGAGCCTTTGCAAACTTGTGGGT TGAGCATGCAAGGCCTAGCTACCTCGCAGTTGGGTGGGAGAAGGACTTTG CCTAGGTGGCAAGCCTTTCCCTTTGCCAACCCGGGCCCCACGGGGATGTG CTGTACCTTGTACCGTGGGGCGATATATGCAACTCTCATCTTGTTAATGG CCTCACGCATCTCTACAAGCATATTTGGCTGAGTACAAGGACATGTGGAT GCCAAACGCTGTGCCTACCGAGGTCATCGCTCTGGAACATCGTGAAACAA TACGGCGCCAGTCTCCACTCTATCACCACACAATGGTTTATCCCTTCCTC CTCATTCCCCTCCACATCACCAACTTACAGTGCACATCAGAGTGGCAGAG ATGCGACATTTTTCTCTGGCCCGCCCCGTCACGGGGCTGGTGGCCGCCAT GGCCTTCCTCTTCCTCCTGGCCGGGACTTCGACCACCGAAGCTGTTTCAG CCGCTACCGCTAAGAACTTGACCCGCGTGGGCTACATCTACACGTACCCG ATCATGCTTACGTACCGGGAGATGTACGCGGACATTATCGCCAAGGGGCC GCCTTACAAGTTTAATCAATTTGTCATCCAAGAAAAGCTGCCCGATCCCA AGACGGCCGGCCCCAACGCGGACGTGGACTTCCTGACGGCCACCGCTTGG CTCGACACCCGCGATAACCCCATAGTGCTGACCGTGCCCGAGCCAGACCA CCCAGACCGCTACATGTCGGTGCAAACCACGCACATGAAGGGCTATGAAA CTGACTACGTGAGCACGCGCATGAGCGGGATGAAGGATGTCTCGGCCCGG TATTATATCCAGAGTCCCGCCACCGTCCTTAAGACCGATCCGGGTGGCAT GTTCAAGAATATTCTCTACTCGGACTCGGACTTCACGCGGGTGCAAGCCC GGGTGGGACCCATCACCAGCGCCGCCGACGTGACGGCTGCCAAGAATTTG TTGGCTGAGTTCAAGGTGACGCCACTCCCGGACTTCCTTCGCATGCAGAT CGGACCCGAGCCCAACTTGAAGTCCAAGCCCTTGACGCCCCCTCCCACGT TCTACAAGTGGAACGACGACTTGCTCAAGGGCGGGAATAATTTGGAGTGG ATTAACTTTTTGAACTGGGTCTTGCCCTACGTCAAGATCCACAAAGGAAA CGAGACTCAATTCATTGAGGACATGGCTGCCGTCGGGGTTAATCCGGGGA AATACACCGAGCTATCCATGTACCCCCCCGCCACGCTGGAGGCGATGGAG GAGGGCGTGAAGGAGGGCTATGACTTTATGCACGATCCGGCCAACGCGGC CCGGTTCGCAGGCACGGACAAGCTCGCGGAAGGGTACTACGATGTGTTTA ACTATGAGCAACATGCCGTCAGCTCCGTCATCGGAGAGAAGGGAGTCTTC ACCCCCTCGGCGTGGGAGACGGAGGCCTTCGGGAAGGATTTTCCCGAGGC CATGCCAGGGGACTCCTACATCCTCAAATTCGACAAGTATAAGATACCCG GTGTTAACGAGGGCGGCGCTGGCTTTTGGTCCATCACTGCCTACAGTCTG CCCGACCGCAAGCTCGTGCCCAACGTCCTCGACCGTTACTCGATTCAAAG CACAAACCCCGACCTGGTTTACAACAAGGACGGCTCCCTCGAGATCTACA TGCAGGCGAATGCCCCCCCCCAGAGCATCAAGGCAATTGGCTGCCTATTC CCGCCAGTGGCCCATTTGGCTACGTCCTTCGCATCAACGGTCCAGGCGGG AACGCCAAGCCCATCAGCGAACTCAAGGCCCCTCTGAGGCCTGACGCCGT TTCTCCAGTCGCCATCCGTGCGGCAGCTGGCGGTCCTCCTGTCACCCACG CTGCTGCTTCTGCTGCCGTGGTTCCTCCTACTGCTGCTGCTGCTACTGCT ACAGCTGCCACAGGCTCCAAAACTCCTCCCAAAAAGGGTCTGCGGAAGTA AACGAAGAGCGGGAGGAAGGGGGAAGGGAGGGAGGGAGAAGGGGAGGAAA GGAGGACGAGAGACTGATGACAATGATGGGCGTGTATCTATATAAACAAG AAAGTGGGAAAGGCGGGAGGGAAGGAGGGAAAAAAAGAAGGGAGGGCGGG GGGCTAAGCATTCTATCCTCTTTGTGTGGTGAGCATTGAATGGGATAACG GAGGAAGAGAGGGAGGGAGACAGGGAGGGAGGGAGGG back to topprotein sequence of NO02G00470.1 >NO02G00470.1-protein ID=NO02G00470.1-protein|Name=NO02G00470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=479bp MRHFSLARPVTGLVAAMAFLFLLAGTSTTEAVSAATAKNLTRVGYIYTYP IMLTYREMYADIIAKGPPYKFNQFVIQEKLPDPKTAGPNADVDFLTATAW LDTRDNPIVLTVPEPDHPDRYMSVQTTHMKGYETDYVSTRMSGMKDVSAR YYIQSPATVLKTDPGGMFKNILYSDSDFTRVQARVGPITSAADVTAAKNL LAEFKVTPLPDFLRMQIGPEPNLKSKPLTPPPTFYKWNDDLLKGGNNLEW INFLNWVLPYVKIHKGNETQFIEDMAAVGVNPGKYTELSMYPPATLEAME EGVKEGYDFMHDPANAARFAGTDKLAEGYYDVFNYEQHAVSSVIGEKGVF TPSAWETEAFGKDFPEAMPGDSYILKFDKYKIPGVNEGGAGFWSITAYSL PDRKLVPNVLDRYSIQSTNPDLVYNKDGSLEIYMQANAPPQSIKAIGCLF PPVAHLATSFASTVQAGTPSPSANSRPL* back to topmRNA from alignment at chr2:158532..162734- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G00470.1 ID=NO02G00470.1|Name=NO02G00470.1|organism=Nannochloropsis oceanica|type=mRNA|length=4203bp|location=Sequence derived from alignment at chr2:158532..162734- (Nannochloropsis oceanica) CCGAGCTAATACATTGGAAGGGAAGGGCTATTCAGCCAACAATTGTTGCT
CGGCATGCGCAGTGCGCGCTGGCATCTGGTCGTAAAAGAAGAGCGCTATA
ATGCAAGAGACAAGAGAGCTTGGCCACCGCTTTCACACATCATATATGTC
TCGTGGAGGTCGGAACCCGTAAGGAAAAGCACATGCGTAGGCTTGACTTA
TTTGCGGGAGGGTCCAAATATTTTTCTCATGGCCGCATCGACAAACAGGA
TCTTTCCTACTATTCCCCGCAAGGAGGCGCCTGGCGGCATCACACCAGAT
ACTTGTAAGGAGGAAAAAGTGTCATGCCGAGCCTTTGCAAACTTGTGGGT
TGAGCATGCAAGGCCTAGCTACCTCGCAGTTGGGTGGGAGAAGGACTTTG
CCTAGGTGGCAAGCCTTTCCCTTTGCCAACCCGGGCCCCACGGGGATGTG
CTGTACCTTGTACCGTGGGGCGATATATGCAACTCTCATCTTGTTAATGG
CCTCACGCATCTCTACAAGCATATTTGGCTGAGTACAAGGACATGTGGAT
GCCAAACGCTGTGCCTACCGAGGTCATCGCTCTGGAACATCGTGAAACAA
TACGGCGCCAGTCTCCACTCTATCACCACACAATGGTTTATCCCTTCCTC
CTCATTCCCCTCCACATCACCAACTTACAGTGCACATCAGAGTGGCAGAG
ATGCGACATTTTTCTCTGGCCCGCCCCGTCACGGGGCTGGTGGCCGCCAT
GGCCTTCCTCTTCCTCCTGGCCGGGACTTCGACCACCGAAGCTGTTTCAG
CCGCTACCGCTAAGAACTTGACCCGCGTGGGCTACATCTACACGTACCCG
ATCATGCTTACGTACCGGGAGATGTACGCGGACATTATCGCCAAGGGGCC
GCCTTACAAGTTTAATCAATTTGTCATCCAAGAAAAGCTGCCCGATCCCA
AGGTCCGTCCGCCTCACATCTTCCTTCCTTCCTTTATCAACTCGCTCCCC
TTTTCCTTCCAAATCGTTCGGTATTGTTTCTTTTCTCATCTTTTCCTTCC
CATCTCATCGTTGCACACAGACGGCCGGCCCCAACGCGGACGTGGACTTC
CTGACGGCCACCGCTTGGCTCGACACCCGCGATAACCCCATAGTGCTGAC
CGTGCCCGAGCCAGACCACCCAGACCGCTACATGTCGGTGCAAACCACGC
ACATGAAGGGCTATGAAACTGACTACGTGAGCACGCGCATGAGGTAGGAA
GAGAGGGAGGACGCGAGGGTATGGAGGGAAGCACGTTAAAGAGATGACAC
CAGTAGGAGAACCCGCCACGGATTTACATGCATACATCCATTTCCCCCAC
CTACATACAATCGTGACTGCCACTCACCCATTTCCTCATCCTCCGTACAC
CCACACACGGTCACGATGACCCAGCGGGATGAAGGATGTCTCGGCCCGGT
ATTATATCCAGAGTCCCGCCACCGTCCTTAAGACCGATCCGGGTGGCATG
TTCAAGGTACGCAAATTAACTCTCACCCCCTGTCAACGACTCTCCCACTA
TCTCTTCCTCCTCCCCCCACTCCCTAAATCTTACCCTTTCCTACCTCCCT
CCCTTTTTGTGGAAATGCAGAATATTCTCTACTCGGACTCGGACTTCACG
CGGGTGCAAGCCCGGGTGGGACCCATCACCAGCGCCGCCGACGTGACGGC
TGCCAAGAATTTGTTGGCTGAGTTCAAGGTAAATGCGGGAGGGAGGGAGG
TATACGCAGGAGGAAGGGAGAGAGGATGGAAAGGGGGTAAGCACGTTCCG
CCTGGTGCACTCTTTGAACATCTTATCAACGATGAATTGGCTGGTTTTGT
CTTGATACTCGTACATGAGAACCACACGTCCCTCCCTCTCCCCATCCCAC
CCTCCTCTCACTTATTTACTCATGTATGGTCTTTCGGTCTCGGTCCTTTT
TACTCTGATAAAAGATATGTCCATAAACAATTACCACATGACCTTCACCC
CTCCCGTCCGCCCACCCTGCCCCCCTCCCTCCCTCCCTCCCTCCCTAGGT
GACGCCACTCCCGGACTTCCTTCGCATGCAGATCGGACCCGAGCCCAACT
TGAAGTCCAAGCCCTTGACGCCCCCTCCCACGTTCTACAAGTGGAACGAC
GACTTGCTCAAGGGCGGGAATAATTTGGAGTGGATTAACTTTTTGAACTG
GGTCTTGCCCTACGTCAAGATCCACAAAGGGTGAGTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCGTGTATCCGGTGTCTCTTTCTCTTT
CTCTTGCTTCTCCGTATCTTTCCCCTTCAAGCGCTGATCCTTCCTTCCTT
CCTTTGCAACCAACCTCCCTCCCTCCCTTTAGAAACGAGACTCAATTCAT
TGAGGACATGGCTGCCGTCGGGGTTAATCCGGGGAAATACACCGAGCTAT
CCATGTACCCCCCCGCCACGCTGGAGGCGATGGAGGAGGGCGTGAAGGAG
GGCTATGACTTTATGCACGATCCGGCCAACGCGGCCCGGTTCGCAGGCAC
GGACAAGCTCGCGGAAGGTGGGTCTTGAAGGGAGGGAGGGAGGGAGGGAG
GAAGGGAGGGAGGAAGGGAGGGAGGAAGGGAGGGAGGAAGGGAGGGAAGA
AGGTTAACAACTGACAAGGGGCGGGAGACGTCGGTCCGGAAGACCATAAA
TTCCTCACATCTTCCTACCTTCTCTCCCTCCCTCCCTCCCTCCCTTGGTG
CCACTCAGGGTACTACGATGTGTTTAACTATGAGCAACATGCCGTCAGCT
CCGTCATCGGAGAGAAGGGAGTCTTCACCCCCTCGGCGTGGGAGACGGAG
GCCTTCGGGAAGGATTTTCCCGAGGCCATGCCAGGGGACTCCTACATCCT
CAAATTCGACAAGTATAAGATACCCGGTGTTAACGAGGTACGGCGTTTTT
GTGTCTTGGTTCCCTCCGTCCTCCCCTCCTCCCTCCCTCCCACCCTCCCT
TTCAATCTCTATTGTCCTCTTTTTTCCCTTCTTGTCCTCCTTTCCCTCTT
TTTCTCCCTCCCGACTTCAGCCACCGGATCGATCGCTTCTGCCACCTTTC
TTAACCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCCCAGGGCG
GCGCTGGCTTTTGGTCCATCACTGCCTACAGTCTGCCCGACCGCAAGCTC
GTGCCCAACGTCCTCGACCGTTACTCGATTCAAAGCACAAACCCCGACCT
GGTTTACAACAAGGACGGCTCCCTCGAGATCTACATGCAGGCGAATGCCC
CCCCCCAGAGCATCAAGGTAGGGAGGGAGGGAGGAAAGAAGGAGGAAAGG
AAGAGGAAAGGAGGAAAGGAGGGATGAAAGAAGGAGGGAAGGAGGGAAGG
AGGGAGGGAGGAAGAGAGGGAAGGAAGAGGAGATGATGACCCATGCCACC
GAAGAGGAGATGATGACCCATGCCACCACTCACATCCTTACCCGCCGACC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCATCCCAGGCAATTGG
CTGCCTATTCCCGCCAGTGGCCCATTTGGCTACGTCCTTCGCATCAACGG
TCCAGGCGGGAACGCCAAGCCCATCAGCGGTACCTCCCTCCCTCCCCCCT
CCCTCCCTCCCTCCCTCCCTCCTTTCCTCCCTTCTTCATCTTTCCCTTTG
TCTTAGACCCCGCCCTCCCTCCTTCTTCCCGAGACTTCCCTTCCCTCCCC
TCACTTGTCAAACTCTCCTCCCTCCCTCCCTGCAGAACTCAAGGCCCCTC
TGAGGCCTGACGCCGTTTCTCCAGTCGCCATCCGTGCGGCAGCTGGCGGT
CCTCCTGTCACCCACGCTGCTGCTTCTGCTGCCGTGGTTCCTCCTACTGC
TGCTGCTGCTACTGCTACAGCTGCCACAGGCTCCAAAACTCCTCCCAAAA
AGGGTCTGCGGAAGTAAACGAAGAGCGGGAGGAAGGGGGAAGGGAGGGAG
GGAGAAGGGGAGGAAAGGAGGACGAGAGACTGATGACAATGATGGGCGTG
TATCTATATAAACAAGAAAGTGGGAAAGGCGGGAGGGAAGGAGGGAAAAA
AAGAAGGGAGGGCGGGGGGCTAAGCATTCTATCCTCTTTGTGTGGTGAGC
ATTGAATGGGATAACGGAGGAAGAGAGGGAGGGAGACAGGGAGGGAGGGA
GGG back to topCoding sequence (CDS) from alignment at chr2:158532..162734- >NO02G00470.1 ID=NO02G00470.1|Name=NO02G00470.1|organism=Nannochloropsis oceanica|type=CDS|length=1437bp|location=Sequence derived from alignment at chr2:158532..162734- (Nannochloropsis oceanica) ATGCGACATTTTTCTCTGGCCCGCCCCGTCACGGGGCTGGTGGCCGCCAT GGCCTTCCTCTTCCTCCTGGCCGGGACTTCGACCACCGAAGCTGTTTCAG CCGCTACCGCTAAGAACTTGACCCGCGTGGGCTACATCTACACGTACCCG ATCATGCTTACGTACCGGGAGATGTACGCGGACATTATCGCCAAGGGGCC GCCTTACAAGTTTAATCAATTTGTCATCCAAGAAAAGCTGCCCGATCCCA AGACGGCCGGCCCCAACGCGGACGTGGACTTCCTGACGGCCACCGCTTGG CTCGACACCCGCGATAACCCCATAGTGCTGACCGTGCCCGAGCCAGACCA CCCAGACCGCTACATGTCGGTGCAAACCACGCACATGAAGGGCTATGAAA CTGACTACGTGAGCACGCGCATGAGCGGGATGAAGGATGTCTCGGCCCGG TATTATATCCAGAGTCCCGCCACCGTCCTTAAGACCGATCCGGGTGGCAT GTTCAAGAATATTCTCTACTCGGACTCGGACTTCACGCGGGTGCAAGCCC GGGTGGGACCCATCACCAGCGCCGCCGACGTGACGGCTGCCAAGAATTTG TTGGCTGAGTTCAAGGTGACGCCACTCCCGGACTTCCTTCGCATGCAGAT CGGACCCGAGCCCAACTTGAAGTCCAAGCCCTTGACGCCCCCTCCCACGT TCTACAAGTGGAACGACGACTTGCTCAAGGGCGGGAATAATTTGGAGTGG ATTAACTTTTTGAACTGGGTCTTGCCCTACGTCAAGATCCACAAAGGAAA CGAGACTCAATTCATTGAGGACATGGCTGCCGTCGGGGTTAATCCGGGGA AATACACCGAGCTATCCATGTACCCCCCCGCCACGCTGGAGGCGATGGAG GAGGGCGTGAAGGAGGGCTATGACTTTATGCACGATCCGGCCAACGCGGC CCGGTTCGCAGGCACGGACAAGCTCGCGGAAGGGTACTACGATGTGTTTA ACTATGAGCAACATGCCGTCAGCTCCGTCATCGGAGAGAAGGGAGTCTTC ACCCCCTCGGCGTGGGAGACGGAGGCCTTCGGGAAGGATTTTCCCGAGGC CATGCCAGGGGACTCCTACATCCTCAAATTCGACAAGTATAAGATACCCG GTGTTAACGAGGGCGGCGCTGGCTTTTGGTCCATCACTGCCTACAGTCTG CCCGACCGCAAGCTCGTGCCCAACGTCCTCGACCGTTACTCGATTCAAAG CACAAACCCCGACCTGGTTTACAACAAGGACGGCTCCCTCGAGATCTACA TGCAGGCGAATGCCCCCCCCCAGAGCATCAAGGCAATTGGCTGCCTATTC CCGCCAGTGGCCCATTTGGCTACGTCCTTCGCATCAACGGTCCAGGCGGG AACGCCAAGCCCATCAGCGAACTCAAGGCCCCTCTGA back to top
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