NO02G00450.1, NO02G00450.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G00450.1
Unique NameNO02G00450.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1254
Alignment locationchr2:154732..155985 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:154732..155985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G00450.1 vs.
Match: CBJ30838.1 (General transcription factor II H, polypeptide 2 [Ectocarpus siliculosus])

HSP 1 Score: 366.3 bits (939), Expect = 1.300e-97
Identity = 190/418 (45.45%), Postives = 267/418 (63.88%), Query Frame = 0
Query:   30 YSWEGALDMSWVNVKMDEEGRLIS--EGQDQDEHLRRRQHEANRRKLALGQCVRRGLIRYLFLGLDASASMREIDLKPERLRMALKLCQEFVKEYFDQNPISQLGLMVTKQGEAERLTDLSANPKSHIAKLQDYALRHRAEGEASLQNLLELALSSLRAIPDYGNREVVLMYGSLTTCDPGDIFETLKKLVKARVRVSIISLSAEMYICRKVCEDTNGTYSIALDGKHLADLLMAQVAPPPTTTTAASKGPLYMDMVLMGFPNRVHTPNAPTLAFDGANPPKPTTVAYVCPRCQARVADLPTACNICTLPLVSSSHLARSYHHLFPVTQYTEVP---------------------------PTEQKELDT--CHACLRHFDVASLKVVRLQCPTCQRVFCLDCDMYIHESLHNCPGCC 417
            Y+WE   + +W  V+ DE G + +  EGQ ++  +RRR           G+ ++RG+IRYL+L +D S +M + D++P RL + L++ Q+FV  YFDQNP+SQLG++VT++G AE++T+LS NPK+H+  L   +     +GEASLQNLLE+A +SLRA+P+YGNREVV++Y SL+TCDPGDI ET+ KL   +VR S++ L AEM++ R++ E+T+G YSIA D  H  + LMAQ  PPP  T    +G ++ D+V MGFP        P+L + G N  + +   Y CPRC+ + ++LP+ C IC LPLVSS HLARSYHHLFPV Q+ E+P                            TE++   +  C  CLR  D++ L   R +CP C+  FCLDCDMY+H+SLHNCPGCC
Sbjct:   15 YAWEKGFERTWEGVEEDEHGNIKTREEGQRRNRRVRRRVG---------GESIKRGMIRYLYLAIDLSKTMADGDMRPSRLAVTLRIVQDFVTNYFDQNPLSQLGILVTREGRAEKITELSGNPKAHMEALTKDS---DTKGEASLQNLLEMACTSLRAVPEYGNREVVVIYSSLSTCDPGDIHETIAKLKTHKVRASVVGLGAEMFVLRRLTEETSGDYSIAGDENHYRESLMAQCTPPP--TPPGREGAMFADLVRMGFPAETQDV-FPSLGYSG-NRQELSVSGYSCPRCKTKTSELPSECVICALPLVSSPHLARSYHHLFPVPQFDEIPAAAPAAAAAAASAGSAGGMGSGAGAGRATEEESASSSYCAGCLR--DLSGLP--RYRCPECRSAFCLDCDMYVHDSLHNCPGCC 412          
The following BLAST results are available for this feature:
BLAST of NO02G00450.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ30838.11.300e-9745.45General transcription factor II H, polypeptide 2 [... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G00450NO02G00450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G00450.1NO02G00450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G00450.1.cds1NO02G00450.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G00450.1 ID=NO02G00450.1|Name=NO02G00450.1|organism=Nannochloropsis oceanica|type=mRNA|length=1254bp
ATGTCATCCGATGCATTGAGTGGACTGCGCCTTGGTGGTGGTACGGTGGA
GGATGGGGAGGAGGATGGTGGCGAGACAGAGCGCATGTATTCCTGGGAGG
GGGCTTTAGACATGTCCTGGGTAAACGTAAAGATGGACGAAGAGGGCCGA
CTCATCTCCGAGGGACAAGACCAAGACGAGCACCTACGACGGCGACAGCA
CGAGGCTAACAGAAGAAAGCTGGCCTTGGGCCAATGTGTAAGAAGGGGAC
TGATCCGCTACCTCTTCCTTGGGCTCGACGCCAGTGCCTCCATGAGGGAA
ATCGACTTAAAACCCGAACGCCTTCGCATGGCCCTCAAACTCTGTCAAGA
GTTCGTTAAGGAGTACTTCGACCAAAACCCTATCTCACAGCTCGGTCTGA
TGGTGACCAAGCAAGGCGAAGCAGAACGCTTGACAGACCTGAGCGCGAAC
CCCAAATCCCACATTGCAAAGCTTCAAGACTACGCCCTCCGGCATCGTGC
CGAGGGGGAGGCCTCCCTTCAGAATCTCCTCGAGCTTGCCTTGTCGTCCC
TAAGAGCCATTCCTGACTACGGCAATCGAGAAGTCGTGCTGATGTACGGA
AGCCTGACCACCTGCGACCCCGGAGACATATTCGAAACATTGAAAAAACT
CGTCAAAGCCAGGGTGCGCGTCTCCATCATCAGCCTCTCCGCCGAGATGT
ACATCTGTCGTAAGGTCTGCGAGGACACCAACGGCACCTATTCCATCGCC
TTAGATGGAAAACACCTCGCAGACCTGCTCATGGCTCAAGTCGCCCCTCC
TCCCACCACCACCACCGCTGCCTCCAAAGGCCCCCTGTACATGGACATGG
TGCTCATGGGTTTCCCCAACCGCGTGCATACTCCAAACGCCCCCACCCTT
GCCTTTGACGGCGCAAACCCCCCTAAACCTACGACAGTCGCCTATGTCTG
CCCTCGGTGCCAAGCACGGGTGGCGGACCTGCCCACAGCCTGCAACATTT
GCACGTTACCACTGGTCTCGTCCTCTCATCTCGCCCGCTCCTACCACCAC
CTATTTCCCGTCACTCAATACACGGAGGTGCCACCAACCGAGCAAAAGGA
GCTGGATACGTGTCATGCCTGCCTGCGGCACTTTGATGTGGCCTCGCTGA
AGGTGGTGCGGTTGCAGTGCCCCACTTGCCAGCGCGTTTTTTGTTTGGAC
TGTGACATGTACATTCATGAGAGTTTGCACAACTGCCCAGGGTGCTGTGG
ATGA
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protein sequence of NO02G00450.1

>NO02G00450.1-protein ID=NO02G00450.1-protein|Name=NO02G00450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=418bp
MSSDALSGLRLGGGTVEDGEEDGGETERMYSWEGALDMSWVNVKMDEEGR
LISEGQDQDEHLRRRQHEANRRKLALGQCVRRGLIRYLFLGLDASASMRE
IDLKPERLRMALKLCQEFVKEYFDQNPISQLGLMVTKQGEAERLTDLSAN
PKSHIAKLQDYALRHRAEGEASLQNLLELALSSLRAIPDYGNREVVLMYG
SLTTCDPGDIFETLKKLVKARVRVSIISLSAEMYICRKVCEDTNGTYSIA
LDGKHLADLLMAQVAPPPTTTTAASKGPLYMDMVLMGFPNRVHTPNAPTL
AFDGANPPKPTTVAYVCPRCQARVADLPTACNICTLPLVSSSHLARSYHH
LFPVTQYTEVPPTEQKELDTCHACLRHFDVASLKVVRLQCPTCQRVFCLD
CDMYIHESLHNCPGCCG*
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mRNA from alignment at chr2:154732..155985+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G00450.1 ID=NO02G00450.1|Name=NO02G00450.1|organism=Nannochloropsis oceanica|type=mRNA|length=1254bp|location=Sequence derived from alignment at chr2:154732..155985+ (Nannochloropsis oceanica)
ATGTCATCCGATGCATTGAGTGGACTGCGCCTTGGTGGTGGTACGGTGGA GGATGGGGAGGAGGATGGTGGCGAGACAGAGCGCATGTATTCCTGGGAGG GGGCTTTAGACATGTCCTGGGTAAACGTAAAGATGGACGAAGAGGGCCGA CTCATCTCCGAGGGACAAGACCAAGACGAGCACCTACGACGGCGACAGCA CGAGGCTAACAGAAGAAAGCTGGCCTTGGGCCAATGTGTAAGAAGGGGAC TGATCCGCTACCTCTTCCTTGGGCTCGACGCCAGTGCCTCCATGAGGGAA ATCGACTTAAAACCCGAACGCCTTCGCATGGCCCTCAAACTCTGTCAAGA GTTCGTTAAGGAGTACTTCGACCAAAACCCTATCTCACAGCTCGGTCTGA TGGTGACCAAGCAAGGCGAAGCAGAACGCTTGACAGACCTGAGCGCGAAC CCCAAATCCCACATTGCAAAGCTTCAAGACTACGCCCTCCGGCATCGTGC CGAGGGGGAGGCCTCCCTTCAGAATCTCCTCGAGCTTGCCTTGTCGTCCC TAAGAGCCATTCCTGACTACGGCAATCGAGAAGTCGTGCTGATGTACGGA AGCCTGACCACCTGCGACCCCGGAGACATATTCGAAACATTGAAAAAACT CGTCAAAGCCAGGGTGCGCGTCTCCATCATCAGCCTCTCCGCCGAGATGT ACATCTGTCGTAAGGTCTGCGAGGACACCAACGGCACCTATTCCATCGCC TTAGATGGAAAACACCTCGCAGACCTGCTCATGGCTCAAGTCGCCCCTCC TCCCACCACCACCACCGCTGCCTCCAAAGGCCCCCTGTACATGGACATGG TGCTCATGGGTTTCCCCAACCGCGTGCATACTCCAAACGCCCCCACCCTT GCCTTTGACGGCGCAAACCCCCCTAAACCTACGACAGTCGCCTATGTCTG CCCTCGGTGCCAAGCACGGGTGGCGGACCTGCCCACAGCCTGCAACATTT GCACGTTACCACTGGTCTCGTCCTCTCATCTCGCCCGCTCCTACCACCAC CTATTTCCCGTCACTCAATACACGGAGGTGCCACCAACCGAGCAAAAGGA GCTGGATACGTGTCATGCCTGCCTGCGGCACTTTGATGTGGCCTCGCTGA AGGTGGTGCGGTTGCAGTGCCCCACTTGCCAGCGCGTTTTTTGTTTGGAC TGTGACATGTACATTCATGAGAGTTTGCACAACTGCCCAGGGTGCTGTGG ATGA
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Coding sequence (CDS) from alignment at chr2:154732..155985+

>NO02G00450.1 ID=NO02G00450.1|Name=NO02G00450.1|organism=Nannochloropsis oceanica|type=CDS|length=1254bp|location=Sequence derived from alignment at chr2:154732..155985+ (Nannochloropsis oceanica)
ATGTCATCCGATGCATTGAGTGGACTGCGCCTTGGTGGTGGTACGGTGGA
GGATGGGGAGGAGGATGGTGGCGAGACAGAGCGCATGTATTCCTGGGAGG
GGGCTTTAGACATGTCCTGGGTAAACGTAAAGATGGACGAAGAGGGCCGA
CTCATCTCCGAGGGACAAGACCAAGACGAGCACCTACGACGGCGACAGCA
CGAGGCTAACAGAAGAAAGCTGGCCTTGGGCCAATGTGTAAGAAGGGGAC
TGATCCGCTACCTCTTCCTTGGGCTCGACGCCAGTGCCTCCATGAGGGAA
ATCGACTTAAAACCCGAACGCCTTCGCATGGCCCTCAAACTCTGTCAAGA
GTTCGTTAAGGAGTACTTCGACCAAAACCCTATCTCACAGCTCGGTCTGA
TGGTGACCAAGCAAGGCGAAGCAGAACGCTTGACAGACCTGAGCGCGAAC
CCCAAATCCCACATTGCAAAGCTTCAAGACTACGCCCTCCGGCATCGTGC
CGAGGGGGAGGCCTCCCTTCAGAATCTCCTCGAGCTTGCCTTGTCGTCCC
TAAGAGCCATTCCTGACTACGGCAATCGAGAAGTCGTGCTGATGTACGGA
AGCCTGACCACCTGCGACCCCGGAGACATATTCGAAACATTGAAAAAACT
CGTCAAAGCCAGGGTGCGCGTCTCCATCATCAGCCTCTCCGCCGAGATGT
ACATCTGTCGTAAGGTCTGCGAGGACACCAACGGCACCTATTCCATCGCC
TTAGATGGAAAACACCTCGCAGACCTGCTCATGGCTCAAGTCGCCCCTCC
TCCCACCACCACCACCGCTGCCTCCAAAGGCCCCCTGTACATGGACATGG
TGCTCATGGGTTTCCCCAACCGCGTGCATACTCCAAACGCCCCCACCCTT
GCCTTTGACGGCGCAAACCCCCCTAAACCTACGACAGTCGCCTATGTCTG
CCCTCGGTGCCAAGCACGGGTGGCGGACCTGCCCACAGCCTGCAACATTT
GCACGTTACCACTGGTCTCGTCCTCTCATCTCGCCCGCTCCTACCACCAC
CTATTTCCCGTCACTCAATACACGGAGGTGCCACCAACCGAGCAAAAGGA
GCTGGATACGTGTCATGCCTGCCTGCGGCACTTTGATGTGGCCTCGCTGA
AGGTGGTGCGGTTGCAGTGCCCCACTTGCCAGCGCGTTTTTTGTTTGGAC
TGTGACATGTACATTCATGAGAGTTTGCACAACTGCCCAGGGTGCTGTGG
ATGA
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Synonyms
Publications