NO02G00290.1, NO02G00290.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G00290.1
Unique NameNO02G00290.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2372
Alignment locationchr2:103535..107279 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:103535..107279 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G00290.1 vs.
Match: EWM30635.1 (alternative oxidase [Nannochloropsis gaditana])

HSP 1 Score: 564.3 bits (1453), Expect = 2.800e-157
Identity = 280/370 (75.68%), Postives = 314/370 (84.86%), Query Frame = 0
Query:    1 MLARALLPKRGGVVAVAFLRASAST-MPTMHTRTVVSQRAFMAAHSHYPTIFNRALSTTMKPEEDTAPIADATNPRKAAVEESLRDGARSIVHFKLSPNRHALNVPKLDPKEKIWENPTHHSVWTKEEVESVQITHLPPADWTSRVAYGLAQTLRFSFDLLAGFKHRKATEDMFLNRVVFLETVAGIPGMAAGMIRHLHSLRRMKRDHGWIHTLLEEAENERMHLLTFMRLKQPGPFFRFSVLVVQGVFFNVFFLSYLINPKICHRLVGHIEEEAVKTYTHIIDMMDAGELPLFNHIIPPPIAVSYWKLAPDATFRDLLLAIRKDEATHREVNHTFASMDENDDNPFLAEEQYRAQVEMHNSTAMTSEKE 370
            MLARA+LP R G +A AFL+ S++T MP    + +   R          T+F RA+STT+KPEE       A        +E LRDGARSI+HFKLSPNRHALNVPKLDPKEK+WENPTHHSVWTKEEVE+V++THLPPADWTSRVAY +AQTLRFSFD+LAGFK RKATEDM+LNR+VFLETVAGIPGMAAGMIRHLHSLRRM+RDHGWIHTLLEEAENERMHLLTFMRLK+PGP FR +VLVVQGVFFNVFFLSYLINPKICHRLVGHIEEEAV+TYTHII+ MDAG+LPLFNH+IPPPIAVSYWKLAPDATFRDLLLAIRKDEATHREVNHTFA++ ENDDNPFLAEE+YRA++         +EK+
Sbjct:    1 MLARAVLPTRSGSLAAAFLKTSSATIMPPKQLQGL--SRTLQVKSYRQSTVFYRAMSTTLKPEERAGTFTPAAPSTTTQEKEELRDGARSIIHFKLSPNRHALNVPKLDPKEKVWENPTHHSVWTKEEVENVEVTHLPPADWTSRVAYTIAQTLRFSFDVLAGFKFRKATEDMYLNRMVFLETVAGIPGMAAGMIRHLHSLRRMQRDHGWIHTLLEEAENERMHLLTFMRLKRPGPLFRAAVLVVQGVFFNVFFLSYLINPKICHRLVGHIEEEAVRTYTHIIEEMDAGQLPLFNHVIPPPIAVSYWKLAPDATFRDLLLAIRKDEATHREVNHTFANLKENDDNPFLAEEEYRAKITTMGQPTPVAEKK 368          
The following BLAST results are available for this feature:
BLAST of NO02G00290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30635.12.800e-15775.68alternative oxidase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G00290NO02G00290Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G00290.1NO02G00290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G00290.1.cds1NO02G00290.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00290.1.cds2NO02G00290.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00290.1.cds3NO02G00290.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00290.1.cds4NO02G00290.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00290.1.cds5NO02G00290.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00290.1.cds6NO02G00290.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00290.1.cds7NO02G00290.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G00290.1 ID=NO02G00290.1|Name=NO02G00290.1|organism=Nannochloropsis oceanica|type=mRNA|length=2372bp
ATAGTTTAGTTCTTTTTTGTTCTCCTACAATCCTAGAACTATCGCATGCA
ACCTGACGTCCTCTAGAACTTGCATACGAGGGGAAGCCTTCCAAAACAAA
ATGTTGCATATTCTTCCCCTTATTTTTATCCGAGTCGGTAAGCGGCCTTC
ACAGATTTTCAGTCGTTGGGGGTAGTACAATTGGGATTTGGGGCAGAGTT
AGGTAGACAATGTAGCTTTGCTCATGAGTCAGGTTGGAACATACCGATCT
TTTCATTGTGTCGAGTACGAGCTTATACATGTCAGAGCTGCACACCCCCC
GAGATGGCTCTATCCATGGGGGTATGACAGTGTCGGCATGTTACGGAAGT
GCCATAAAAACCCCTCCCATGGGGTATTTTCTATCTTTGTAAGGCAGCAG
CAAGTCAAGTCAAGTCAAGTCAAAAATCGGATTCTGATCGGTCGGCAGAG
TCATGGCCGATCAGATCAACACACATGGAGCACCTGCCACGTCCCCTTCC
CTTCCCTAGATGGAAAATGGCTTTTCACGCAGAGCAATAAACATTTTGCC
CTCGCCAACTGGTCTTGACTGTGTCCCCAGCATTGCTTCGAGTCCCACTG
GCATGGGACATAAAACGCCGCTTCCCCCGCGATCCCACCAGATGTATTCT
TCGCCCGTTGGGGATCCTTGCGCCTCCTGTCGCGATGCAGTTCACGAACG
ACATACATTCATTCCACGTATATCACGTCTTCCTCCATTTTTCCCATCCC
TAAACCTTTTCCATCCCACACAGCCTTTATTTAATCACCCACCCGACCAC
AGCAGCACACCAGCTGTCCAGCCATGCTTGCCCGTGCTTTGCTGCCCAAA
CGCGGCGGTGTCGTCGCGGTCGCGTTCCTGCGAGCCTCCGCTTCCACCAT
GCCGACGATGCACACCCGCACCGTGGTCTCGCAGCGCGCCTTCATGGCTG
CGCATTCTCACTACCCTACGATTTTCAACCGGGCCCTAAGCACGACAATG
AAGCCGGAGGAGGACACCGCCCCGATTGCCGACGCCACCAACCCCAGGAA
GGCTGCCGTGGAGGAGAGCTTGCGTGACGGGGCCCGCTCCATCGTGCACT
TCAAGCTGAGCCCCAACCGCCATGCCCTTAACGTGCCCAAACTCGACCCG
AAAGAGAAGATCTGGGAAAACCCTACCCACCACAGCGTCTGGACCAAGGA
AGAGGTCGAGAGCGTTCAGATCACGCATCTCCCACCAGCGGATTGGACCT
CCCGGGTCGCTTATGGCCTAGCGCAAACCCTCCGGTTCAGTTTCGACCTG
TTGGCGGGCTTCAAACACCGCAAGGCCACTGAGGATATGTTCCTGAACCG
TGTCGTATTCCTCGAGACCGTGGCGGGCATTCCCGGCATGGCAGCCGGCA
TGATTCGTCACCTACACAGCCTCCGCCGGATGAAGCGGGACCACGGGTGG
ATCCACACCTTGTTGGAGGAGGCAGAGAACGAGCGTATGCACTTGTTGAC
CTTCATGAGGTTGAAGCAGCCGGGTCCCTTTTTTCGCTTCTCGGTGTTGG
TGGTACAAGGAGTGTTCTTCAACGTCTTTTTCCTCTCGTACCTGATCAAT
CCCAAGATTTGCCATCGCCTCGTTGGTCACATCGAGGAGGAGGCCGTTAA
GACGTACACGCACATCATCGACATGATGGATGCCGGAGAGCTGCCCTTGT
TCAACCACATCATCCCTCCGCCCATCGCCGTGTCGTACTGGAAGCTAGCT
CCTGATGCCACCTTCCGCGACCTGCTTCTGGCGATCCGCAAGGATGAGGC
CACGCACCGTGAAGTTAACCACACCTTTGCAAGCATGGACGAGAACGATG
ACAACCCCTTCCTTGCAGAGGAGCAGTACCGCGCGCAAGTGGAGATGCAT
AACTCCACGGCCATGACGTCGGAGAAGGAGAAAAATAAGATGGCGTAAGC
AAAGCAGTGAGTGAGGTTGAAGGGACCATCATTCGGGTTTTGGTTTGGCC
CACAAACTCGGAAGATAGACTGGCAGGACCTTGCGAGTTTTGATAAGGAC
GAGACAATGCATAATTGAGAGGCTGTTTGTATTGTATTACTACAAGAGAT
GAATACGTGGTATATCTCACATATATGCTGGGCACGAAGGCACGCGCACG
ACAGAGAGCATTTTTATCGTGACAGCGAGAGTATTTGTACTGTGACCATA
TAAATGAGTGTGGTGGTCTTGGTGGAGGGAGAGAGAATGGGGATAAAATA
GTGAGAAAAATTGTGGCTGGATACGAGGATCATACTACTGTCACAAAGTG
GAATTCTTGAACAGGATTTATTTAAGTGTGTGATGAAACTTTTTGCATTA
AAAGTAGGTGATGAAATATTTT
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protein sequence of NO02G00290.1

>NO02G00290.1-protein ID=NO02G00290.1-protein|Name=NO02G00290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=375bp
MLARALLPKRGGVVAVAFLRASASTMPTMHTRTVVSQRAFMAAHSHYPTI
FNRALSTTMKPEEDTAPIADATNPRKAAVEESLRDGARSIVHFKLSPNRH
ALNVPKLDPKEKIWENPTHHSVWTKEEVESVQITHLPPADWTSRVAYGLA
QTLRFSFDLLAGFKHRKATEDMFLNRVVFLETVAGIPGMAAGMIRHLHSL
RRMKRDHGWIHTLLEEAENERMHLLTFMRLKQPGPFFRFSVLVVQGVFFN
VFFLSYLINPKICHRLVGHIEEEAVKTYTHIIDMMDAGELPLFNHIIPPP
IAVSYWKLAPDATFRDLLLAIRKDEATHREVNHTFASMDENDDNPFLAEE
QYRAQVEMHNSTAMTSEKEKNKMA*
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mRNA from alignment at chr2:103535..107279-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G00290.1 ID=NO02G00290.1|Name=NO02G00290.1|organism=Nannochloropsis oceanica|type=mRNA|length=3745bp|location=Sequence derived from alignment at chr2:103535..107279- (Nannochloropsis oceanica)
ATAGTTTAGTTCTTTTTTGTTCTCCTACAATCCTAGAACTATCGCATGCA ACCTGACGTCCTCTAGAACTTGCATACGAGGGGAAGCCTTCCAAAACAAA ATGTTGCATATTCTTCCCCTTATTTTTATCCGAGTCGGTAAGCGGCCTTC ACAGATTTTCAGTCGTTGGGGGTAGTACAATTGGGATTTGGGGCAGAGTT AGGTAGACAATGTAGCTTTGCTCATGAGTCAGGTTGGAACATACCGATCT TTTCATTGTGTCGAGTACGAGCTTATACATGTCAGAGCTGCACACCCCCC GAGATGGCTCTATCCATGGGGGTATGACAGTGTCGGCATGTTACGGAAGT GCCATAAAAACCCCTCCCATGGGGTATTTTCTATCTTTGTAAGGCAGCAG CAAGTCAAGTCAAGTCAAGTCAAAAATCGGATTCTGATCGGTCGGCAGAG TCATGGCCGATCAGATCAACACACATGGAGCACCTGCCACGTCCCCTTCC CTTCCCTAGATGGAAAATGGCTTTTCACGCAGAGCAATAAACATTTTGCC CTCGCCAACTGGTCTTGACTGTGTCCCCAGCATTGCTTCGAGTCCCACTG GCATGGGACATAAAACGCCGCTTCCCCCGCGATCCCACCAGATGTATTCT TCGCCCGTTGGGGATCCTTGCGCCTCCTGTCGCGATGCAGTTCACGAACG ACATACATTCATTCCACGTATATCACGTCTTCCTCCATTTTTCCCATCCC TAAACCTTTTCCATCCCACACAGCCTTTATTTAATCACCCACCCGACCAC AGCAGCACACCAGCTGTCCAGCCATGCTTGCCCGTGCTTTGCTGCCCAAA CGCGGCGGTGTCGTCGCGGTCGCGTTCCTGCGAGCCTCCGCTTCCACCAT GCCGACGATGCACACCCGCACCGTGGTCTCGCAGCGCGCCTTCATGGCTG CGCATTCTCACTACCCTACGATTTTCAACCGGGCCCTAAGCACGACAATG AAGCCGGAGGAGGACACCGGTAAGTATGTGTGTTTGCCTGGAGGAAATAC GGCCGCTCAGCAAGCAGCCCTGTCATAAGCCTCGAGGCTAGGGTATGTAG GAGTGGGTTCGCGAGTAGATGGGACGACTGCCTTGCTGTTTGTGACCGAT CTACTCGCCCTTACACATATGCATTTTCCTTTCCACACAAACGCACCCCC TACCCATCCCCACGCACAGCCCCGATTGCCGACGCCACCAACCCCAGGAA GGCTGCCGTGGAGGAGAGCTTGCGTGACGGGGCCCGCTCCATCGTGCACT TCAAGCTGAGCCCCAACCGCCATGCCCTTAACGTGCCCAAACTCGACCCG AAAGAGAAGATCTGGGAAAACCCTACCCACCACAGCGTCTGGACCAAGGA AGAGGTCGAGAGCGTTCAGATCACGCATCTCCCACCAGCGGATGTGAGTA GCAAAGCATATGGGTGACGTGTCGATAGCGTGTGTGTGCATGAGCGGTGT TAGGAAGTCCTCACATCGCCGTCTCCCCTCTACTTTGCCTCATCACCACC TGAGGGCGTGTGCCTCCCTTCTTCCCTTACTCGCTCGTGACAAGCTTACG TTTCTTTACACATCCTCCTTCGATGTGTGGCCTCTCCCTGGCCTGCAAGC TCATCCCTCCCCCCTCCCGCCTTCCCTCCCACCACATCAAACCCCAACAG TGGACCTCCCGGGTCGCTTATGGCCTAGCGCAAACCCTCCGGTTCAGTTT CGACCTGTTGGCGGGCTTCAAACACCGCAAGGCCACTGAGGATATGTTCC TGAACCGTGTCGTATTCCTCGAGACCGTGGCGGGTACGTAGAGGATGGGG GATGGAGCGTGTATCGAGAAATGGAGGGAGGGAAAAAAGAATATTGGACG TCAGACGTGTCGTGTAAGCGTTTCCGTACTACCGTCGGAGGGTAAATATC GTGTATAAACTAGCCTCTCCTCCCTCTTATCCTGTCACCGTATCCACTCG CTCTCCCTCCTCCTCTTCCTCCTCCTTCTCCTCCTCCCTCCGACCTCCTC CTCCTCCACCACCACCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT CCTCCTCCTCCGCCTTTTTTTGTTTTCCTTGCAGGCATTCCCGGCATGGC AGCCGGCATGATTCGTCACCTACACAGCCTCCGCCGGATGAAGCGGGACC ACGGGTGGATCCACACCTTGTTGGAGGAGGCAGAGAACGAGCGTATGCAC TTGTTGACCTTCATGAGGTTGAAGCAGCCGGGTCCCTTTTTTCGCTTCTC GGTGTTGGTGGTACAAGGAGTGTTCTTCAACGGTGCGTTTCGGCAGGGGG GGAGAGGGGGGACTTTAAACTCAGCATCATTCCTCTTGCTTAACCATCCC TTTCATTCACATTTGTACCCACCACCACCCACATAGTCTTTTTCCTCTCG TACCTGATCAATCCCAAGATTTGCCATCGCCTCGTTGGTCACATCGAGGA GGAGGCCGTTAAGACGGTAAGTCGCTCGAGCTTCAAGGGAGGGACGGGGG GTTGTAGGGCGGAACGGCGTGGTACAAGAAACACCAGCTGCTGTATTATT GTCTATTGCAGGCAGAGGCGAGTATGCACCTTGTTCCGTACGCTGTAGGA CATTGGAGGAGCGGATCGGATCGCAGTGACGGTAGCATGAGGTAGCGTGG TGCTCACTCGCATTTTGGAGTTCATGTCTTTTATTCTAATCCCCATCCCA ACCTATGTACTCCCCCACATAGTACACGCACATCATCGACATGATGGATG CCGGAGAGCTGCCCTTGTTCAACCACATCATCCCTCCGCCCATCGCCGTG TCGTACTGGAAGCTAGGTATGTTGACGGGCAATGGGAGCAGTGCACCCAC ATAGAAGGAAGTTCGCGAACGACTGCACATACACACACATACATACGCAT ACATACACACGTGCACACACGTACGAACTAGGGGGTGCGCATCACGTGCA TTAATATATTAGCACGCATACACACGCTTGTGCACATAAAGATAATGTAA TAATATATCACGCTCATTCCCTCGTATCGTTACGCTCATTTTCCTGTCAA TACAAACACGCAAACACACAGCTCCTGATGCCACCTTCCGCGACCTGCTT CTGGCGATCCGCAAGGATGAGGCCACGCACCGTGAAGTTAACCACACCTT TGCAAGCATGGACGAGAACGATGACAACCCCTTCCTTGCAGAGGAGCAGT ACCGCGCGCAAGTGGAGATGCATAACTCCACGGCCATGACGTCGGAGAAG GAGAAAAATAAGATGGCGTAAGCAAAGCAGTGAGTGAGGTTGAAGGGACC ATCATTCGGGTTTTGGTTTGGCCCACAAACTCGGAAGATAGACTGGCAGG ACCTTGCGAGTTTTGATAAGGACGAGACAATGCATAATTGAGAGGCTGTT TGTATTGTATTACTACAAGAGATGAATACGTGGTATATCTCACATATATG CTGGGCACGAAGGCACGCGCACGACAGAGAGCATTTTTATCGTGACAGCG AGAGTATTTGTACTGTGACCATATAAATGAGTGTGGTGGTCTTGGTGGAG GGAGAGAGAATGGGGATAAAATAGTGAGAAAAATTGTGGCTGGATACGAG GATCATACTACTGTCACAAAGTGGAATTCTTGAACAGGATTTATTTAAGT GTGTGATGAAACTTTTTGCATTAAAAGTAGGTGATGAAATATTTT
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Coding sequence (CDS) from alignment at chr2:103535..107279-

>NO02G00290.1 ID=NO02G00290.1|Name=NO02G00290.1|organism=Nannochloropsis oceanica|type=CDS|length=1125bp|location=Sequence derived from alignment at chr2:103535..107279- (Nannochloropsis oceanica)
ATGCTTGCCCGTGCTTTGCTGCCCAAACGCGGCGGTGTCGTCGCGGTCGC
GTTCCTGCGAGCCTCCGCTTCCACCATGCCGACGATGCACACCCGCACCG
TGGTCTCGCAGCGCGCCTTCATGGCTGCGCATTCTCACTACCCTACGATT
TTCAACCGGGCCCTAAGCACGACAATGAAGCCGGAGGAGGACACCGCCCC
GATTGCCGACGCCACCAACCCCAGGAAGGCTGCCGTGGAGGAGAGCTTGC
GTGACGGGGCCCGCTCCATCGTGCACTTCAAGCTGAGCCCCAACCGCCAT
GCCCTTAACGTGCCCAAACTCGACCCGAAAGAGAAGATCTGGGAAAACCC
TACCCACCACAGCGTCTGGACCAAGGAAGAGGTCGAGAGCGTTCAGATCA
CGCATCTCCCACCAGCGGATTGGACCTCCCGGGTCGCTTATGGCCTAGCG
CAAACCCTCCGGTTCAGTTTCGACCTGTTGGCGGGCTTCAAACACCGCAA
GGCCACTGAGGATATGTTCCTGAACCGTGTCGTATTCCTCGAGACCGTGG
CGGGCATTCCCGGCATGGCAGCCGGCATGATTCGTCACCTACACAGCCTC
CGCCGGATGAAGCGGGACCACGGGTGGATCCACACCTTGTTGGAGGAGGC
AGAGAACGAGCGTATGCACTTGTTGACCTTCATGAGGTTGAAGCAGCCGG
GTCCCTTTTTTCGCTTCTCGGTGTTGGTGGTACAAGGAGTGTTCTTCAAC
GTCTTTTTCCTCTCGTACCTGATCAATCCCAAGATTTGCCATCGCCTCGT
TGGTCACATCGAGGAGGAGGCCGTTAAGACGTACACGCACATCATCGACA
TGATGGATGCCGGAGAGCTGCCCTTGTTCAACCACATCATCCCTCCGCCC
ATCGCCGTGTCGTACTGGAAGCTAGCTCCTGATGCCACCTTCCGCGACCT
GCTTCTGGCGATCCGCAAGGATGAGGCCACGCACCGTGAAGTTAACCACA
CCTTTGCAAGCATGGACGAGAACGATGACAACCCCTTCCTTGCAGAGGAG
CAGTACCGCGCGCAAGTGGAGATGCATAACTCCACGGCCATGACGTCGGA
GAAGGAGAAAAATAAGATGGCGTAA
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Synonyms
Publications