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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:103535..107279 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G00290.1 vs.
Match: EWM30635.1 (alternative oxidase [Nannochloropsis gaditana]) HSP 1 Score: 564.3 bits (1453), Expect = 2.800e-157 Identity = 280/370 (75.68%), Postives = 314/370 (84.86%), Query Frame = 0
Query: 1 MLARALLPKRGGVVAVAFLRASAST-MPTMHTRTVVSQRAFMAAHSHYPTIFNRALSTTMKPEEDTAPIADATNPRKAAVEESLRDGARSIVHFKLSPNRHALNVPKLDPKEKIWENPTHHSVWTKEEVESVQITHLPPADWTSRVAYGLAQTLRFSFDLLAGFKHRKATEDMFLNRVVFLETVAGIPGMAAGMIRHLHSLRRMKRDHGWIHTLLEEAENERMHLLTFMRLKQPGPFFRFSVLVVQGVFFNVFFLSYLINPKICHRLVGHIEEEAVKTYTHIIDMMDAGELPLFNHIIPPPIAVSYWKLAPDATFRDLLLAIRKDEATHREVNHTFASMDENDDNPFLAEEQYRAQVEMHNSTAMTSEKE 370
MLARA+LP R G +A AFL+ S++T MP + + R T+F RA+STT+KPEE A +E LRDGARSI+HFKLSPNRHALNVPKLDPKEK+WENPTHHSVWTKEEVE+V++THLPPADWTSRVAY +AQTLRFSFD+LAGFK RKATEDM+LNR+VFLETVAGIPGMAAGMIRHLHSLRRM+RDHGWIHTLLEEAENERMHLLTFMRLK+PGP FR +VLVVQGVFFNVFFLSYLINPKICHRLVGHIEEEAV+TYTHII+ MDAG+LPLFNH+IPPPIAVSYWKLAPDATFRDLLLAIRKDEATHREVNHTFA++ ENDDNPFLAEE+YRA++ +EK+
Sbjct: 1 MLARAVLPTRSGSLAAAFLKTSSATIMPPKQLQGL--SRTLQVKSYRQSTVFYRAMSTTLKPEERAGTFTPAAPSTTTQEKEELRDGARSIIHFKLSPNRHALNVPKLDPKEKVWENPTHHSVWTKEEVENVEVTHLPPADWTSRVAYTIAQTLRFSFDVLAGFKFRKATEDMYLNRMVFLETVAGIPGMAAGMIRHLHSLRRMQRDHGWIHTLLEEAENERMHLLTFMRLKRPGPLFRAAVLVVQGVFFNVFFLSYLINPKICHRLVGHIEEEAVRTYTHIIEEMDAGQLPLFNHVIPPPIAVSYWKLAPDATFRDLLLAIRKDEATHREVNHTFANLKENDDNPFLAEEEYRAKITTMGQPTPVAEKK 368
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G00290.1 ID=NO02G00290.1|Name=NO02G00290.1|organism=Nannochloropsis oceanica|type=mRNA|length=2372bp ATAGTTTAGTTCTTTTTTGTTCTCCTACAATCCTAGAACTATCGCATGCA ACCTGACGTCCTCTAGAACTTGCATACGAGGGGAAGCCTTCCAAAACAAA ATGTTGCATATTCTTCCCCTTATTTTTATCCGAGTCGGTAAGCGGCCTTC ACAGATTTTCAGTCGTTGGGGGTAGTACAATTGGGATTTGGGGCAGAGTT AGGTAGACAATGTAGCTTTGCTCATGAGTCAGGTTGGAACATACCGATCT TTTCATTGTGTCGAGTACGAGCTTATACATGTCAGAGCTGCACACCCCCC GAGATGGCTCTATCCATGGGGGTATGACAGTGTCGGCATGTTACGGAAGT GCCATAAAAACCCCTCCCATGGGGTATTTTCTATCTTTGTAAGGCAGCAG CAAGTCAAGTCAAGTCAAGTCAAAAATCGGATTCTGATCGGTCGGCAGAG TCATGGCCGATCAGATCAACACACATGGAGCACCTGCCACGTCCCCTTCC CTTCCCTAGATGGAAAATGGCTTTTCACGCAGAGCAATAAACATTTTGCC CTCGCCAACTGGTCTTGACTGTGTCCCCAGCATTGCTTCGAGTCCCACTG GCATGGGACATAAAACGCCGCTTCCCCCGCGATCCCACCAGATGTATTCT TCGCCCGTTGGGGATCCTTGCGCCTCCTGTCGCGATGCAGTTCACGAACG ACATACATTCATTCCACGTATATCACGTCTTCCTCCATTTTTCCCATCCC TAAACCTTTTCCATCCCACACAGCCTTTATTTAATCACCCACCCGACCAC AGCAGCACACCAGCTGTCCAGCCATGCTTGCCCGTGCTTTGCTGCCCAAA CGCGGCGGTGTCGTCGCGGTCGCGTTCCTGCGAGCCTCCGCTTCCACCAT GCCGACGATGCACACCCGCACCGTGGTCTCGCAGCGCGCCTTCATGGCTG CGCATTCTCACTACCCTACGATTTTCAACCGGGCCCTAAGCACGACAATG AAGCCGGAGGAGGACACCGCCCCGATTGCCGACGCCACCAACCCCAGGAA GGCTGCCGTGGAGGAGAGCTTGCGTGACGGGGCCCGCTCCATCGTGCACT TCAAGCTGAGCCCCAACCGCCATGCCCTTAACGTGCCCAAACTCGACCCG AAAGAGAAGATCTGGGAAAACCCTACCCACCACAGCGTCTGGACCAAGGA AGAGGTCGAGAGCGTTCAGATCACGCATCTCCCACCAGCGGATTGGACCT CCCGGGTCGCTTATGGCCTAGCGCAAACCCTCCGGTTCAGTTTCGACCTG TTGGCGGGCTTCAAACACCGCAAGGCCACTGAGGATATGTTCCTGAACCG TGTCGTATTCCTCGAGACCGTGGCGGGCATTCCCGGCATGGCAGCCGGCA TGATTCGTCACCTACACAGCCTCCGCCGGATGAAGCGGGACCACGGGTGG ATCCACACCTTGTTGGAGGAGGCAGAGAACGAGCGTATGCACTTGTTGAC CTTCATGAGGTTGAAGCAGCCGGGTCCCTTTTTTCGCTTCTCGGTGTTGG TGGTACAAGGAGTGTTCTTCAACGTCTTTTTCCTCTCGTACCTGATCAAT CCCAAGATTTGCCATCGCCTCGTTGGTCACATCGAGGAGGAGGCCGTTAA GACGTACACGCACATCATCGACATGATGGATGCCGGAGAGCTGCCCTTGT TCAACCACATCATCCCTCCGCCCATCGCCGTGTCGTACTGGAAGCTAGCT CCTGATGCCACCTTCCGCGACCTGCTTCTGGCGATCCGCAAGGATGAGGC CACGCACCGTGAAGTTAACCACACCTTTGCAAGCATGGACGAGAACGATG ACAACCCCTTCCTTGCAGAGGAGCAGTACCGCGCGCAAGTGGAGATGCAT AACTCCACGGCCATGACGTCGGAGAAGGAGAAAAATAAGATGGCGTAAGC AAAGCAGTGAGTGAGGTTGAAGGGACCATCATTCGGGTTTTGGTTTGGCC CACAAACTCGGAAGATAGACTGGCAGGACCTTGCGAGTTTTGATAAGGAC GAGACAATGCATAATTGAGAGGCTGTTTGTATTGTATTACTACAAGAGAT GAATACGTGGTATATCTCACATATATGCTGGGCACGAAGGCACGCGCACG ACAGAGAGCATTTTTATCGTGACAGCGAGAGTATTTGTACTGTGACCATA TAAATGAGTGTGGTGGTCTTGGTGGAGGGAGAGAGAATGGGGATAAAATA GTGAGAAAAATTGTGGCTGGATACGAGGATCATACTACTGTCACAAAGTG GAATTCTTGAACAGGATTTATTTAAGTGTGTGATGAAACTTTTTGCATTA AAAGTAGGTGATGAAATATTTT back to topprotein sequence of NO02G00290.1 >NO02G00290.1-protein ID=NO02G00290.1-protein|Name=NO02G00290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=375bp MLARALLPKRGGVVAVAFLRASASTMPTMHTRTVVSQRAFMAAHSHYPTI FNRALSTTMKPEEDTAPIADATNPRKAAVEESLRDGARSIVHFKLSPNRH ALNVPKLDPKEKIWENPTHHSVWTKEEVESVQITHLPPADWTSRVAYGLA QTLRFSFDLLAGFKHRKATEDMFLNRVVFLETVAGIPGMAAGMIRHLHSL RRMKRDHGWIHTLLEEAENERMHLLTFMRLKQPGPFFRFSVLVVQGVFFN VFFLSYLINPKICHRLVGHIEEEAVKTYTHIIDMMDAGELPLFNHIIPPP IAVSYWKLAPDATFRDLLLAIRKDEATHREVNHTFASMDENDDNPFLAEE QYRAQVEMHNSTAMTSEKEKNKMA* back to topmRNA from alignment at chr2:103535..107279- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G00290.1 ID=NO02G00290.1|Name=NO02G00290.1|organism=Nannochloropsis oceanica|type=mRNA|length=3745bp|location=Sequence derived from alignment at chr2:103535..107279- (Nannochloropsis oceanica) ATAGTTTAGTTCTTTTTTGTTCTCCTACAATCCTAGAACTATCGCATGCA
ACCTGACGTCCTCTAGAACTTGCATACGAGGGGAAGCCTTCCAAAACAAA
ATGTTGCATATTCTTCCCCTTATTTTTATCCGAGTCGGTAAGCGGCCTTC
ACAGATTTTCAGTCGTTGGGGGTAGTACAATTGGGATTTGGGGCAGAGTT
AGGTAGACAATGTAGCTTTGCTCATGAGTCAGGTTGGAACATACCGATCT
TTTCATTGTGTCGAGTACGAGCTTATACATGTCAGAGCTGCACACCCCCC
GAGATGGCTCTATCCATGGGGGTATGACAGTGTCGGCATGTTACGGAAGT
GCCATAAAAACCCCTCCCATGGGGTATTTTCTATCTTTGTAAGGCAGCAG
CAAGTCAAGTCAAGTCAAGTCAAAAATCGGATTCTGATCGGTCGGCAGAG
TCATGGCCGATCAGATCAACACACATGGAGCACCTGCCACGTCCCCTTCC
CTTCCCTAGATGGAAAATGGCTTTTCACGCAGAGCAATAAACATTTTGCC
CTCGCCAACTGGTCTTGACTGTGTCCCCAGCATTGCTTCGAGTCCCACTG
GCATGGGACATAAAACGCCGCTTCCCCCGCGATCCCACCAGATGTATTCT
TCGCCCGTTGGGGATCCTTGCGCCTCCTGTCGCGATGCAGTTCACGAACG
ACATACATTCATTCCACGTATATCACGTCTTCCTCCATTTTTCCCATCCC
TAAACCTTTTCCATCCCACACAGCCTTTATTTAATCACCCACCCGACCAC
AGCAGCACACCAGCTGTCCAGCCATGCTTGCCCGTGCTTTGCTGCCCAAA
CGCGGCGGTGTCGTCGCGGTCGCGTTCCTGCGAGCCTCCGCTTCCACCAT
GCCGACGATGCACACCCGCACCGTGGTCTCGCAGCGCGCCTTCATGGCTG
CGCATTCTCACTACCCTACGATTTTCAACCGGGCCCTAAGCACGACAATG
AAGCCGGAGGAGGACACCGGTAAGTATGTGTGTTTGCCTGGAGGAAATAC
GGCCGCTCAGCAAGCAGCCCTGTCATAAGCCTCGAGGCTAGGGTATGTAG
GAGTGGGTTCGCGAGTAGATGGGACGACTGCCTTGCTGTTTGTGACCGAT
CTACTCGCCCTTACACATATGCATTTTCCTTTCCACACAAACGCACCCCC
TACCCATCCCCACGCACAGCCCCGATTGCCGACGCCACCAACCCCAGGAA
GGCTGCCGTGGAGGAGAGCTTGCGTGACGGGGCCCGCTCCATCGTGCACT
TCAAGCTGAGCCCCAACCGCCATGCCCTTAACGTGCCCAAACTCGACCCG
AAAGAGAAGATCTGGGAAAACCCTACCCACCACAGCGTCTGGACCAAGGA
AGAGGTCGAGAGCGTTCAGATCACGCATCTCCCACCAGCGGATGTGAGTA
GCAAAGCATATGGGTGACGTGTCGATAGCGTGTGTGTGCATGAGCGGTGT
TAGGAAGTCCTCACATCGCCGTCTCCCCTCTACTTTGCCTCATCACCACC
TGAGGGCGTGTGCCTCCCTTCTTCCCTTACTCGCTCGTGACAAGCTTACG
TTTCTTTACACATCCTCCTTCGATGTGTGGCCTCTCCCTGGCCTGCAAGC
TCATCCCTCCCCCCTCCCGCCTTCCCTCCCACCACATCAAACCCCAACAG
TGGACCTCCCGGGTCGCTTATGGCCTAGCGCAAACCCTCCGGTTCAGTTT
CGACCTGTTGGCGGGCTTCAAACACCGCAAGGCCACTGAGGATATGTTCC
TGAACCGTGTCGTATTCCTCGAGACCGTGGCGGGTACGTAGAGGATGGGG
GATGGAGCGTGTATCGAGAAATGGAGGGAGGGAAAAAAGAATATTGGACG
TCAGACGTGTCGTGTAAGCGTTTCCGTACTACCGTCGGAGGGTAAATATC
GTGTATAAACTAGCCTCTCCTCCCTCTTATCCTGTCACCGTATCCACTCG
CTCTCCCTCCTCCTCTTCCTCCTCCTTCTCCTCCTCCCTCCGACCTCCTC
CTCCTCCACCACCACCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCGCCTTTTTTTGTTTTCCTTGCAGGCATTCCCGGCATGGC
AGCCGGCATGATTCGTCACCTACACAGCCTCCGCCGGATGAAGCGGGACC
ACGGGTGGATCCACACCTTGTTGGAGGAGGCAGAGAACGAGCGTATGCAC
TTGTTGACCTTCATGAGGTTGAAGCAGCCGGGTCCCTTTTTTCGCTTCTC
GGTGTTGGTGGTACAAGGAGTGTTCTTCAACGGTGCGTTTCGGCAGGGGG
GGAGAGGGGGGACTTTAAACTCAGCATCATTCCTCTTGCTTAACCATCCC
TTTCATTCACATTTGTACCCACCACCACCCACATAGTCTTTTTCCTCTCG
TACCTGATCAATCCCAAGATTTGCCATCGCCTCGTTGGTCACATCGAGGA
GGAGGCCGTTAAGACGGTAAGTCGCTCGAGCTTCAAGGGAGGGACGGGGG
GTTGTAGGGCGGAACGGCGTGGTACAAGAAACACCAGCTGCTGTATTATT
GTCTATTGCAGGCAGAGGCGAGTATGCACCTTGTTCCGTACGCTGTAGGA
CATTGGAGGAGCGGATCGGATCGCAGTGACGGTAGCATGAGGTAGCGTGG
TGCTCACTCGCATTTTGGAGTTCATGTCTTTTATTCTAATCCCCATCCCA
ACCTATGTACTCCCCCACATAGTACACGCACATCATCGACATGATGGATG
CCGGAGAGCTGCCCTTGTTCAACCACATCATCCCTCCGCCCATCGCCGTG
TCGTACTGGAAGCTAGGTATGTTGACGGGCAATGGGAGCAGTGCACCCAC
ATAGAAGGAAGTTCGCGAACGACTGCACATACACACACATACATACGCAT
ACATACACACGTGCACACACGTACGAACTAGGGGGTGCGCATCACGTGCA
TTAATATATTAGCACGCATACACACGCTTGTGCACATAAAGATAATGTAA
TAATATATCACGCTCATTCCCTCGTATCGTTACGCTCATTTTCCTGTCAA
TACAAACACGCAAACACACAGCTCCTGATGCCACCTTCCGCGACCTGCTT
CTGGCGATCCGCAAGGATGAGGCCACGCACCGTGAAGTTAACCACACCTT
TGCAAGCATGGACGAGAACGATGACAACCCCTTCCTTGCAGAGGAGCAGT
ACCGCGCGCAAGTGGAGATGCATAACTCCACGGCCATGACGTCGGAGAAG
GAGAAAAATAAGATGGCGTAAGCAAAGCAGTGAGTGAGGTTGAAGGGACC
ATCATTCGGGTTTTGGTTTGGCCCACAAACTCGGAAGATAGACTGGCAGG
ACCTTGCGAGTTTTGATAAGGACGAGACAATGCATAATTGAGAGGCTGTT
TGTATTGTATTACTACAAGAGATGAATACGTGGTATATCTCACATATATG
CTGGGCACGAAGGCACGCGCACGACAGAGAGCATTTTTATCGTGACAGCG
AGAGTATTTGTACTGTGACCATATAAATGAGTGTGGTGGTCTTGGTGGAG
GGAGAGAGAATGGGGATAAAATAGTGAGAAAAATTGTGGCTGGATACGAG
GATCATACTACTGTCACAAAGTGGAATTCTTGAACAGGATTTATTTAAGT
GTGTGATGAAACTTTTTGCATTAAAAGTAGGTGATGAAATATTTT back to topCoding sequence (CDS) from alignment at chr2:103535..107279- >NO02G00290.1 ID=NO02G00290.1|Name=NO02G00290.1|organism=Nannochloropsis oceanica|type=CDS|length=1125bp|location=Sequence derived from alignment at chr2:103535..107279- (Nannochloropsis oceanica) ATGCTTGCCCGTGCTTTGCTGCCCAAACGCGGCGGTGTCGTCGCGGTCGC GTTCCTGCGAGCCTCCGCTTCCACCATGCCGACGATGCACACCCGCACCG TGGTCTCGCAGCGCGCCTTCATGGCTGCGCATTCTCACTACCCTACGATT TTCAACCGGGCCCTAAGCACGACAATGAAGCCGGAGGAGGACACCGCCCC GATTGCCGACGCCACCAACCCCAGGAAGGCTGCCGTGGAGGAGAGCTTGC GTGACGGGGCCCGCTCCATCGTGCACTTCAAGCTGAGCCCCAACCGCCAT GCCCTTAACGTGCCCAAACTCGACCCGAAAGAGAAGATCTGGGAAAACCC TACCCACCACAGCGTCTGGACCAAGGAAGAGGTCGAGAGCGTTCAGATCA CGCATCTCCCACCAGCGGATTGGACCTCCCGGGTCGCTTATGGCCTAGCG CAAACCCTCCGGTTCAGTTTCGACCTGTTGGCGGGCTTCAAACACCGCAA GGCCACTGAGGATATGTTCCTGAACCGTGTCGTATTCCTCGAGACCGTGG CGGGCATTCCCGGCATGGCAGCCGGCATGATTCGTCACCTACACAGCCTC CGCCGGATGAAGCGGGACCACGGGTGGATCCACACCTTGTTGGAGGAGGC AGAGAACGAGCGTATGCACTTGTTGACCTTCATGAGGTTGAAGCAGCCGG GTCCCTTTTTTCGCTTCTCGGTGTTGGTGGTACAAGGAGTGTTCTTCAAC GTCTTTTTCCTCTCGTACCTGATCAATCCCAAGATTTGCCATCGCCTCGT TGGTCACATCGAGGAGGAGGCCGTTAAGACGTACACGCACATCATCGACA TGATGGATGCCGGAGAGCTGCCCTTGTTCAACCACATCATCCCTCCGCCC ATCGCCGTGTCGTACTGGAAGCTAGCTCCTGATGCCACCTTCCGCGACCT GCTTCTGGCGATCCGCAAGGATGAGGCCACGCACCGTGAAGTTAACCACA CCTTTGCAAGCATGGACGAGAACGATGACAACCCCTTCCTTGCAGAGGAG CAGTACCGCGCGCAAGTGGAGATGCATAACTCCACGGCCATGACGTCGGA GAAGGAGAAAAATAAGATGGCGTAA back to top
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