NO02G00280.1, NO02G00280.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G00280.1
Unique Name	NO02G00280.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1938
Alignment location	chr2:99719..102974 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:99719..102974 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO02G00280.1 vs.
Match: XP_005853535.1 (ethylmalonic encephalopathy 1 [Nannochloropsis gaditana CCMP526]; EKU22823.1 ethylmalonic encephalopathy 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 335.5 bits (859), Expect = 2.300e-88
Identity = 186/385 (48.31%), Postives = 244/385 (63.38%), Query Frame = 0

Query:   17 AGALSEADIQELVPRFSGWLYLCTDSGPDSGV-PGGFPSIVKGHEGGKHVHVPVNHSD-LDLALTRRLFKARATLVGPAPSTTGPLFITCRSNARAGAVALLYYAQDKKIEAASAPSPEDIIEWGRKQGLSFFSNAALVDWVMASLYFILKGPEERPRPLFHQLFEPESSTYTYLLADPESKEAILIDPVDLMVERDVKLVKELGLTCLFGVNTHCHADHVTGTHLLKQQIPGLKSVIARTSEAKADVLKEDKEKIRFGQYYLEFRATPGHTSGCMSLVMDDRSMVFTGDALLIRGCGRTDFQQGDAHMLFQSVHSRLFTLPGDCVVYPAHDYHGRMSSSIREEKQHNPRLS-KSEEEFVTLMKNLNLPYPKKIDEALPRNLVCG 399
            AG L EA+   L  ++   LYL TD G D G+ P GF S+     G    H+PV+  D L L L     +A   L  PA        + C S  RA AV  L  A ++        + +  + +  +  L F  N +L DWV+A++    +  +E P  LF  L+E  S TYT+LL  P +KEAILIDPVDL VERD++++KE+GLT +  +NTHCHADHVTG+ LL Q++PG KS+IA+ S AKA +  E   ++RFG+ Y+E RATPGHT+GCM+ V DD  M FTGDALLIRGCGRTDFQQG    +F+S+ +++F+LP +  VYP HDY GR+ S+I EEK+ N RLS KS+EEF+ +M NL L YPKKID ALP NLV G
Sbjct:   65 AGKLGEAETSALSDKYKSVLYLATDKGADKGIEPNGFASL----RGLTTRHLPVDVKDGLSLQLATDALQALDELPAPA-------LVVCSSGGRASAVQCLRKATEE------GWTKDQTLAYALEMKLPFVKNPSLKDWVLATVA-AREYKDELPL-LFRPLYEETSWTYTFLLGCPVTKEAILIDPVDLTVERDLQVIKEMGLTLVAALNTHCHADHVTGSGLLAQKVPGCKSMIAKISGAKASIHLEPGNRVRFGRRYVEARATPGHTNGCMTFVTDDMKMAFTGDALLIRGCGRTDFQQGSPETMFESIWTQIFSLPHETSVYPGHDYRGRLMSTIGEEKRFNSRLSGKSKEEFIEIMNNLKLAYPKKIDVALPANLVDG 430

The following BLAST results are available for this feature:

BLAST of NO02G00280.1 vs.

BLAST of NO02G00280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_005853535.1	2.300e-88	48.31	ethylmalonic encephalopathy 1 [Nannochloropsis gad...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO02G00280	NO02G00280	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO02G00280.1	NO02G00280.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO02G00280.1.cds1	NO02G00280.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G00280.1.cds2	NO02G00280.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G00280.1.cds3	NO02G00280.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G00280.1.cds4	NO02G00280.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G00280.1.cds5	NO02G00280.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G00280.1.cds6	NO02G00280.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G00280.1.cds7	NO02G00280.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G00280.1.cds8	NO02G00280.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr2:99719..102974-
coding sequence from alignment at chr2:99719..102974-

mRNA sequence

>NO02G00280.1 ID=NO02G00280.1|Name=NO02G00280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1938bp
AACCAAACAAGCAGAGCTACTCAAGCCGCTAAGCATCTATACCATGGCAC
CCCCTTCCTTCAAGCCCTTCGGTGATGACGGTACCTACGTTGCCGGAGCC
CTGTCCGAAGCCGACATTCAAGAGCTCGTCCCGCGCTTCTCTGGGTGGCT
TTACCTCTGCACTGATTCGGGACCTGACAGCGGCGTTCCCGGGGGCTTTC
CCAGCATTGTCAAAGGACATGAGGGGGGTAAGCATGTTCACGTCCCGGTC
AACCACTCCGACCTGGACCTGGCCTTGACCCGCCGCCTGTTTAAAGCACG
CGCTACACTTGTCGGTCCTGCTCCTTCTACTACCGGCCCCCTTTTTATCA
CCTGCCGATCCAATGCGCGGGCCGGGGCCGTGGCCTTGCTGTACTATGCA
CAGGACAAGAAAATTGAGGCTGCCAGCGCCCCTTCTCCCGAAGATATTAT
CGAATGGGGAAGGAAGCAGGGCCTTTCTTTCTTCAGCAACGCGGCGCTGG
TGGATTGGGTGATGGCTTCGTTGTATTTCATTTTAAAGGGACCCGAGGAA
CGCCCGAGGCCTCTATTTCATCAGCTTTTTGAGCCGGAGTCGTCTACGTA
TACTTACTTGCTGGCAGACCCGGAGAGCAAGGAAGCCATTCTGATCGATC
CCGTAGACCTGATGGTGGAAAGGGACGTGAAGCTCGTGAAGGAGCTTGGC
TTAACCTGTCTGTTTGGGGTCAACACGCACTGTCACGCCGACCACGTCAC
TGGCACGCACCTCCTGAAGCAGCAGATCCCGGGGTTGAAGAGCGTCATCG
CCAGGACGTCCGAAGCCAAGGCAGATGTGCTGAAGGAGGACAAGGAGAAG
ATCAGGTTCGGGCAATACTATTTGGAGTTTCGCGCCACGCCGGGGCACAC
GAGTGGCTGTATGTCTCTGGTCATGGACGATCGCTCTATGGTCTTTACAG
GAGATGCCCTTCTCATCCGCGGCTGTGGTCGGACAGACTTCCAGCAGGGT
GATGCCCACATGCTCTTCCAATCCGTCCACTCGCGTCTCTTCACGCTACC
CGGAGATTGCGTGGTGTATCCGGCTCACGACTACCACGGGCGGATGTCCT
CCAGCATCCGGGAGGAGAAGCAACACAACCCCCGCCTGTCCAAGTCGGAA
GAAGAGTTTGTGACGCTGATGAAGAATCTTAACCTTCCCTATCCCAAGAA
GATCGACGAGGCCTTACCTCGGAATCTGGTCTGCGGGTGCTGAGCAGCCG
CCTGGCCGTTCCTCCCTCCCTCCCTCCCTCACTCCCTCCCTCCTTCCCTC
CCTCCCATTCTCCTCCCATAGGGAGGGAGGGGTTTGGAGTCTGGAAAGGA
AGAGAGGGAGCGAGGCAAGAGGGGAGGGAGAGGAGGGGGGTGGGATGGGG
GAATCAGCCCGGGTTTCTCACTGAATCACTGAGCAGGGGGCGGGGGGAGG
GGGGGTGTGAGGGTATGAAGGGAAGGGTGTGAGGGTATGAATATGAAGGG
AAGGGTGTGAGTTTGAAGGAAAGGGTGTGAGTATGGAAGGGGGGGGAGGT
TAAGCCGCCCATGTTAGCGGGGATGGAAATGCGAGATGTGAATGAGGATT
TTTGGAGTAGAGACTAAGAAGGATTTGCCTGTGTGGCCTGCGCCGGGTGC
CTCAAGTTGGTTTCTGTATTACGTAGTTTGATTCGATTCGGTCTCATGTA
ATTTGATTTGATTTGATTTGATCGAATCTAATTTGATTTTGATTTGACCG
CCTGCCTAAATGCCACGGATCGGGCGGGACGCGTATATGAAGGACATGTG
AGTAGGGAGAGAGGGGAGCGAGAGGGGAAGAGGGGGGGAAAGACGTTAAT
GATTAAGAGAGAGAGAGAGAGGGAGAGAGGGAGAGAGGGAGAGAGAGGGA
GAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAAGGGGG

protein sequence of NO02G00280.1

>NO02G00280.1-protein ID=NO02G00280.1-protein|Name=NO02G00280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=400bp
MAPPSFKPFGDDGTYVAGALSEADIQELVPRFSGWLYLCTDSGPDSGVPG
GFPSIVKGHEGGKHVHVPVNHSDLDLALTRRLFKARATLVGPAPSTTGPL
FITCRSNARAGAVALLYYAQDKKIEAASAPSPEDIIEWGRKQGLSFFSNA
ALVDWVMASLYFILKGPEERPRPLFHQLFEPESSTYTYLLADPESKEAIL
IDPVDLMVERDVKLVKELGLTCLFGVNTHCHADHVTGTHLLKQQIPGLKS
VIARTSEAKADVLKEDKEKIRFGQYYLEFRATPGHTSGCMSLVMDDRSMV
FTGDALLIRGCGRTDFQQGDAHMLFQSVHSRLFTLPGDCVVYPAHDYHGR
MSSSIREEKQHNPRLSKSEEEFVTLMKNLNLPYPKKIDEALPRNLVCGC*

mRNA from alignment at chr2:99719..102974-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO02G00280.1 ID=NO02G00280.1|Name=NO02G00280.1|organism=Nannochloropsis oceanica|type=mRNA|length=3256bp|location=Sequence derived from alignment at chr2:99719..102974- (Nannochloropsis oceanica)
AACCAAACAAGCAGAGCTACTCAAGCCGCTAAGCATCTATACCATGGCAC
CCCCTTCCTTCAAGCCCTTCGGTGATGACGGTACCTACGTTGCCGGTACG
TAGACAAGACATGGCAGTGTGACAGTGGGTCACGCAGTGACAATTGTCGA
CCTTTGTCCTTTCCACTTGATTTCTATTCTCTCCCTCCTCGTCTCACAAC
AGGAGCCCTGTCCGAAGCCGACATTCAAGAGCTCGTCCCGCGCTTCTCTG
GGTGGCTTTACCTCTGCACTGATTCGGGACCTGACAGCGGCGTTCCCGGG
GGCTTTCCCAGCATTGTCAAAGGACATGAGGGGGGTAAGCATGTTCACGT
CCCGGTCAACCACTCCGACCTGGACCTGGCCTTGACCCGCCGCCTGTTTA
AAGCACGCGCTACACTTGTCGGTCCTGCTCCTTCTACTACCGGCCCCCTT
TTTATCACCTGCCGATCCAATGCGCGGGCCGGGGCCGTGGCCTTGCTGTA
CTATGCACAGGACAAGAAAATTGAGGCTGCCAGCGCCCCTTCTCCCGAAG
ATATTATCGAATGGGGAAGGAAGCAGGGCCTTTCTTTCTTCAGCAACGCG
GCGCTGGTGGATTGGGTGATGGCTTCGTTGTATTTCATTTTAAAGGGACC
CGAGGAACGCCCGAGGCCTCTATTTCATCAGCTTTTTGAGCCGGAGTCGT
CTACGTATACTTACTTGCTGGCAGACCCGGAGAGTGAGTGGGAGGAGAAG
TGGCAGGAGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAGGGAGA
AGAGGTGGAGGTGTGCATGACGGTCTTGGTTGCATGTCCCATACTCATAT
TTCTATCCTTTTTCCCTCTGTCCCTTGCCAGGCAAGGAAGCCATTCTGAT
CGATCCCGTAGACCTGATGGTGGAAAGGGACGTGAAGCTCGTGAAGGAGC
TTGGCTTAACCTGTCTGTTTGGGGTCAACACGCACTGTCACGCCGACCAC
GTCACTGGTAGGGTGGGAGGGGAGGGAGGGAAAGAAGAATGATTGAAAGA
GGGCGATCCGAGCAGTAGTGATGCTTGGCGGGCTGATTCTTGTACCCTCT
TCTGTTCTCCCCCCCCTCTCCCTCCCCTTTTACTCTCTCTCTCTCTTGGT
GTTTCTCGTTCTCTTCCTTTCGTCGCCCTCGTTTTCTCTCATTTCGACGT
GCTGTTACCCTCCCTCCCTCCTCAGGCACGCACCTCCTGAAGCAGCAGAT
CCCGGGGTTGAAGAGCGTCATCGCCAGGACGTCCGAAGCCAAGGCAGATG
TGCTGAAGGAGGACAAGGAGAAGATCAGGTAGGGAGGGAGGGAGGGAAGG
AGGAAGGGAGAGTAGAATGAGCATTCTGTAGTCCATACATGCATACATGA
GTACCTGCTCCCTTAAATCAATGGGCTTCACTCACCCCTCCCTCCCGCCC
TCTCTCCCTCCCTCCCATCCAGGTTCGGGCAATACTATTTGGAGTTTCGC
GCCACGCCGGGGCACACGAGTGGCTGTATGTCTCTGGTCATGGACGATCG
CTCTATGGTCTTTACAGGAGATGTGCGTAGGGCGGGAGGGTGACCTTTGT
TCCTGATTGCAAGGAAGACTCAAGCTCGTTTGGGTAGTCGTGGTGTGTCT
AGTACTCATCTCCTTCCCTCCCTACCTCCTTCCCTACCTCCCTCCTTCTT
TCCTCAGGCCCTTCTCATCCGCGGCTGTGGTCGGACAGACTTCCAGCAGG
GTGATGCCCACATGCTCTTCCAATCCGTCCACTCGCGTCTCTTCACGCTA
CCCGGAGATTGCGTGGTGAGGGCGGGAGGGAGGGAGGGAGGGACGGCGGG
AGGGAGGGACGGCGGGAGGGAGGGAGGGGTTAGCAGAGCAACGATAGGGC
GGGTAATCGCCTACGCGGAGACAAGAAGAGCTCGCTGAGGATTCTAATCT
CTCCCTCCCTCCCTCCCTCCCTCCCTCTTCCATGTAGGTGTATCCGGCTC
ACGACTACCACGGGCGGATGTCCTCCAGCATCCGGGAGGAGAAGCAACAC
AACCCCCGCCTGTCCAAGGTAATAAATTACCCACCAATATAAATATATAT
TTATATATAATTTATTACCCACCAACATTAATGTTTATATATAGATATAA
ATACACGTAATTACCCACCAGTGGAATTTTGTGCATGTATAGATTTATAG
ATACGTAATTACCCACCCATGGAAATATATGTATATAATTACCCACCAAT
GGAGATATATGTATATGTGGGTGGAGAGAGAGATATGCGTGAATAGTATA
AAGGGGGAAGGCTCATTTACCAACCATACAGATAGCTGAGAAGGAAGACT
AGAGAGAGAGAAAGGGGGCCGCACCTCCGCCTGCCTCGTTGCAATCGCTA
ACCACCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCCCGCCTGCAGTCGGAAGAAGAGTTTGTGACGCTGATGAAGAATCTTAA
CCTTCCCTATCCCAAGAAGATCGACGAGGCCTTACCTCGGAATCTGGTCT
GCGGGTGCTGAGCAGCCGCCTGGCCGTTCCTCCCTCCCTCCCTCCCTCAC
TCCCTCCCTCCTTCCCTCCCTCCCATTCTCCTCCCATAGGGAGGGAGGGG
TTTGGAGTCTGGAAAGGAAGAGAGGGAGCGAGGCAAGAGGGGAGGGAGAG
GAGGGGGGTGGGATGGGGGAATCAGCCCGGGTTTCTCACTGAATCACTGA
GCAGGGGGCGGGGGGAGGGGGGGTGTGAGGGTATGAAGGGAAGGGTGTGA
GGGTATGAATATGAAGGGAAGGGTGTGAGTTTGAAGGAAAGGGTGTGAGT
ATGGAAGGGGGGGGAGGTTAAGCCGCCCATGTTAGCGGGGATGGAAATGC
GAGATGTGAATGAGGATTTTTGGAGTAGAGACTAAGAAGGATTTGCCTGT
GTGGCCTGCGCCGGGTGCCTCAAGTTGGTTTCTGTATTACGTAGTTTGAT
TCGATTCGGTCTCATGTAATTTGATTTGATTTGATTTGATCGAATCTAAT
TTGATTTTGATTTGACCGCCTGCCTAAATGCCACGGATCGGGCGGGACGC
GTATATGAAGGACATGTGAGTAGGGAGAGAGGGGAGCGAGAGGGGAAGAG
GGGGGGAAAGACGTTAATGATTAAGAGAGAGAGAGAGAGGGAGAGAGGGA
GAGAGGGAGAGAGAGGGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGA
AGGGGG

Coding sequence (CDS) from alignment at chr2:99719..102974-

>NO02G00280.1 ID=NO02G00280.1|Name=NO02G00280.1|organism=Nannochloropsis oceanica|type=CDS|length=1200bp|location=Sequence derived from alignment at chr2:99719..102974- (Nannochloropsis oceanica)
ATGGCACCCCCTTCCTTCAAGCCCTTCGGTGATGACGGTACCTACGTTGC
CGGAGCCCTGTCCGAAGCCGACATTCAAGAGCTCGTCCCGCGCTTCTCTG
GGTGGCTTTACCTCTGCACTGATTCGGGACCTGACAGCGGCGTTCCCGGG
GGCTTTCCCAGCATTGTCAAAGGACATGAGGGGGGTAAGCATGTTCACGT
CCCGGTCAACCACTCCGACCTGGACCTGGCCTTGACCCGCCGCCTGTTTA
AAGCACGCGCTACACTTGTCGGTCCTGCTCCTTCTACTACCGGCCCCCTT
TTTATCACCTGCCGATCCAATGCGCGGGCCGGGGCCGTGGCCTTGCTGTA
CTATGCACAGGACAAGAAAATTGAGGCTGCCAGCGCCCCTTCTCCCGAAG
ATATTATCGAATGGGGAAGGAAGCAGGGCCTTTCTTTCTTCAGCAACGCG
GCGCTGGTGGATTGGGTGATGGCTTCGTTGTATTTCATTTTAAAGGGACC
CGAGGAACGCCCGAGGCCTCTATTTCATCAGCTTTTTGAGCCGGAGTCGT
CTACGTATACTTACTTGCTGGCAGACCCGGAGAGCAAGGAAGCCATTCTG
ATCGATCCCGTAGACCTGATGGTGGAAAGGGACGTGAAGCTCGTGAAGGA
GCTTGGCTTAACCTGTCTGTTTGGGGTCAACACGCACTGTCACGCCGACC
ACGTCACTGGCACGCACCTCCTGAAGCAGCAGATCCCGGGGTTGAAGAGC
GTCATCGCCAGGACGTCCGAAGCCAAGGCAGATGTGCTGAAGGAGGACAA
GGAGAAGATCAGGTTCGGGCAATACTATTTGGAGTTTCGCGCCACGCCGG
GGCACACGAGTGGCTGTATGTCTCTGGTCATGGACGATCGCTCTATGGTC
TTTACAGGAGATGCCCTTCTCATCCGCGGCTGTGGTCGGACAGACTTCCA
GCAGGGTGATGCCCACATGCTCTTCCAATCCGTCCACTCGCGTCTCTTCA
CGCTACCCGGAGATTGCGTGGTGTATCCGGCTCACGACTACCACGGGCGG
ATGTCCTCCAGCATCCGGGAGGAGAAGCAACACAACCCCCGCCTGTCCAA
GTCGGAAGAAGAGTTTGTGACGCTGATGAAGAATCTTAACCTTCCCTATC
CCAAGAAGATCGACGAGGCCTTACCTCGGAATCTGGTCTGCGGGTGCTGA

Synonyms

Publications