NO02G00200.1, NO02G00200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G00200.1
Unique NameNO02G00200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1175
Alignment locationchr2:78771..81029 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:78771..81029 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G00200.1 vs.
Match: EWM30647.1 (der1-like domain member 2 [Nannochloropsis gaditana])

HSP 1 Score: 454.1 bits (1167), Expect = 4.000e-124
Identity = 262/387 (67.70%), Postives = 294/387 (75.97%), Query Frame = 0
Query:    1 MTAPAARTAG---GSRRLLCSLVPIILLLLLPATTNSAYSHSVVTATSTTKRVTTRRRDGFKRAPTTTLTFITRKGEGASPFLSRLMRRRGGASAAAAAKKKQSL----------LEEDEEDDEALEEEEEEEEEEEEEEEEED----------EGVTEEDFNDGSYVSKLKKEYRRTPPLTKAYLLTSLGLTGAAMLFNKNQWPEWLLLDWSKVFTRLQLWRPLTSFLYFGTFGFNYLLSAHFMWTYMSHLEKLKCKNPAEFVTMVAFGVAFLLAGSQVMGFQPHYLGHNLSCYLVYIWSRMFEGQDVDVMGLFHLPAHLLPWFFVAQTVVLEQELPLSDLLGIAVGHLYHYASTRKLVRPPSFLRDIFAQEKLRKLYRKFEDDLH 365
            M   A R AG   G RR    +   +L LL  A+  +A +H++  A    + VT  R      A    L F++R+ EG S  L  L+R RGGA AA+AAK K  L           EE  E++E  EEEEEEEEEEEEEEEEED          EGVTEEDFNDGS+ SKLKKEYRRTPP+TKAYL+ SL +T AAMLFNKNQWPEWLLLDW+KV  RLQ+WRP TSFLYFG+FGFNYLLSAHFMWTYM+HLEKLKCKNPA+FVTMV FGV+FLL GS +MGFQPH+LGHNLSCYLVY+WSRMFEGQDVDVMGLFHLPAH+LPWFFVAQTVVLEQELPLSDLLGIAVGHLYHYASTRKLV+PP+FLR  FAQ+  RKLYR FEDDLH
Sbjct:   47 MRTNALRAAGYKHGDRRP--KVFSSVLSLLFFASVATAVAHNLPVACRWMRGVTINRE-----ATKEILPFMSRR-EGVSLALCSLIRSRGGARAASAAKDKHRLHNDRANDNVVEEEKAENEEEEEEEEEEEEEEEEEEEEEDAEEDEDDYDEEGVTEEDFNDGSFASKLKKEYRRTPPVTKAYLMASLSVTTAAMLFNKNQWPEWLLLDWAKVVGRLQIWRPFTSFLYFGSFGFNYLLSAHFMWTYMAHLEKLKCKNPADFVTMVLFGVSFLLVGSPLMGFQPHFLGHNLSCYLVYVWSRMFEGQDVDVMGLFHLPAHVLPWFFVAQTVVLEQELPLSDLLGIAVGHLYHYASTRKLVKPPAFLRVFFAQKHFRKLYRSFEDDLH 425          
The following BLAST results are available for this feature:
BLAST of NO02G00200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30647.14.000e-12467.70der1-like domain member 2 [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G00200NO02G00200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G00200.1NO02G00200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G00200.1.cds1NO02G00200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00200.1.cds2NO02G00200.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00200.1.cds3NO02G00200.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00200.1.cds4NO02G00200.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00200.1.cds5NO02G00200.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00200.1.cds6NO02G00200.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00200.1.cds7NO02G00200.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G00200.1 ID=NO02G00200.1|Name=NO02G00200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1175bp
ATGACAGCGCCCGCAGCACGAACAGCAGGAGGATCGAGACGCCTCCTCTG
TAGCCTGGTGCCCATCATCCTGCTTCTCCTCCTTCCAGCCACCACCAACT
CTGCATACAGCCACAGCGTCGTCACAGCGACAAGTACTACGAAAAGGGTC
ACGACGAGGAGAAGAGATGGCTTTAAGAGAGCACCTACTACCACGCTGAC
CTTCATAACGCGCAAGGGGGAGGGAGCGAGCCCCTTCCTCTCGCGTTTGA
TGCGGAGAAGGGGAGGAGCGAGCGCTGCTGCTGCGGCCAAGAAGAAACAG
AGTCTACTAGAAGAGGACGAGGAAGATGATGAGGCTCTGGAGGAGGAGGA
GGAGGAGGAGGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGATGAGGGCG
TGACCGAGGAGGACTTTAATGATGGATCGTATGTCTCGAAGCTCAAGAAG
GAATACAGACGGACACCGCCCTTGACCAAGGCCTACCTCCTCACCTCCCT
GGGGCTGACGGGTGCGGCGATGCTCTTTAACAAGAACCAGTGGCCTGAGT
GGCTCCTGCTCGACTGGAGCAAGGTCTTTACCAGGCTGCAGCTATGGCGC
CCCCTCACCTCATTCCTGTACTTCGGTACCTTCGGCTTCAACTACCTGCT
GTCCGCGCACTTTATGTGGACCTACATGTCCCATCTCGAGAAACTCAAGT
GCAAGAATCCGGCAGAGTTTGTGACTATGGTGGCCTTCGGCGTCGCATTC
CTCCTGGCCGGGAGCCAAGTGATGGGCTTCCAACCGCACTACCTCGGCCA
CAACCTCAGCTGCTACCTGGTCTATATCTGGAGTCGGATGTTCGAAGGAC
AGGACGTGGACGTGATGGGTCTATTCCATCTCCCCGCACACCTCCTTCCC
TGGTTCTTCGTCGCTCAGACCGTCGTCCTCGAGCAGGAGCTGCCCCTCTC
GGACCTCCTCGGCATCGCCGTGGGCCACCTGTACCACTACGCTAGCACGC
GGAAACTCGTCCGCCCGCCCTCCTTCTTGAGAGATATCTTCGCACAAGAG
AAGCTTCGAAAGCTCTACCGCAAGTTCGAGGATGACTTGCACTGACAGAA
AGTAAAATAACACACAAGAGATGAATAAGGAGCCCCAGCGTTGGAGGCGG
AAGGCAATACTACCAACAATTAACT
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protein sequence of NO02G00200.1

>NO02G00200.1-protein ID=NO02G00200.1-protein|Name=NO02G00200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MTAPAARTAGGSRRLLCSLVPIILLLLLPATTNSAYSHSVVTATSTTKRV
TTRRRDGFKRAPTTTLTFITRKGEGASPFLSRLMRRRGGASAAAAAKKKQ
SLLEEDEEDDEALEEEEEEEEEEEEEEEEEDEGVTEEDFNDGSYVSKLKK
EYRRTPPLTKAYLLTSLGLTGAAMLFNKNQWPEWLLLDWSKVFTRLQLWR
PLTSFLYFGTFGFNYLLSAHFMWTYMSHLEKLKCKNPAEFVTMVAFGVAF
LLAGSQVMGFQPHYLGHNLSCYLVYIWSRMFEGQDVDVMGLFHLPAHLLP
WFFVAQTVVLEQELPLSDLLGIAVGHLYHYASTRKLVRPPSFLRDIFAQE
KLRKLYRKFEDDLH*
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mRNA from alignment at chr2:78771..81029+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G00200.1 ID=NO02G00200.1|Name=NO02G00200.1|organism=Nannochloropsis oceanica|type=mRNA|length=2259bp|location=Sequence derived from alignment at chr2:78771..81029+ (Nannochloropsis oceanica)
ATGACAGCGCCCGCAGCACGAACAGCAGGAGGATCGAGACGCCTCCTCTG TAGCCTGGTGCCCATCATCCTGCTTCTCCTCCTTCCAGCCACCACCAACT CTGCATACAGCCACAGCGTCGTCACAGCGACAAGTACTACGAAAAGGGTC ACGACGAGGAGAAGAGATGGCTTTAAGAGAGCACCTACTACCACGCTGAC CTTCATAACGCGCAAGGGGGAGGGAGCGAGCCCCTTCCTCTCGCGTTTGA TGCGGAGAAGGGGAGGAGCGAGCGCTGCTGCTGCGGCCAAGAAGAAACAG AGTCTACTAGAAGAGGACGAGGAAGATGATGAGGCTCTGGAGGAGGAGGA GGAGGAGGAGGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGATGAGGGCG TGACCGAGGAGGACTTTAATGTACGTGTGAGAGCGAGGCATAGGAAGAGA AAGATATTTGGTATTATTAAAAATGAGTCAGACCCCTCCTCCAAAATCAG TCCTTTTTTCGCCTTGGTTGATATTTTTCATAACCACCCCCCCCCTCCCC CCTCCCTCCCTCGTCGTCCTCAGGATGGATCGTATGTCTCGAAGCTCAAG AAGGAATACAGACGGACACCGCCCTTGACCAAGGTAAGGTGCAAGGGAGG GAGGACGGGAGGGAGGACAAAAGAGGAAGGACAGCTGGATGATGTCCCTC GGGGCTCACCACCCAAACACCGCTCTCTCCGTCCTCCTTCGCTCTCTTCC CTCCCTCCCTCACTCACTGCAGGCCTACCTCCTCACCTCCCTGGGGCTGA CGGGTGCGGCGATGCTCTTTAACAAGAACCAGTGGCCTGAGTGGCTCCTG CTCGACTGGAGCAAGGTCTTTACCAGGCTGCAGGTAGGGAGGGAGGGAGG GAGGGAGGGAGGGAGAGAGAGAGAGAGGAATGAAAGCAGCTGACGCCCGA GAGGTAGTATCTTCTGATAGGAGAGCGAGGACGTATCAATAATATAGATC ATTTCGATTGCTCTGACCACTTACGCCGCCTCCCTCCCTCCCTCCCTCCC TTCCTCCCTCCCTCTCTTCCTCCCTAGCTATGGCGCCCCCTCACCTCATT CCTGTACTTCGGTACCTTCGGCTTCAACTACCTGCTGTCCGCGCACTTTA TGTGGACCTACATGTCCCATCTCGAGAAACTCAAGTGCAAGAATCCGGCA GAGTTTGTGACTATGGTGCGTGCGCCCTCACCCCTCTCGCCCTTCCTCCT TCCCTCCCTTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCGACGGCA TCTGTAGACAGACACTCACCAGGAGCTCGCCTCCTCGTCCTCCTCCCTCC CTCTCCCCCCCCTCTCCTCCCCTCTGGTCTCCTCGCAGGTGGCCTTCGGC GTCGCATTCCTCCTGGCCGGGAGCCAAGTGATGGGCTTCCAACCGCACTA CCTCGGCCACAACCTCAGCTGCTACCTGGTCTATATCTGGAGTCGGATGT TCGAAGGACAGGTTAGGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG GAGGAAAGTGTGGGAGAAGAGCGAGGGCGATGGGATGCGAAGTGGGGTTT ATTCTTATCTTACCTTTGTATCACCCTCTATTCATTCTCATCTTACTTTC ATATTACCTTTTACTCATTCTTATCTTACCTGTGCTATCTTCCATCCAAC ATTCTCATCATACTTCCACATGAACCTCTTTCCACTCTCATCTTACTCCG ATACTGCCCTCCATATTTCGATCGACGCAGGACGTGGACGTGATGGGTCT ATTCCATCTCCCCGCACACCTCCTTCCCTGGTTCTTCGTCGCTCAGGTGC GTTGCGTGTTCCCTCCCTCCCTTCCTCCCTCCCTCCGTCCCTGTTGCTAC CACATTGGTCGACTTAAATCTTCATGCGCATTCCCAGGTACATCGCCACA CCACACAATTACCCACCGCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTC AGACCGTCGTCCTCGAGCAGGAGCTGCCCCTCTCGGACCTCCTCGGCATC GCCGTGGGCCACCTGTACCACTACGCTAGCACGCGGAAACTCGTCCGCCC GCCCTCCTTCTTGAGAGATATCTTCGCACAAGAGAAGCTTCGAAAGCTCT ACCGCAAGTTCGAGGATGACTTGCACTGACAGAAAGTAAAATAACACACA AGAGATGAATAAGGAGCCCCAGCGTTGGAGGCGGAAGGCAATACTACCAA CAATTAACT
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Coding sequence (CDS) from alignment at chr2:78771..81029+

>NO02G00200.1 ID=NO02G00200.1|Name=NO02G00200.1|organism=Nannochloropsis oceanica|type=CDS|length=1095bp|location=Sequence derived from alignment at chr2:78771..81029+ (Nannochloropsis oceanica)
ATGACAGCGCCCGCAGCACGAACAGCAGGAGGATCGAGACGCCTCCTCTG
TAGCCTGGTGCCCATCATCCTGCTTCTCCTCCTTCCAGCCACCACCAACT
CTGCATACAGCCACAGCGTCGTCACAGCGACAAGTACTACGAAAAGGGTC
ACGACGAGGAGAAGAGATGGCTTTAAGAGAGCACCTACTACCACGCTGAC
CTTCATAACGCGCAAGGGGGAGGGAGCGAGCCCCTTCCTCTCGCGTTTGA
TGCGGAGAAGGGGAGGAGCGAGCGCTGCTGCTGCGGCCAAGAAGAAACAG
AGTCTACTAGAAGAGGACGAGGAAGATGATGAGGCTCTGGAGGAGGAGGA
GGAGGAGGAGGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGATGAGGGCG
TGACCGAGGAGGACTTTAATGATGGATCGTATGTCTCGAAGCTCAAGAAG
GAATACAGACGGACACCGCCCTTGACCAAGGCCTACCTCCTCACCTCCCT
GGGGCTGACGGGTGCGGCGATGCTCTTTAACAAGAACCAGTGGCCTGAGT
GGCTCCTGCTCGACTGGAGCAAGGTCTTTACCAGGCTGCAGCTATGGCGC
CCCCTCACCTCATTCCTGTACTTCGGTACCTTCGGCTTCAACTACCTGCT
GTCCGCGCACTTTATGTGGACCTACATGTCCCATCTCGAGAAACTCAAGT
GCAAGAATCCGGCAGAGTTTGTGACTATGGTGGCCTTCGGCGTCGCATTC
CTCCTGGCCGGGAGCCAAGTGATGGGCTTCCAACCGCACTACCTCGGCCA
CAACCTCAGCTGCTACCTGGTCTATATCTGGAGTCGGATGTTCGAAGGAC
AGGACGTGGACGTGATGGGTCTATTCCATCTCCCCGCACACCTCCTTCCC
TGGTTCTTCGTCGCTCAGACCGTCGTCCTCGAGCAGGAGCTGCCCCTCTC
GGACCTCCTCGGCATCGCCGTGGGCCACCTGTACCACTACGCTAGCACGC
GGAAACTCGTCCGCCCGCCCTCCTTCTTGAGAGATATCTTCGCACAAGAG
AAGCTTCGAAAGCTCTACCGCAAGTTCGAGGATGACTTGCACTGA
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Synonyms
Publications