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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:78771..81029 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G00200.1 vs.
Match: EWM30647.1 (der1-like domain member 2 [Nannochloropsis gaditana]) HSP 1 Score: 454.1 bits (1167), Expect = 4.000e-124 Identity = 262/387 (67.70%), Postives = 294/387 (75.97%), Query Frame = 0
Query: 1 MTAPAARTAG---GSRRLLCSLVPIILLLLLPATTNSAYSHSVVTATSTTKRVTTRRRDGFKRAPTTTLTFITRKGEGASPFLSRLMRRRGGASAAAAAKKKQSL----------LEEDEEDDEALEEEEEEEEEEEEEEEEED----------EGVTEEDFNDGSYVSKLKKEYRRTPPLTKAYLLTSLGLTGAAMLFNKNQWPEWLLLDWSKVFTRLQLWRPLTSFLYFGTFGFNYLLSAHFMWTYMSHLEKLKCKNPAEFVTMVAFGVAFLLAGSQVMGFQPHYLGHNLSCYLVYIWSRMFEGQDVDVMGLFHLPAHLLPWFFVAQTVVLEQELPLSDLLGIAVGHLYHYASTRKLVRPPSFLRDIFAQEKLRKLYRKFEDDLH 365
M A R AG G RR + +L LL A+ +A +H++ A + VT R A L F++R+ EG S L L+R RGGA AA+AAK K L EE E++E EEEEEEEEEEEEEEEEED EGVTEEDFNDGS+ SKLKKEYRRTPP+TKAYL+ SL +T AAMLFNKNQWPEWLLLDW+KV RLQ+WRP TSFLYFG+FGFNYLLSAHFMWTYM+HLEKLKCKNPA+FVTMV FGV+FLL GS +MGFQPH+LGHNLSCYLVY+WSRMFEGQDVDVMGLFHLPAH+LPWFFVAQTVVLEQELPLSDLLGIAVGHLYHYASTRKLV+PP+FLR FAQ+ RKLYR FEDDLH
Sbjct: 47 MRTNALRAAGYKHGDRRP--KVFSSVLSLLFFASVATAVAHNLPVACRWMRGVTINRE-----ATKEILPFMSRR-EGVSLALCSLIRSRGGARAASAAKDKHRLHNDRANDNVVEEEKAENEEEEEEEEEEEEEEEEEEEEEDAEEDEDDYDEEGVTEEDFNDGSFASKLKKEYRRTPPVTKAYLMASLSVTTAAMLFNKNQWPEWLLLDWAKVVGRLQIWRPFTSFLYFGSFGFNYLLSAHFMWTYMAHLEKLKCKNPADFVTMVLFGVSFLLVGSPLMGFQPHFLGHNLSCYLVYVWSRMFEGQDVDVMGLFHLPAHVLPWFFVAQTVVLEQELPLSDLLGIAVGHLYHYASTRKLVKPPAFLRVFFAQKHFRKLYRSFEDDLH 425
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G00200.1 ID=NO02G00200.1|Name=NO02G00200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1175bp ATGACAGCGCCCGCAGCACGAACAGCAGGAGGATCGAGACGCCTCCTCTG TAGCCTGGTGCCCATCATCCTGCTTCTCCTCCTTCCAGCCACCACCAACT CTGCATACAGCCACAGCGTCGTCACAGCGACAAGTACTACGAAAAGGGTC ACGACGAGGAGAAGAGATGGCTTTAAGAGAGCACCTACTACCACGCTGAC CTTCATAACGCGCAAGGGGGAGGGAGCGAGCCCCTTCCTCTCGCGTTTGA TGCGGAGAAGGGGAGGAGCGAGCGCTGCTGCTGCGGCCAAGAAGAAACAG AGTCTACTAGAAGAGGACGAGGAAGATGATGAGGCTCTGGAGGAGGAGGA GGAGGAGGAGGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGATGAGGGCG TGACCGAGGAGGACTTTAATGATGGATCGTATGTCTCGAAGCTCAAGAAG GAATACAGACGGACACCGCCCTTGACCAAGGCCTACCTCCTCACCTCCCT GGGGCTGACGGGTGCGGCGATGCTCTTTAACAAGAACCAGTGGCCTGAGT GGCTCCTGCTCGACTGGAGCAAGGTCTTTACCAGGCTGCAGCTATGGCGC CCCCTCACCTCATTCCTGTACTTCGGTACCTTCGGCTTCAACTACCTGCT GTCCGCGCACTTTATGTGGACCTACATGTCCCATCTCGAGAAACTCAAGT GCAAGAATCCGGCAGAGTTTGTGACTATGGTGGCCTTCGGCGTCGCATTC CTCCTGGCCGGGAGCCAAGTGATGGGCTTCCAACCGCACTACCTCGGCCA CAACCTCAGCTGCTACCTGGTCTATATCTGGAGTCGGATGTTCGAAGGAC AGGACGTGGACGTGATGGGTCTATTCCATCTCCCCGCACACCTCCTTCCC TGGTTCTTCGTCGCTCAGACCGTCGTCCTCGAGCAGGAGCTGCCCCTCTC GGACCTCCTCGGCATCGCCGTGGGCCACCTGTACCACTACGCTAGCACGC GGAAACTCGTCCGCCCGCCCTCCTTCTTGAGAGATATCTTCGCACAAGAG AAGCTTCGAAAGCTCTACCGCAAGTTCGAGGATGACTTGCACTGACAGAA AGTAAAATAACACACAAGAGATGAATAAGGAGCCCCAGCGTTGGAGGCGG AAGGCAATACTACCAACAATTAACT back to topprotein sequence of NO02G00200.1 >NO02G00200.1-protein ID=NO02G00200.1-protein|Name=NO02G00200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp MTAPAARTAGGSRRLLCSLVPIILLLLLPATTNSAYSHSVVTATSTTKRV TTRRRDGFKRAPTTTLTFITRKGEGASPFLSRLMRRRGGASAAAAAKKKQ SLLEEDEEDDEALEEEEEEEEEEEEEEEEEDEGVTEEDFNDGSYVSKLKK EYRRTPPLTKAYLLTSLGLTGAAMLFNKNQWPEWLLLDWSKVFTRLQLWR PLTSFLYFGTFGFNYLLSAHFMWTYMSHLEKLKCKNPAEFVTMVAFGVAF LLAGSQVMGFQPHYLGHNLSCYLVYIWSRMFEGQDVDVMGLFHLPAHLLP WFFVAQTVVLEQELPLSDLLGIAVGHLYHYASTRKLVRPPSFLRDIFAQE KLRKLYRKFEDDLH* back to topmRNA from alignment at chr2:78771..81029+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G00200.1 ID=NO02G00200.1|Name=NO02G00200.1|organism=Nannochloropsis oceanica|type=mRNA|length=2259bp|location=Sequence derived from alignment at chr2:78771..81029+ (Nannochloropsis oceanica) ATGACAGCGCCCGCAGCACGAACAGCAGGAGGATCGAGACGCCTCCTCTG
TAGCCTGGTGCCCATCATCCTGCTTCTCCTCCTTCCAGCCACCACCAACT
CTGCATACAGCCACAGCGTCGTCACAGCGACAAGTACTACGAAAAGGGTC
ACGACGAGGAGAAGAGATGGCTTTAAGAGAGCACCTACTACCACGCTGAC
CTTCATAACGCGCAAGGGGGAGGGAGCGAGCCCCTTCCTCTCGCGTTTGA
TGCGGAGAAGGGGAGGAGCGAGCGCTGCTGCTGCGGCCAAGAAGAAACAG
AGTCTACTAGAAGAGGACGAGGAAGATGATGAGGCTCTGGAGGAGGAGGA
GGAGGAGGAGGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGATGAGGGCG
TGACCGAGGAGGACTTTAATGTACGTGTGAGAGCGAGGCATAGGAAGAGA
AAGATATTTGGTATTATTAAAAATGAGTCAGACCCCTCCTCCAAAATCAG
TCCTTTTTTCGCCTTGGTTGATATTTTTCATAACCACCCCCCCCCTCCCC
CCTCCCTCCCTCGTCGTCCTCAGGATGGATCGTATGTCTCGAAGCTCAAG
AAGGAATACAGACGGACACCGCCCTTGACCAAGGTAAGGTGCAAGGGAGG
GAGGACGGGAGGGAGGACAAAAGAGGAAGGACAGCTGGATGATGTCCCTC
GGGGCTCACCACCCAAACACCGCTCTCTCCGTCCTCCTTCGCTCTCTTCC
CTCCCTCCCTCACTCACTGCAGGCCTACCTCCTCACCTCCCTGGGGCTGA
CGGGTGCGGCGATGCTCTTTAACAAGAACCAGTGGCCTGAGTGGCTCCTG
CTCGACTGGAGCAAGGTCTTTACCAGGCTGCAGGTAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGAGAGAGAGAGAGGAATGAAAGCAGCTGACGCCCGA
GAGGTAGTATCTTCTGATAGGAGAGCGAGGACGTATCAATAATATAGATC
ATTTCGATTGCTCTGACCACTTACGCCGCCTCCCTCCCTCCCTCCCTCCC
TTCCTCCCTCCCTCTCTTCCTCCCTAGCTATGGCGCCCCCTCACCTCATT
CCTGTACTTCGGTACCTTCGGCTTCAACTACCTGCTGTCCGCGCACTTTA
TGTGGACCTACATGTCCCATCTCGAGAAACTCAAGTGCAAGAATCCGGCA
GAGTTTGTGACTATGGTGCGTGCGCCCTCACCCCTCTCGCCCTTCCTCCT
TCCCTCCCTTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCGACGGCA
TCTGTAGACAGACACTCACCAGGAGCTCGCCTCCTCGTCCTCCTCCCTCC
CTCTCCCCCCCCTCTCCTCCCCTCTGGTCTCCTCGCAGGTGGCCTTCGGC
GTCGCATTCCTCCTGGCCGGGAGCCAAGTGATGGGCTTCCAACCGCACTA
CCTCGGCCACAACCTCAGCTGCTACCTGGTCTATATCTGGAGTCGGATGT
TCGAAGGACAGGTTAGGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGAAAGTGTGGGAGAAGAGCGAGGGCGATGGGATGCGAAGTGGGGTTT
ATTCTTATCTTACCTTTGTATCACCCTCTATTCATTCTCATCTTACTTTC
ATATTACCTTTTACTCATTCTTATCTTACCTGTGCTATCTTCCATCCAAC
ATTCTCATCATACTTCCACATGAACCTCTTTCCACTCTCATCTTACTCCG
ATACTGCCCTCCATATTTCGATCGACGCAGGACGTGGACGTGATGGGTCT
ATTCCATCTCCCCGCACACCTCCTTCCCTGGTTCTTCGTCGCTCAGGTGC
GTTGCGTGTTCCCTCCCTCCCTTCCTCCCTCCCTCCGTCCCTGTTGCTAC
CACATTGGTCGACTTAAATCTTCATGCGCATTCCCAGGTACATCGCCACA
CCACACAATTACCCACCGCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTC
AGACCGTCGTCCTCGAGCAGGAGCTGCCCCTCTCGGACCTCCTCGGCATC
GCCGTGGGCCACCTGTACCACTACGCTAGCACGCGGAAACTCGTCCGCCC
GCCCTCCTTCTTGAGAGATATCTTCGCACAAGAGAAGCTTCGAAAGCTCT
ACCGCAAGTTCGAGGATGACTTGCACTGACAGAAAGTAAAATAACACACA
AGAGATGAATAAGGAGCCCCAGCGTTGGAGGCGGAAGGCAATACTACCAA
CAATTAACT back to topCoding sequence (CDS) from alignment at chr2:78771..81029+ >NO02G00200.1 ID=NO02G00200.1|Name=NO02G00200.1|organism=Nannochloropsis oceanica|type=CDS|length=1095bp|location=Sequence derived from alignment at chr2:78771..81029+ (Nannochloropsis oceanica) ATGACAGCGCCCGCAGCACGAACAGCAGGAGGATCGAGACGCCTCCTCTG TAGCCTGGTGCCCATCATCCTGCTTCTCCTCCTTCCAGCCACCACCAACT CTGCATACAGCCACAGCGTCGTCACAGCGACAAGTACTACGAAAAGGGTC ACGACGAGGAGAAGAGATGGCTTTAAGAGAGCACCTACTACCACGCTGAC CTTCATAACGCGCAAGGGGGAGGGAGCGAGCCCCTTCCTCTCGCGTTTGA TGCGGAGAAGGGGAGGAGCGAGCGCTGCTGCTGCGGCCAAGAAGAAACAG AGTCTACTAGAAGAGGACGAGGAAGATGATGAGGCTCTGGAGGAGGAGGA GGAGGAGGAGGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGATGAGGGCG TGACCGAGGAGGACTTTAATGATGGATCGTATGTCTCGAAGCTCAAGAAG GAATACAGACGGACACCGCCCTTGACCAAGGCCTACCTCCTCACCTCCCT GGGGCTGACGGGTGCGGCGATGCTCTTTAACAAGAACCAGTGGCCTGAGT GGCTCCTGCTCGACTGGAGCAAGGTCTTTACCAGGCTGCAGCTATGGCGC CCCCTCACCTCATTCCTGTACTTCGGTACCTTCGGCTTCAACTACCTGCT GTCCGCGCACTTTATGTGGACCTACATGTCCCATCTCGAGAAACTCAAGT GCAAGAATCCGGCAGAGTTTGTGACTATGGTGGCCTTCGGCGTCGCATTC CTCCTGGCCGGGAGCCAAGTGATGGGCTTCCAACCGCACTACCTCGGCCA CAACCTCAGCTGCTACCTGGTCTATATCTGGAGTCGGATGTTCGAAGGAC AGGACGTGGACGTGATGGGTCTATTCCATCTCCCCGCACACCTCCTTCCC TGGTTCTTCGTCGCTCAGACCGTCGTCCTCGAGCAGGAGCTGCCCCTCTC GGACCTCCTCGGCATCGCCGTGGGCCACCTGTACCACTACGCTAGCACGC GGAAACTCGTCCGCCCGCCCTCCTTCTTGAGAGATATCTTCGCACAAGAG AAGCTTCGAAAGCTCTACCGCAAGTTCGAGGATGACTTGCACTGA back to top
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