NO02G00180.1, NO02G00180.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G00180.1
Unique Name	NO02G00180.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	4428
Alignment location	chr2:69816..76609 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:69816..76609 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO02G00180.1 vs.
Match: EWM30650.1 (Kelch-type beta propeller [Nannochloropsis gaditana])

HSP 1 Score: 841.3 bits (2172), Expect = 2.900e-240
Identity = 477/695 (68.63%), Postives = 548/695 (78.85%), Query Frame = 0

Query:    1 MGKRDKRKKAAAKIGAAGGGKKDEKRKKQEAKSQKKATKGGCG-GEKEKELQEEDIEAILAEIRAKDAAKTAVTITESPQPSPRTNFSLTTLPSGELLLFGGEYYDGEDTTVYNGVFRWHLERGEWRKIESLNAPPPRCSHQAVSFRDYLYIFGGEFGTSDQFYHYRDLWRLDLKSNRWEELPSQKDTPSARSGHRICVWRHYLVLFGGFYEAFRETKWFNDVFLFNLQDLAWKKIILPATAPAPSPRSGCQMAVGGDVVYIHGGYSKVKPTVTTRGGTPQSSKAEGCVHDDMWALHMKNVPAGGQPFWERVSRKGTPPSPRSGATMVSYKTIALSFGGVHDVERKQHAISSLFYDDLYQFDMLRRRWYAVGLRNNSCRGRGGKEGGEEEGKKKRKKKGDGGGGGSGKKKKNGEGEEEDGKDEKEEEEEEEEEEEEEEEEEEEGFAYIDLDGNVVYIRGDELEAEEEAEEGEEEGGREGVEGGGRGQGEENLAMEVAPGKMEAAKDDG-QEEKKEHKAKLSASSSSMEAAAAAAAAARKTATAATAATAAPITAKKEIRVVEGFGLAVVETTASSLPSSPSSSGGWERIGPLPRINPALTMRGHLLYLYGGIYEDGDREYSLDDAWCLDLNKRQEWRCLLPGTMHLQVWKGEDDDTTLGGDSDDEDEDSDEEEEEEEEEEEEEEEGEESEGDGSS 694
            MGKRDKRKKAAAK+G AG GKK+EKRKKQEAKS+KKATKGG G GEK+KELQEEDIEAILAEIRAKDAAKTAVTI+E+PQPSPRTNFSLTTLPSGELLLFGGEYYDGEDT VYNGV+RWHLERGEWR IESLNAPPPRCSHQAV +R++LY+FGGEFGTSDQFYHYRDLWRLDLKSN+WEELP QKDTPSARSGHR+C+WRHYLVLFGGFYEAFRET+W+ND+FLFNLQDL WKKI+  ATAP P+PRSGCQMAVG D VYIHGGYSKVK TVTT  G  QSSKAEG VHDD WAL MK VPAGGQP+WERVSRKG+ PSPRSGA+M+SYKTIALSFGGVHDVE KQHA++S+FYDDLYQFDMLRRRWYAV LR      +G  EG E  G+K+RKKK +        ++++G+GE    K          EEEE+EEEEE+ GFAYIDL+GN+VY+          ++EGE+EG   G+E    G  +  +A E   G ++  K +G QEEKKE          ++E   +AA A+ +   + T  T  P   KKEIRVVEGFGLAVVE       S+P+S+   ERIGPLPRIN ALTMRGHLLYLYGG++E+GDREY+LDDAWCLDLNKR+EWRC+LPGTMHLQ W+GEDD+TTLG           EEE+EEEEE E+E++ + SE    S
Sbjct:    1 MGKRDKRKKAAAKVGGAGAGKKEEKRKKQEAKSKKKATKGGGGAGEKDKELQEEDIEAILAEIRAKDAAKTAVTISEAPQPSPRTNFSLTTLPSGELLLFGGEYYDGEDTIVYNGVYRWHLERGEWRVIESLNAPPPRCSHQAVCYREHLYVFGGEFGTSDQFYHYRDLWRLDLKSNKWEELPLQKDTPSARSGHRMCLWRHYLVLFGGFYEAFRETRWYNDLFLFNLQDLKWKKIVYSATAPVPTPRSGCQMAVGTDAVYIHGGYSKVKATVTTVFGHSQSSKAEGHVHDDTWALQMKTVPAGGQPYWERVSRKGSAPSPRSGASMISYKTIALSFGGVHDVEGKQHAMTSVFYDDLYQFDMLRRRWYAVALR------QGAGEGREGSGRKRRKKKSE------ESQERSGDGENGGRK---------REEEEKEEEEEDGGFAYIDLEGNIVYV----------SDEGEQEGEEGGME-DEVGPRKAPVAAEEGNGHVDEEKKEGRQEEKKE----------TVEGEPSAAGASEE---SLTCPTCPPPPRKKEIRVVEGFGLAVVE-------SAPASASHHERIGPLPRINAALTMRGHLLYLYGGLFEEGDREYTLDDAWCLDLNKREEWRCILPGTMHLQTWRGEDDETTLG-----------EEEDEEEEEAEDEDDSDNSESTSGS 632

The following BLAST results are available for this feature:

BLAST of NO02G00180.1 vs.

BLAST of NO02G00180.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM30650.1	2.900e-240	68.63	Kelch-type beta propeller [Nannochloropsis gaditan...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO02G00180	NO02G00180	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO02G00180.1	NO02G00180.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO02G00180.1.cds1	NO02G00180.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G00180.1.cds2	NO02G00180.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G00180.1.cds3	NO02G00180.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G00180.1.cds4	NO02G00180.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G00180.1.cds5	NO02G00180.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G00180.1.cds6	NO02G00180.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G00180.1.cds7	NO02G00180.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G00180.1.cds8	NO02G00180.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G00180.1.cds9	NO02G00180.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G00180.1.cds10	NO02G00180.1.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G00180.1.cds11	NO02G00180.1.cds11	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G00180.1.cds12	NO02G00180.1.cds12	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G00180.1.cds13	NO02G00180.1.cds13	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G00180.1.cds14	NO02G00180.1.cds14	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G00180.1.cds15	NO02G00180.1.cds15	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G00180.1.cds16	NO02G00180.1.cds16	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G00180.1.cds17	NO02G00180.1.cds17	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr2:69816..76609+
coding sequence from alignment at chr2:69816..76609+

mRNA sequence

>NO02G00180.1 ID=NO02G00180.1|Name=NO02G00180.1|organism=Nannochloropsis oceanica|type=mRNA|length=4428bp
TTGTGACAAGACTTATTTGTTCGCTTTTGTCATGCGGCATGACAAGCACT
GGTGCAACTCAGGAGGAAAATGTCAATGTGTTTACGTGATTCTTGCCATA
TACATGTACCGGCAGATTTTTTTGGTAGCTGAAACGTGGCCCCAGTAGTT
CATGGGCCCATACATCGCACACACCATTTAAATGCTCATATGCAAGGCTT
TAAGTCAATACGATGCCCTTCACAACCTCTTCCTTTTTCCTCCACACATT
CACAATCGCATACACATGCGCCACTGCGAAGGCATAGTGGCGCTTGGTTT
GAGTTATATGTACCGCCATATGATGGATGTGGATAATGAAGACAACCTCG
TAATCTTCGTGGTCCTTATATACATGCACTTCTTTGACGGTTACCAGCTT
CCCATGCGTCTTGGAATCTAGATCCAAACCGCCCTCGTACATTGCCGCAT
TTTTTTAAGACTTTCCGATGATTTGTTTCTGAAAATGCACCGGTTTACAA
AGGAGCAGATGTGCATGCTCCCCAGACTCCGCATCGACAATGCAAGAATG
CATGAGATTCCTTTGATGCGCTGCGCACGCAATGGTTCATGCATGAAAGG
CTGCCAAACCACACGAGCGGGGCGGAGTGAAGAAGAATGGGATGCTGCTT
TCTGTGTTTCTCCGGTAATTTTATTTTTATTTGTGTGTCCACACACACTT
ACATCACCACGAATCGGTCCACCTGTGTTGCAATCTTGTGATCTGCGGCG
AAGCAAGCATATGAAGAAAGATGGAGCGACAAAAATGGCCATTTTCCCTT
TTTACGGGTATTGTTGCTGTTTGAGAGCTAGGAAGGAAGAGACCTTAATT
CCTACCTGTAGCAGTCAAGGCGCTGACCTGCCCCCCCATAGGCATTCCTT
AGGTAGGACAGGCAAATTCGCTGTTTATGGACTGAAAACCCTTAAATAGC
CTATTTAAGGGTTTTGGGGAGAGTTGAACACCCCCCGGTAATAGTATTTA
ACCTCCTGGTTTCTCAACGGCGAATGGAGATCCAAACTCACTACACACCC
CCAACTCCGCCGCAAACCAACAGGCCATGGGCAAGAGGGACAAGAGAAAG
AAGGCAGCGGCCAAGATCGGGGCGGCGGGCGGGGGTAAGAAGGATGAGAA
GCGAAAGAAGCAAGAGGCCAAATCGCAAAAGAAAGCAACCAAGGGGGGAT
GCGGCGGGGAGAAGGAGAAGGAGCTGCAGGAGGAGGACATAGAGGCTATC
CTAGCTGAGATTCGCGCTAAGGATGCAGCCAAGACAGCTGTGACCATCAC
GGAGTCCCCCCAGCCTTCCCCACGGACAAACTTCTCCCTCACTACGCTGC
CGTCCGGGGAGCTCTTGCTCTTTGGCGGGGAGTACTACGATGGTGAGGAC
ACAACTGTCTATAACGGGGTATTCAGATGGCACCTCGAGCGAGGGGAGTG
GCGTAAGATTGAGAGCCTCAACGCTCCACCACCGCGCTGCTCTCACCAGG
CCGTGTCTTTCAGAGACTACCTCTATATCTTCGGGGGCGAATTCGGCACA
AGCGACCAATTCTATCACTACAGGGATCTCTGGCGTCTCGACCTCAAGAG
CAATCGATGGGAGGAGCTTCCCTCACAGAAAGACACGCCCTCTGCACGCT
CCGGTCACCGAATCTGTGTCTGGCGCCACTACCTTGTCCTATTCGGCGGC
TTCTATGAGGCTTTCCGCGAGACGAAATGGTTCAACGATGTCTTCCTCTT
CAACCTCCAAGACCTCGCCTGGAAGAAAATCATCCTCCCCGCCACCGCCC
CGGCGCCCTCTCCCCGCTCCGGCTGTCAGATGGCCGTAGGCGGAGACGTG
GTTTACATCCACGGTGGCTACTCCAAAGTGAAGCCCACCGTGACGACCAG
GGGTGGCACCCCTCAAAGCAGCAAAGCAGAGGGCTGTGTGCATGATGACA
TGTGGGCCCTACACATGAAGAACGTACCGGCAGGCGGGCAGCCGTTTTGG
GAGCGGGTCTCTCGCAAGGGCACCCCACCTTCTCCTCGCTCGGGCGCCAC
CATGGTCAGCTACAAGACTATCGCCCTCTCCTTCGGCGGGGTCCATGACG
TGGAGAGGAAGCAGCACGCCATATCCTCGCTCTTCTACGACGATCTCTAT
CAGTTCGACATGCTTCGGCGACGCTGGTATGCTGTGGGCCTACGGAACAA
CAGCTGTAGAGGAAGGGGGGGAAAGGAAGGAGGGGAGGAAGAAGGGAAGA
AGAAGAGGAAAAAGAAGGGCGATGGCGGCGGAGGAGGATCGGGGAAGAAG
AAAAAGAATGGAGAGGGCGAGGAAGAGGACGGGAAGGATGAAAAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AAGGATTTGCGTACATTGATCTGGATGGGAATGTGGTTTATATTCGAGGG
GATGAGCTAGAGGCGGAGGAAGAGGCAGAGGAGGGGGAGGAGGAGGGAGG
GAGGGAGGGAGTGGAAGGAGGAGGACGAGGACAAGGGGAGGAAAATTTGG
CGATGGAGGTGGCACCCGGGAAGATGGAAGCGGCGAAAGACGACGGCCAA
GAGGAGAAGAAGGAGCACAAAGCGAAGCTTTCCGCGTCCTCTTCGTCCAT
GGAGGCGGCGGCTGCTGCTGCCGCTGCTGCTAGGAAGACTGCTACTGCTG
CTACTGCTGCTACTGCTGCTCCCATCACTGCGAAGAAAGAAATCCGCGTC
GTTGAGGGCTTTGGACTGGCGGTGGTGGAGACCACCGCCTCCTCCCTCCC
TTCCTCCCCCTCCTCCTCGGGAGGATGGGAGAGGATCGGGCCGTTGCCGC
GGATCAATCCGGCTTTAACCATGCGTGGGCACCTGCTCTACCTCTACGGT
GGCATCTACGAGGACGGAGATAGGGAATACAGCCTCGATGACGCGTGGTG
TCTTGACCTGAATAAACGACAGGAATGGCGTTGCCTCCTGCCGGGGACCA
TGCATTTACAGGTCTGGAAGGGGGAGGATGATGACACCACTTTGGGGGGA
GACTCCGACGATGAGGACGAGGACAGCGACGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGGAGAGGAGAGTGAGGGTGATGGTT
CCTCGTCTTCATCTGGGGAGGAGAATGATGAGGACGCGGAGGAGGTAGGG
GAGGAAGGGGAGGAGGAGCGAGAAGAAACGGAGACGAAACACACGATGAA
GAAAGAGAAAAACAAGAAGGGAGAAAGAAAGGAGAGAAAGGAGAAAGGAG
AAACGAAGAAAAAGAAGGAGAAGAAGGAGAAGAAGGGGGAAGAAGGTGGG
AAAGAGGAGAAAAAGAGGCAGAAGAAGAAGAAGACTCTAAGGGAGGAGAT
CGCGGAGTTGCAGTCTTCTCTTTCCATCGACGACACGAACACCACTCCGC
AGCTCGGCGAGAAACTCCGAGATTTTTTTGCGCGAACCACTGTATACTGG
ACCACCCTGGCCGTGGCGCAGGTGGAGGAAGATGCAACCCGATACCTCGA
GGAGCTCTCTCTCTCCACCTCCGGTCGCCCTGGCTCGTCCTCCGGTTCTT
CCCCCTCTACCATCCCCTTCTCCACGGACGACGACGCCCACGACCCGTCC
TCCCTCCCATCCTCCCTCCCTCCCTCCCGCGCGGGGGTGGCGGGCGTGGA
CTACATCATGCGTGAGAAAGAATACAAAAAGTTGGCGTTTGAGATGGCCT
CGAGACGTTACGAGGAGTTACGGCCCGTCTTGGAGCGGTTGAATGAGCTG
GAGACGGAGCAGGTATAGGAGGAGGGAGGGAGGGAGGGAGGGACAGAGGG
AAGGAGGGACGACCTCGATTCTCACTCTCCCCTTACCTACCCACAAACAC
ACAGAGAGAGATGGAGGAGAAGCTGGCGCAACGCACAGCGGGGAAAGGAG
GAGGTGGAGGTAAAGGGAGCAGGGGAGGGGGAGGGAAGAAAGGGAGATAG
CTCCTCAGGGAAAAACAAGGAAATGAAGGAGTAGGAAAGAGAGGCGTGAA
AAGAAGAGGGGAAGATGGAGGAGGAGGAGGGAAAAAAGAAGAGGAAGAAG
AGGAAAGGTATAGAGCACATCAAAAGCACCCGCATTCAGCAGCCGAATAA
CATGCCGGGAGCCAGCCGTTTGTCTTGAAGGCGGCTCAGAAGAAGATACA
AGAAGAAACCGATCCACCGTGAAGCACTGCTCCACGTATGCCCTGCAGGC
AGCTGCTTCTCTTTTTTCTTTTATCACTTTCTTTCCTTCTTGTTTATGCC
TCTACTATTACTTTCTTTCCTTGTTCTTGACGCCTCTACTTCTTTCCCTT
CTTCGTCTTCCAAAGACCTCACCGCTCCATCGTCCTCGCTTGCTGACCTG
CGTCGCCCGCGCCTCCCCTCCTTGCCCA

protein sequence of NO02G00180.1

>NO02G00180.1-protein ID=NO02G00180.1-protein|Name=NO02G00180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=914bp
MGKRDKRKKAAAKIGAAGGGKKDEKRKKQEAKSQKKATKGGCGGEKEKEL
QEEDIEAILAEIRAKDAAKTAVTITESPQPSPRTNFSLTTLPSGELLLFG
GEYYDGEDTTVYNGVFRWHLERGEWRKIESLNAPPPRCSHQAVSFRDYLY
IFGGEFGTSDQFYHYRDLWRLDLKSNRWEELPSQKDTPSARSGHRICVWR
HYLVLFGGFYEAFRETKWFNDVFLFNLQDLAWKKIILPATAPAPSPRSGC
QMAVGGDVVYIHGGYSKVKPTVTTRGGTPQSSKAEGCVHDDMWALHMKNV
PAGGQPFWERVSRKGTPPSPRSGATMVSYKTIALSFGGVHDVERKQHAIS
SLFYDDLYQFDMLRRRWYAVGLRNNSCRGRGGKEGGEEEGKKKRKKKGDG
GGGGSGKKKKNGEGEEEDGKDEKEEEEEEEEEEEEEEEEEEEGFAYIDLD
GNVVYIRGDELEAEEEAEEGEEEGGREGVEGGGRGQGEENLAMEVAPGKM
EAAKDDGQEEKKEHKAKLSASSSSMEAAAAAAAAARKTATAATAATAAPI
TAKKEIRVVEGFGLAVVETTASSLPSSPSSSGGWERIGPLPRINPALTMR
GHLLYLYGGIYEDGDREYSLDDAWCLDLNKRQEWRCLLPGTMHLQVWKGE
DDDTTLGGDSDDEDEDSDEEEEEEEEEEEEEEEGEESEGDGSSSSSGEEN
DEDAEEVGEEGEEEREETETKHTMKKEKNKKGERKERKEKGETKKKKEKK
EKKGEEGGKEEKKRQKKKKTLREEIAELQSSLSIDDTNTTPQLGEKLRDF
FARTTVYWTTLAVAQVEEDATRYLEELSLSTSGRPGSSSGSSPSTIPFST
DDDAHDPSSLPSSLPPSRAGVAGVDYIMREKEYKKLAFEMASRRYEELRP
VLERLNELETEQV*

mRNA from alignment at chr2:69816..76609+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO02G00180.1 ID=NO02G00180.1|Name=NO02G00180.1|organism=Nannochloropsis oceanica|type=mRNA|length=6794bp|location=Sequence derived from alignment at chr2:69816..76609+ (Nannochloropsis oceanica)
TTGTGACAAGACTTATTTGTTCGCTTTTGTCATGCGGCATGACAAGCACT
GGTGCAACTCAGGAGGAAAATGTCAATGTGTTTACGTGATTCTTGCCATA
TACATGTACCGGCAGATTTTTTTGGTAGCTGAAACGTGGCCCCAGTAGTT
CATGGGCCCATACATCGCACACACCATTTAAATGCTCATATGCAAGGCTT
TAAGTCAATACGATGCCCTTCACAACCTCTTCCTTTTTCCTCCACACATT
CACAATCGCATACACATGCGCCACTGCGAAGGCATAGTGGCGCTTGGTTT
GAGTTATATGTACCGCCATATGATGGATGTGGATAATGAAGACAACCTCG
TAATCTTCGTGGTCCTTATATACATGCACTTCTTTGACGGTTACCAGCTT
CCCATGCGTCTTGGAATCTAGATCCAAACCGCCCTCGTACATTGCCGCAT
TTTTTTAAGACTTTCCGATGATTTGTTTCTGAAAATGCACCGGTTTACAA
AGGAGCAGATGTGCATGCTCCCCAGACTCCGCATCGACAATGCAAGAATG
CATGAGATTCCTTTGATGCGCTGCGCACGCAATGGTTCATGCATGAAAGG
CTGCCAAACCACACGAGCGGGGCGGAGTGAAGAAGAATGGGATGCTGCTT
TCTGTGTTTCTCCGGTAATTTTATTTTTATTTGTGTGTCCACACACACTT
ACATCACCACGAATCGGTCCACCTGTGTTGCAATCTTGTGATCTGCGGCG
AAGCAAGCATATGAAGAAAGATGGAGCGACAAAAATGGCCATTTTCCCTT
TTTACGGGTATTGTTGCTGTTTGAGAGCTAGGAAGGAAGAGACCTTAATT
CCTACCTGTAGCAGTCAAGGCGCTGACCTGCCCCCCCATAGGCATTCCTT
AGGTAGGACAGGCAAATTCGCTGTTTATGGACTGAAAACCCTTAAATAGC
CTATTTAAGGGTTTTGGGGAGAGTTGAACACCCCCCGGTAATAGTATTTA
ACCTCCTGGTTTCTCAACGGCGAATGGAGATCCAAACTCACTACACACCC
CCAACTCCGCCGCAAACCAACAGGCCATGGGCAAGAGGGACAAGAGAAAG
AAGGCAGCGGCCAAGATCGGGGCGGCGGGCGGGGGTAAGAAGGATGAGAA
GCGAAAGAAGCAAGAGGCCAAATCGCAAAAGGTAAGTTGAGGCTCCTGCT
AGGTGGGAGGCAGGCTTCAACGGAGGCACGGGAGCAAGAGTGGGGACTCA
GATGCACGCATGATTTTTATCAATCTTCTACAGAAAGCAACCAAGGGGGG
ATGCGGCGGGGAGAAGGAGAAGGAGCTGCAGGAGGAGGACATAGAGGCTA
TCCTAGCTGAGGTATGGCGGGGAGCAAGTGAAAAGAGGGATGGGAGAGTC
GGAAGAAGAGCGGCACATTTATATGGGTAGCCCATCAACCCCTCCATATA
AATCAATCTAGATTCGCGCTAAGGATGCAGCCAAGACAGCTGTGACCATC
ACGGAGTCCCCCCAGCCTTCCCCACGGACAAACTTCTCCCTCACTACGCT
GCCGTCCGGGGAGCTCTTGCTCTTTGGCGGGGAGTACTACGATGGTGAGG
ACACAACTGTCTATAACGGGGTATTCAGGTATGTGGGATAAAGAGCGGTG
GTTAGCTGCTCGATAATAATGACCCGACAGTCTTTATCGGGGCGTTCTGG
TATGTTTGGGTAGGAAGGGAATGCGGACGAAGGAAAGGTGACGTATCGGG
CCGAAATCCTAAATCTGTCGATTTCAAAACCATTAGATGGCACCTCGAGC
GAGGGGAGTGGCGTAAGATTGAGAGCCTCAACGCTCCACCACCGCGCTGC
TCTCACCAGGTATGCGCCCATTGCCTTCTTCTGTTACCGCGCCCTCTCTT
GATCACTTTCTCTTACCTCTCTTCCTTTTCCCCTCCCTCGTTCCCTCCCT
CTCTCCACAGGCCGTGTCTTTCAGAGACTACCTCTATATCTTCGGGGGCG
AATTCGGCACAAGCGACCAATTCTATCACTACAGGGATCTCTGGCGGTAC
GTTCTTTCCTCCCTCCCTCTCTTCGCCCGTCCCTCCCTCCCTCTTTCCAC
ACTCATCTATCCTCCCTTATCCTCTACCAGTCTCGACCTCAAGAGCAATC
GATGGGAGGAGCTTCCCTCACAGAAAGACACGCCCTCTGCACGCTCCGGT
CACCGAATCTGTGTCTGGCGCCACTACCTTGTCCTATTCGGCGGCTTCTA
TGAGGTGTGAAAGCAGAGAGGGAGGGAGGGAAGGAGGGAGGGAAGGGGGA
GTGTGGATGGTTAAAAAAAAAATGCCGGTATTGACGTCATTCTATGAGGG
AGCCGTTGGAACTACTCACCTCCCACCCTCCCTCCCTCCCTCCCTGCAGG
CTTTCCGCGAGACGAAATGGTTCAACGATGTCTTCCTCTTCAACCTCCAA
GACCTCGCCTGGAAGAAAATCATCCTCCCCGCCACCGCCCCGGTATGTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTTCCT
TTAGCTCACCTCCCAACCCGCTCCTCCCTCCTCATCACGCACACTACCAG
GCGCCCTCTCCCCGCTCCGGCTGTCAGATGGCCGTAGGCGGAGACGTGGT
TTACATCCACGGTGGCTACTCCAAAGTATCTCCCTCCCTCCCTCCCTCCT
TCCCTCCCTCCCTCCCTCCGTCCCTTCCTCTCGCCCTCCTGTGCCTCCGA
TCTCACCCGTGGCCTCCCTCCTTCCCTCCCTCCCTCCCTGCCCCGCCCCC
TGTTGTGTAGGTGAAGCCCACCGTGACGACCAGGGGTGGCACCCCTCAAA
GCAGCAAAGCAGAGGGCTGTGTGCATGATGACATGTGGGCCCTACACATG
AAGAACGTACCGGCAGGCGGGCAGCCGTTTTGGGAGCGGGTAAGAGTGCC
CTGCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTTTACCTTGTCTTCAGTTGTTGATGCTACCCCTCCCTC
CCTCCCTTCCTCCCTCCCTCCCAGGTCTCTCGCAAGGGCACCCCACCTTC
TCCTCGCTCGGGCGCCACCATGGTCAGCTACAAGACTATCGCCCTCTCCT
TCGGCGGGGTCCATGTAAGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCCTC
CCTCCCTCCCTCTCTCCCTCCCTCCCCCGTCCCTTCTCTTTCTCTTCTTG
CGTGTATTGAGCCCCCCTTGGCTTCCTCCCTCTTTCCTCATCCCCCCCCT
TCCTTTGCTATTTCCTCAAACACCCGCGCATCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTTCGCCCAGGACGTGGAGAGGAAGCA
GCACGCCATATCCTCGCTCTTCTACGACGATCTCTATCAGTTCGACATGC
TTCGGCGACGCTGGTAAGCCCTCTCCCTCCCTCCCTCCCTCCCTCACCCT
ATCCCCTCTGTCCTCCAAGTAGGTAACCCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCACCCTTCTCCCTCTGCCCTGTTTCCTT
GTCGTTCAGGTATGCTGTGGGCCTACGGAACAACAGCTGTAGAGGAAGGG
GGGGAAAGGAAGGAGGGGAGGAAGAAGGGAAGAAGAAGAGGAAAAAGAAG
GGCGATGGCGGCGGAGGAGGATCGGGGAAGAAGAAAAAGAATGGAGAGGG
CGAGGAAGAGGACGGGAAGGATGAAAAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGGATTTGCGTACATT
GATCTGGATGGGAATGTGGTTTATATTCGAGGGGATGAGCTAGAGGCGGA
GGAAGAGGCAGAGGAGGGGGAGGAGGAGGGAGGGAGGGAGGGAGTGGAAG
GAGGAGGACGAGGACAAGGGGAGGAAAATTTGGCGATGGAGGTGGCACCC
GGGAAGATGGAAGCGGCGAAAGACGACGGCCAAGAGGAGAAGAAGGAGCA
CAAAGCGAAGGTACGAGAAACACACCACGCAGGAAGATGGCAGGGCCTAG
GGGCATCAGGTACTCACCGCCCTTCCCTCTCTCCCTCCCTCTTTCCTTCC
ATCCTTTTCTTCTGCCCGTCTTCACAGCTTTCCGCGTCCTCTTCGTCCAT
GGAGGCGGCGGCTGCTGCTGCCGCTGCTGCTAGGAAGACTGCTACTGCTG
CTACTGCTGCTACTGCTGCTCCCATCACTGCGAAGAAAGAAATCCGCGTC
GTTGAGGGCTTTGGACTGGCGGTGGTGGAGACCACCGCCTCCTCCCTCCC
TTCCTCCCCCTCCTCCTCGGGAGGATGGGAGAGGATCGGGCCGTTGCCGC
GGATCAATCCGGCTTTAACCATGCGTGGGCACCTGGTCTGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGAAAGGGAAGGGAAGGGAAGGAAGGAGAGGAAG
AGAGAGAGGGAGGGGGGGAGCGGGGGAGGGAAGATGTTTATCGGCACTTG
AGGAGATGACGTGGGACTCTTGTGGATGGTTGATGCCATTGCCTCTTCGG
CCTTCACCTCCCTTCCCTCCTCATCACCTCTGCCTGTTCGACTGCATCCG
AGGCCTCTGACTATGACCCTCTCGTGGCTTGATCCCTCCCTCCCTCCCTT
CCTCCCTTCCTCCTCAGCTCTACCTCTACGGTGGCATCTACGAGGACGGA
GATAGGGAATACAGCCTCGATGACGCGTGGTGTCTTGACCTGAATAAACG
ACAGGAATGGCGTTGCCTCCTGCCGGGGACCATGCATTTACAGGTGTACC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTTCCCTTCCTCC
TTCACGCCTTCCTCCTTTCACACACAAGTCTTTCTTCGCTCCGCGCGTGG
CCCTCTATCATTGTCTCACTTCCTTCCCCTTTGCTCTCCTCCCTTCTTCC
CTCCATCCTTCCCTCCCTCCTTTCCTCCCTCCCTCCCTCCCCTCCCTCCT
AGGTCTGGAAGGGGGAGGATGATGACACCACTTTGGGGGGAGACTCCGAC
GATGAGGACGAGGACAGCGACGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGGAGAGGAGAGTGAGGGTGATGGTTCCTCGTCTT
CATCTGGGGAGGAGAATGATGAGGACGCGGAGGAGGTAGGGGAGGAAGGG
GAGGAGGAGCGAGAAGAAACGGAGACGAAACACACGATGAAGAAAGAGAA
AAACAAGAAGGGAGAAAGAAAGGAGAGAAAGGAGAAAGGAGAAACGAAGA
AAAAGAAGGAGAAGAAGGAGAAGAAGGGGGAAGAAGGTGGGAAAGAGGAG
AAAAAGAGGCAGAAGAAGAAGAAGACTCTAAGGGAGGAGATCGCGGAGTT
GCAGTCTTCTCTTTCCATCGACGACACGAACACCACTCCGCAGGTAATAT
TCCAGGACGCTGCTCCTCCCTCCCTTCCTTCCTCCCTCCCTCCCTCCCTC
CCTCCCTCTCTAAATTCGGTGTTCATATTATAAAAGCAAGCCCTCACCTT
TTTCTTCCCTCCTTTCCTCCTCTTCCTCCTTTCCTCCCTCCCTCCCTCCC
CTCCCTCGTTTCCCAGCTCGGCGAGAAACTCCGAGATTTTTTTGCGCGAA
CCACTGTATACTGGACCACCCTGGCCGTGGCGCAGGTGGAGGAAGATGCA
ACCCGATACCTGTAAGAAGGGAGGGAGGGAGGGAGGGAGGGAAGGACACA
ATGGAATGAATGCTGATTTTCTCTTTTTTCCCTCTTTCCTGATCTATTCA
TTCGCTGAAAAAGCGAGGAGCTCTCTCTCTCCACCTCCGGTCGCCCTGGC
TCGTCCTCCGGTTCTTCCCCCTCTACCATCCCCTTCTCCACGGACGACGA
CGCCCACGACCCGTCCTCCCTCCCATCCTCCCTCCCTCCCTCCCGCGCGG
GGGTGGCGGGCGTGGACTACATCATGCGTGAGAAAGAATACAAAAAGTTG
GCGTTTGAGATGGCCTCGAGACGTTACGAGGAGTTACGGCCCGTCTTGGA
GCGGTTGAATGAGCTGGAGACGGAGCAGGTATAGGAGGAGGGAGGGAGGG
AGGGAGGGACAGAGGGAAGGAGGGACGACCTCGATTCTCACTCTCCCCTT
ACCTACCCACAAACACACAGAGAGAGATGGAGGAGAAGCTGGCGCAACGC
ACAGCGGGGAAAGGAGGAGGTGGAGGTAAAGGGAGCAGGGGAGGGGGAGG
GAAGAAAGGGAGATAGCTCCTCAGGGAAAAACAAGGAAATGAAGGAGTAG
GAAAGAGAGGCGTGAAAAGAAGAGGGGAAGATGGAGGAGGAGGAGGGAAA
AAAGAAGAGGAAGAAGAGGAAAGGTATAGAGCACATCAAAAGCACCCGCA
TTCAGCAGCCGAATAACATGCCGGGAGCCAGCCGTTTGTCTTGAAGGCGG
CTCAGAAGAAGATACAAGAAGAAACCGATCCACCGTGAAGCACTGCTCCA
CGTATGCCCTGCAGGCAGCTGCTTCTCTTTTTTCTTTTATCACTTTCTTT
CCTTCTTGTTTATGCCTCTACTATTACTTTCTTTCCTTGTTCTTGACGCC
TCTACTTCTTTCCCTTCTTCGTCTTCCAAAGACCTCACCGCTCCATCGTC
CTCGCTTGCTGACCTGCGTCGCCCGCGCCTCCCCTCCTTGCCCA

Coding sequence (CDS) from alignment at chr2:69816..76609+

>NO02G00180.1 ID=NO02G00180.1|Name=NO02G00180.1|organism=Nannochloropsis oceanica|type=CDS|length=2742bp|location=Sequence derived from alignment at chr2:69816..76609+ (Nannochloropsis oceanica)
ATGGGCAAGAGGGACAAGAGAAAGAAGGCAGCGGCCAAGATCGGGGCGGC
GGGCGGGGGTAAGAAGGATGAGAAGCGAAAGAAGCAAGAGGCCAAATCGC
AAAAGAAAGCAACCAAGGGGGGATGCGGCGGGGAGAAGGAGAAGGAGCTG
CAGGAGGAGGACATAGAGGCTATCCTAGCTGAGATTCGCGCTAAGGATGC
AGCCAAGACAGCTGTGACCATCACGGAGTCCCCCCAGCCTTCCCCACGGA
CAAACTTCTCCCTCACTACGCTGCCGTCCGGGGAGCTCTTGCTCTTTGGC
GGGGAGTACTACGATGGTGAGGACACAACTGTCTATAACGGGGTATTCAG
ATGGCACCTCGAGCGAGGGGAGTGGCGTAAGATTGAGAGCCTCAACGCTC
CACCACCGCGCTGCTCTCACCAGGCCGTGTCTTTCAGAGACTACCTCTAT
ATCTTCGGGGGCGAATTCGGCACAAGCGACCAATTCTATCACTACAGGGA
TCTCTGGCGTCTCGACCTCAAGAGCAATCGATGGGAGGAGCTTCCCTCAC
AGAAAGACACGCCCTCTGCACGCTCCGGTCACCGAATCTGTGTCTGGCGC
CACTACCTTGTCCTATTCGGCGGCTTCTATGAGGCTTTCCGCGAGACGAA
ATGGTTCAACGATGTCTTCCTCTTCAACCTCCAAGACCTCGCCTGGAAGA
AAATCATCCTCCCCGCCACCGCCCCGGCGCCCTCTCCCCGCTCCGGCTGT
CAGATGGCCGTAGGCGGAGACGTGGTTTACATCCACGGTGGCTACTCCAA
AGTGAAGCCCACCGTGACGACCAGGGGTGGCACCCCTCAAAGCAGCAAAG
CAGAGGGCTGTGTGCATGATGACATGTGGGCCCTACACATGAAGAACGTA
CCGGCAGGCGGGCAGCCGTTTTGGGAGCGGGTCTCTCGCAAGGGCACCCC
ACCTTCTCCTCGCTCGGGCGCCACCATGGTCAGCTACAAGACTATCGCCC
TCTCCTTCGGCGGGGTCCATGACGTGGAGAGGAAGCAGCACGCCATATCC
TCGCTCTTCTACGACGATCTCTATCAGTTCGACATGCTTCGGCGACGCTG
GTATGCTGTGGGCCTACGGAACAACAGCTGTAGAGGAAGGGGGGGAAAGG
AAGGAGGGGAGGAAGAAGGGAAGAAGAAGAGGAAAAAGAAGGGCGATGGC
GGCGGAGGAGGATCGGGGAAGAAGAAAAAGAATGGAGAGGGCGAGGAAGA
GGACGGGAAGGATGAAAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAAGGATTTGCGTACATTGATCTGGAT
GGGAATGTGGTTTATATTCGAGGGGATGAGCTAGAGGCGGAGGAAGAGGC
AGAGGAGGGGGAGGAGGAGGGAGGGAGGGAGGGAGTGGAAGGAGGAGGAC
GAGGACAAGGGGAGGAAAATTTGGCGATGGAGGTGGCACCCGGGAAGATG
GAAGCGGCGAAAGACGACGGCCAAGAGGAGAAGAAGGAGCACAAAGCGAA
GCTTTCCGCGTCCTCTTCGTCCATGGAGGCGGCGGCTGCTGCTGCCGCTG
CTGCTAGGAAGACTGCTACTGCTGCTACTGCTGCTACTGCTGCTCCCATC
ACTGCGAAGAAAGAAATCCGCGTCGTTGAGGGCTTTGGACTGGCGGTGGT
GGAGACCACCGCCTCCTCCCTCCCTTCCTCCCCCTCCTCCTCGGGAGGAT
GGGAGAGGATCGGGCCGTTGCCGCGGATCAATCCGGCTTTAACCATGCGT
GGGCACCTGCTCTACCTCTACGGTGGCATCTACGAGGACGGAGATAGGGA
ATACAGCCTCGATGACGCGTGGTGTCTTGACCTGAATAAACGACAGGAAT
GGCGTTGCCTCCTGCCGGGGACCATGCATTTACAGGTCTGGAAGGGGGAG
GATGATGACACCACTTTGGGGGGAGACTCCGACGATGAGGACGAGGACAG
CGACGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
GAGAGGAGAGTGAGGGTGATGGTTCCTCGTCTTCATCTGGGGAGGAGAAT
GATGAGGACGCGGAGGAGGTAGGGGAGGAAGGGGAGGAGGAGCGAGAAGA
AACGGAGACGAAACACACGATGAAGAAAGAGAAAAACAAGAAGGGAGAAA
GAAAGGAGAGAAAGGAGAAAGGAGAAACGAAGAAAAAGAAGGAGAAGAAG
GAGAAGAAGGGGGAAGAAGGTGGGAAAGAGGAGAAAAAGAGGCAGAAGAA
GAAGAAGACTCTAAGGGAGGAGATCGCGGAGTTGCAGTCTTCTCTTTCCA
TCGACGACACGAACACCACTCCGCAGCTCGGCGAGAAACTCCGAGATTTT
TTTGCGCGAACCACTGTATACTGGACCACCCTGGCCGTGGCGCAGGTGGA
GGAAGATGCAACCCGATACCTCGAGGAGCTCTCTCTCTCCACCTCCGGTC
GCCCTGGCTCGTCCTCCGGTTCTTCCCCCTCTACCATCCCCTTCTCCACG
GACGACGACGCCCACGACCCGTCCTCCCTCCCATCCTCCCTCCCTCCCTC
CCGCGCGGGGGTGGCGGGCGTGGACTACATCATGCGTGAGAAAGAATACA
AAAAGTTGGCGTTTGAGATGGCCTCGAGACGTTACGAGGAGTTACGGCCC
GTCTTGGAGCGGTTGAATGAGCTGGAGACGGAGCAGGTATAG

Synonyms

Publications