NO02G00150.1, NO02G00150.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G00150.1
Unique NameNO02G00150.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2268
Alignment locationchr2:57701..61325 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:57701..61325 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G00150.1 vs.
Match: EWM30651.1 (hypothetical protein Naga_100242g3 [Nannochloropsis gaditana])

HSP 1 Score: 84.0 bits (206), Expect = 1.300e-12
Identity = 94/232 (40.52%), Postives = 114/232 (49.14%), Query Frame = 0 
Query:   58 RGVHQDTSSALAALSSAAAIHKNHLSKHSSASNDHDALSSSSSSSSSSSSSSSSSSSSSPSSPILSKENNPLEFPSSSVSHKASLESLLQPTEQDLPQRRAHKRSSRSLLSTPNQHLHTAVTPAVHPETSGARRAFMLP-----LPGLGRSNSTNSVLSAHRGR-------HNNGSSYVFPPSLPPSLPKPTAGGTDEWRRSLTIEERMEVRKRLRAAYLSQTKEGDLEGLL 278
            RGV +D S ALAALSSAAAIHK+H SK S          + SSSSS+S      + SS P+ P                           P +Q+    +   R +    STP   L T+  P   P      +A  LP     LP L R  S++SV S    R        N+ S+Y FPPSL PSL K  +G  DEWRR LTIEERMEVR RL+ AYL   +EGD+EGLL
Sbjct:    8 RGV-RDASCALAALSSAAAIHKHHHSKRSPVHTPRAL--TPSSSSSASGEGKGFAPSSQPARP--------------------------SPRQQEGGHAKKEGRFTSG--STPGTILPTSQPPPPSPTHPSDNQASSLPTRLPLLPALTREGSSDSVRSDSGPRLPPTLALQNSSSAYPFPPSLLPSLSK-ASGAADEWRRRLTIEERMEVRGRLKTAYLHHVQEGDVEGLL 207
The following BLAST results are available for this feature:
BLAST of NO02G00150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30651.11.300e-1240.52hypothetical protein Naga_100242g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G00150NO02G00150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G00150.1NO02G00150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G00150.1.cds1NO02G00150.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00150.1.cds2NO02G00150.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00150.1.cds3NO02G00150.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00150.1.cds4NO02G00150.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00150.1.cds5NO02G00150.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00150.1.cds6NO02G00150.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00150.1.cds7NO02G00150.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00150.1.cds8NO02G00150.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G00150.1 ID=NO02G00150.1|Name=NO02G00150.1|organism=Nannochloropsis oceanica|type=mRNA|length=2268bp
CTCCTCTCTGCTGAGGAAAATTCTGTTCGGAAATCGACACGGCTTCTACA
CACATTTGTTTCGTCTGACATCCACCCACATGATACACCGGCAGTCGTAC
CTTTCTTGTCTCCTAGAAACAGTCGGTCTTTGGTGCTGGCAGTGGGGGCT
TATGGTTTCTTCTTCAGGTGCACACTACTCAACCCCACTTCTTGTACCAC
AACCCAACGAGATGTTTTATCATTCTCTCCCACCAGAAGAACTGGCGCAA
GTCATGCAACTCAGCAGCAAGAAAGCAGTGCCAAAACACTGGGAACCAGG
GCGCCGGGGCGGAGGAAAGGAGGGACGTGCGCTTCATATTCCGCTACTGC
TTGCTTGCCTTTATACAGAGACCACGGACATTTGTCCCAAACGATCCCTC
TACATCCCTATTCATCTCAGCATATGCCTCACTCCCTCCCTCTGAAGACA
GGTCTTACGCAGTCTATCAAGGCAGTGAAAGGAAGGAACAAGAGGCGACT
CACGAGTCAAGCAACTTCTTGGGCGGCCATTGTTGGGGCGAGAGGATTCA
GAATACAGCAAGCCAACGCCATCATGCCCACAGCCGTCTCTACACGCGGA
GTGCACCAGGACACCTCCTCGGCCCTTGCTGCCTTGTCCAGCGCTGCCGC
CATTCACAAGAATCATCTCAGCAAGCATTCCTCCGCTTCCAACGACCATG
ACGCCCTCTCCTCCTCCTCGTCGTCGTCGTCGTCGTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCCCATCTTCTCCGATCTTGAGCAAAGAAAA
TAATCCCCTTGAATTCCCTTCATCGTCCGTATCGCATAAGGCCTCACTGG
AGTCGCTTCTGCAGCCGACGGAGCAAGACCTGCCACAGCGGAGGGCGCAC
AAGCGGTCATCGAGGTCCCTCCTCTCCACGCCCAATCAGCACCTCCACAC
CGCCGTAACACCTGCCGTGCATCCCGAGACGTCCGGCGCTCGGAGGGCCT
TCATGCTGCCCCTCCCGGGCTTGGGCCGATCCAACTCCACCAATAGTGTG
CTTAGTGCACATAGAGGACGGCACAACAACGGCAGCTCCTACGTCTTCCC
TCCCTCCCTTCCTCCCTCCCTTCCTAAGCCCACCGCGGGTGGCACCGATG
AGTGGCGTCGGTCCCTGACCATCGAAGAAAGGATGGAGGTGAGGAAGCGA
CTGAGGGCGGCTTATCTCAGCCAGACCAAGGAAGGGGACCTGGAGGGCTT
GCTCGCGGCGATGGAAGAGGATTTTCTGCGCCTGAATGCCCCCTCTCGAC
TCGATTACATCAAGGTCTCGCTGCAGTACGACAAGAAGCTGAGTGAGAAG
CAAAGGCAGCTCCGAGGAGAGATGGACAGAATCTTTCTCCCCTCGTTCTC
CTCCTCCTCATCCTCCTCCTCCTCCACTTCCTCCTCCTCCGCCTCCTCTT
CTTCCCCCACTGCTTGCTTGTCCTCCACCACGAAAGAGAAGGAAGAGGAG
GAGGAGGAGGAGGAGGAGGAGGGGGGGATGATAGCACGAGGAGAGGGAGG
AGGAGGAGGAGGTGAAGAAAGAGGGGGAAGAGAACCCGCTGCGACGTCGG
CGCAGCCAACGGAAGCAGAGGCTGAAGTGAGAAGAAGAAGAAGAAGAGGA
GGAGGAGGAGGAGGAGGGGGAGGAGGAAAAGGAACGAGTCGTAAAAGAGT
GAAGAATTAACGCAGGCAGGGAGGGAGAGAGGGAGAGAAGGCATGTACAT
ATACATGTATATGGAGGGTGGGAGGGGGAAGAGAGTCACGAAACAGTAAA
TAAAAGGAAATCGGAGGGTCGAGAGGGGCAGACATTCGTTTACCAGGACG
GAGAGAGGGAGGAAGAGAGAAAGAGGGAGAGAGAACGAGGGAGGGAGGGA
GGGAAGAAGAGAAGGATGCTATCAGGGAGATGAGGAGAAAGGCGGCACCG
GAGAGAGGGAGAAGGCGAATGTGAAGGAGGGGTGGAGGAAGAGGAGAGGG
AGGAGGAAGTTGATATACGAGAATCAAGCCCTCTCTTGAGCAAGCAAACC
GACGATGAGGTCGTGGGGAGCCATGTGAAGGAGTAGAAGCAGCAGCAGCA
GTCGCAGCAGCAACAAGGGCAATATCTCATTATCCAGCGATGGTGGAGTA
AAAAATAAAAAAGGAAGAAGTACAAAAGGAGAAAAAACAAGGTGGGAAGG
AGGGGGGGAAATGAGGCGCGAAAGCTTTCTTTCTGTTCCAGCCAGGAAAG
TGACGAAGCCATTCCCCT
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protein sequence of NO02G00150.1

>NO02G00150.1-protein ID=NO02G00150.1-protein|Name=NO02G00150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=429bp
MPHSLPLKTGLTQSIKAVKGRNKRRLTSQATSWAAIVGARGFRIQQANAI
MPTAVSTRGVHQDTSSALAALSSAAAIHKNHLSKHSSASNDHDALSSSSS
SSSSSSSSSSSSSSSSPSSPILSKENNPLEFPSSSVSHKASLESLLQPTE
QDLPQRRAHKRSSRSLLSTPNQHLHTAVTPAVHPETSGARRAFMLPLPGL
GRSNSTNSVLSAHRGRHNNGSSYVFPPSLPPSLPKPTAGGTDEWRRSLTI
EERMEVRKRLRAAYLSQTKEGDLEGLLAAMEEDFLRLNAPSRLDYIKVSL
QYDKKLSEKQRQLRGEMDRIFLPSFSSSSSSSSSTSSSSASSSSPTACLS
STTKEKEEEEEEEEEEGGMIARGEGGGGGGEERGGREPAATSAQPTEAEA
EVRRRRRRGGGGGGGGGGKGTSRKRVKN*
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mRNA from alignment at chr2:57701..61325+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G00150.1 ID=NO02G00150.1|Name=NO02G00150.1|organism=Nannochloropsis oceanica|type=mRNA|length=3625bp|location=Sequence derived from alignment at chr2:57701..61325+ (Nannochloropsis oceanica)
CTCCTCTCTGCTGAGGAAAATTCTGTTCGGAAATCGACACGGCTTCTACA
CACATTTGTTTCGTCTGACATCCACCCACATGATACACCGGCAGTCGTAC
CTTTCTTGTCTCCTAGAAACAGTCGGTCTTTGGTGCTGGCAGTGGGGGCT
TATGGTTTCTTCTTCAGGTGCACACTACTCAACCCCACTTCTTGTACCAC
AACCCAACGAGATGTTTTATCATTCTCTCCCACCAGAAGAACTGGCGCAA
GTCATGCAACTCAGCAGCAAGAAAGCAGTGCCAAAACACTGGGAACCAGG
GCGCCGGGGCGGAGGAAAGGAGGGACGTGCGCTTCATATTCCGCTACTGC
TTGCTTGCCTTTATACAGAGACCACGGACATTTGTCCCAAACGATCCCTC
TACATCCCTATTCATCTCAGCATATGCCTCACTCCCTCCCTCTGAAGACA
GGTCTTACGCAGTCTATCAAGGCAGTGAAAGGAAGGAACAAGAGGCGACT
CACGAGTCAAGCAACTTCTTGGGCGGCCATTGTTGGGGCGAGAGGATTCA
GAATACAGCAAGCCAACGCCATCATGCCCACAGCCGTCTCTACACGCGGA
GTGCACGTACGTTAGGAGAAGGGGAGAATGAATAAGGGAGGGATGGGGGG
AAGGGAGGTCGAGCGGGACATGGCCAAGGTGTTGGATTCTTCTGTCTTTG
GGGGACACTAAAGTCAGGCACATACCTGAGTGAGAAAGAAGAGGATGAGA
CAGGTCACCCTCATTCACATTTTGACCCCATGACGACAAATAGCAGGACA
CCTCCTCGGCCCTTGCTGCCTTGTCCAGCGCTGCCGCCATTCACAAGAAT
CATCTCAGCAAGGTTGGGAGGGAGGGAGCGATGGAGGGAGGGAGAAAGGC
GATGGGGATGGAGAGGGAGAGCTCTTCATCGAATGAGATAGGCGTATATT
GACCGTCTATGATCGTCGAGGCCGACGCTTCCTCATGTAAATATCTCATT
CTCCACTCTCTTTTCTCTTCATTATCCTCTTCCTTATTGATTTACAGCAT
TCCTCCGCTTCCAACGACCATGACGCCCTCTCCTCCTCCTCGTCGTCGTC
GTCGTCGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCATCTT
CTCCGATCTTGAGCAAAGAAAATAATCCCCTTGAATTCCCTTCATCGTCC
GTATCGCATAAGGCCTCACTGGAGTCGCTTCTGCAGCCGACGGAGCAAGA
CCTGCCACAGCGGAGGGCGCACAAGCGGTAGGGAGGGAGGGAGGGAGGGA
AGGAGGGAAGGAAGGAGGAAGGGAAGGAGGAAAGGGAGGAAGGAGTTGCT
TGAGAATGTAAGGAATTTTGGAAAACTAATCTCGAGACTGTGATGAAGGG
ATCTATCAGAACAAGAAAGATTCACCCCTTCTTCCCTCTCTCCCCCCCAT
GGCATCCAACCCAGGTCATCGAGGTCCCTCCTCTCCACGCCCAATCAGCA
CCTCCACACCGCCGTAACACCTGCCGTGCATCCCGAGAGTACGTACATCT
GCTAGAAGCCCGCCCGCCCTCCCTCCCTCCCTGGAGATTATTCTCGACCC
TACCATACTCCCTCCCACGGCCCCCTCCTCCCTCCCTTCCTCCTTCCCCT
CTTGCCTTGTCCCTCCTTCCGTCCCCCCCTTGCCCGAAACGACTCCTCGT
ATCTTACCTTCCCTCCCTCCCCCCCTCCCTCCCTTTCTCCCTCCCTTTCT
CCCTCCAGCGTCCGGCGCTCGGAGGGCCTTCATGCTGCCCCTCCCGGGCT
TGGGCCGATCCAACTCCACCAATAGTGTGCTTAGTGCACATAGAGGACGG
TAGGGAGGATGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGCGA
GGGTCTGGCGGGAGAAGATTGTAAAAGCAACGCCTCGATGGGAGCGAGAG
GACCAAAGTCATGTTTGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCGTTTCCTTCTGCTCTCCATCCCTCTCTTCTTCC
CTTCCATTCACATCCTCCCCCCCTACCTCTCCAGGCACAACAACGGCAGC
TCCTACGTCTTCCCTCCCTCCCTTCCTCCCTCCCTTCCTAAGCCCACCGC
GGGTGGCACCGATGAGTGGCGTCGGTCCCTGACCATCGAAGAAAGGATGG
AGGTGAGGAAGCGACTGAGGGCGGCTTATCTCAGCCAGACCAAGGAAGGG
GACCTGGAGGGCTTGCTCGCGGTAGGGAGGGAGGGAGGGAGGGAGGGAAA
GGGGATGGAAAATAGAAGATCTCTCAAAAGAGTTAAAGAGCTGTAGCATT
CGTTCGCTCCTTGTCACGTTCATTCGCAGATTTTCATCAAAGACCCTTCA
CAACCCTCCCCTCCTCCCTCCCTCCCTCCCTCACTTCCTCGCTCTCTCCC
CCTGTAGCTGGTGTAGGCGATGGAAGAGGATTTTCTGCGCCTGAATGCCC
CCTCTCGACTCGATTACATCAAGGTCTCGCTGCAGGTAGGTAGGTAGGGA
GGGAGGTAGGGAGGGAGGAGTGAGGAGGGAGGAGTGAGGAGTGAGGAAAA
AGGAACGGCAGCTACCCATACTGTTACTTATGCCATTCCTTTCCCCCTCC
CCCCCTCCCTCCCTCCCTCCCTCGCTACTCCAGTACGACAAGAAGCTGAG
TGAGAAGCAAAGGCAGCTCCGAGGAGAGATGGACAGAATCTTTCTCCCCT
CGTTCTCCTCCTCCTCATCCTCCTCCTCCTCCACTTCCTCCTCCTCCGCC
TCCTCTTCTTCCCCCACTGCTTGCTTGTCCTCCACCACGAAAGAGAAGGA
AGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGGGATGATAGCACGAGGAG
AGGGAGGAGGAGGAGGAGGTGAAGAAAGAGGGGGAAGAGAACCCGCTGCG
ACGTCGGCGCAGCCAACGGAAGCAGAGGCTGAAGTGAGAAGAAGAAGAAG
AAGAGGAGGAGGAGGAGGAGGAGGGGGAGGAGGAAAAGGAACGAGTCGTA
AAAGAGTGAAGAATTAACGCAGGCAGGGAGGGAGAGAGGGAGAGAAGGCA
TGTACATATACATGTATATGGAGGGTGGGAGGGGGAAGAGAGTCACGAAA
CAGTAAATAAAAGGAAATCGGAGGGTCGAGAGGGGCAGACATTCGTTTAC
CAGGACGGAGAGAGGGAGGAAGAGAGAAAGAGGGAGAGAGAACGAGGGAG
GGAGGGAGGGAAGAAGAGAAGGATGCTATCAGGGAGATGAGGAGAAAGGC
GGCACCGGAGAGAGGGAGAAGGCGAATGTGAAGGAGGGGTGGAGGAAGAG
GAGAGGGAGGAGGAAGTTGATATACGAGAATCAAGCCCTCTCTTGAGCAA
GCAAACCGACGATGAGGTCGTGGGGAGCCATGTGAAGGAGTAGAAGCAGC
AGCAGCAGTCGCAGCAGCAACAAGGGCAATATCTCATTATCCAGCGATGG
TGGAGTAAAAAATAAAAAAGGAAGAAGTACAAAAGGAGAAAAAACAAGGT
GGGAAGGAGGGGGGGAAATGAGGCGCGAAAGCTTTCTTTCTGTTCCAGCC
AGGAAAGTGACGAAGCCATTCCCCT
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Coding sequence (CDS) from alignment at chr2:57701..61325+

>NO02G00150.1 ID=NO02G00150.1|Name=NO02G00150.1|organism=Nannochloropsis oceanica|type=CDS|length=1287bp|location=Sequence derived from alignment at chr2:57701..61325+ (Nannochloropsis oceanica)
ATGCCTCACTCCCTCCCTCTGAAGACAGGTCTTACGCAGTCTATCAAGGC
AGTGAAAGGAAGGAACAAGAGGCGACTCACGAGTCAAGCAACTTCTTGGG
CGGCCATTGTTGGGGCGAGAGGATTCAGAATACAGCAAGCCAACGCCATC
ATGCCCACAGCCGTCTCTACACGCGGAGTGCACCAGGACACCTCCTCGGC
CCTTGCTGCCTTGTCCAGCGCTGCCGCCATTCACAAGAATCATCTCAGCA
AGCATTCCTCCGCTTCCAACGACCATGACGCCCTCTCCTCCTCCTCGTCG
TCGTCGTCGTCGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCC
ATCTTCTCCGATCTTGAGCAAAGAAAATAATCCCCTTGAATTCCCTTCAT
CGTCCGTATCGCATAAGGCCTCACTGGAGTCGCTTCTGCAGCCGACGGAG
CAAGACCTGCCACAGCGGAGGGCGCACAAGCGGTCATCGAGGTCCCTCCT
CTCCACGCCCAATCAGCACCTCCACACCGCCGTAACACCTGCCGTGCATC
CCGAGACGTCCGGCGCTCGGAGGGCCTTCATGCTGCCCCTCCCGGGCTTG
GGCCGATCCAACTCCACCAATAGTGTGCTTAGTGCACATAGAGGACGGCA
CAACAACGGCAGCTCCTACGTCTTCCCTCCCTCCCTTCCTCCCTCCCTTC
CTAAGCCCACCGCGGGTGGCACCGATGAGTGGCGTCGGTCCCTGACCATC
GAAGAAAGGATGGAGGTGAGGAAGCGACTGAGGGCGGCTTATCTCAGCCA
GACCAAGGAAGGGGACCTGGAGGGCTTGCTCGCGGCGATGGAAGAGGATT
TTCTGCGCCTGAATGCCCCCTCTCGACTCGATTACATCAAGGTCTCGCTG
CAGTACGACAAGAAGCTGAGTGAGAAGCAAAGGCAGCTCCGAGGAGAGAT
GGACAGAATCTTTCTCCCCTCGTTCTCCTCCTCCTCATCCTCCTCCTCCT
CCACTTCCTCCTCCTCCGCCTCCTCTTCTTCCCCCACTGCTTGCTTGTCC
TCCACCACGAAAGAGAAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGG
GGGGATGATAGCACGAGGAGAGGGAGGAGGAGGAGGAGGTGAAGAAAGAG
GGGGAAGAGAACCCGCTGCGACGTCGGCGCAGCCAACGGAAGCAGAGGCT
GAAGTGAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGGGGAGG
AGGAAAAGGAACGAGTCGTAAAAGAGTGAAGAATTAA
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Synonyms
Publications