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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:57701..61325 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G00150.1 vs.
Match: EWM30651.1 (hypothetical protein Naga_100242g3 [Nannochloropsis gaditana]) HSP 1 Score: 84.0 bits (206), Expect = 1.300e-12 Identity = 94/232 (40.52%), Postives = 114/232 (49.14%), Query Frame = 0
Query: 58 RGVHQDTSSALAALSSAAAIHKNHLSKHSSASNDHDALSSSSSSSSSSSSSSSSSSSSSPSSPILSKENNPLEFPSSSVSHKASLESLLQPTEQDLPQRRAHKRSSRSLLSTPNQHLHTAVTPAVHPETSGARRAFMLP-----LPGLGRSNSTNSVLSAHRGR-------HNNGSSYVFPPSLPPSLPKPTAGGTDEWRRSLTIEERMEVRKRLRAAYLSQTKEGDLEGLL 278
RGV +D S ALAALSSAAAIHK+H SK S + SSSSS+S + SS P+ P P +Q+ + R + STP L T+ P P +A LP LP L R S++SV S R N+ S+Y FPPSL PSL K +G DEWRR LTIEERMEVR RL+ AYL +EGD+EGLL
Sbjct: 8 RGV-RDASCALAALSSAAAIHKHHHSKRSPVHTPRAL--TPSSSSSASGEGKGFAPSSQPARP--------------------------SPRQQEGGHAKKEGRFTSG--STPGTILPTSQPPPPSPTHPSDNQASSLPTRLPLLPALTREGSSDSVRSDSGPRLPPTLALQNSSSAYPFPPSLLPSLSK-ASGAADEWRRRLTIEERMEVRGRLKTAYLHHVQEGDVEGLL 207
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G00150.1 ID=NO02G00150.1|Name=NO02G00150.1|organism=Nannochloropsis oceanica|type=mRNA|length=2268bp CTCCTCTCTGCTGAGGAAAATTCTGTTCGGAAATCGACACGGCTTCTACA CACATTTGTTTCGTCTGACATCCACCCACATGATACACCGGCAGTCGTAC CTTTCTTGTCTCCTAGAAACAGTCGGTCTTTGGTGCTGGCAGTGGGGGCT TATGGTTTCTTCTTCAGGTGCACACTACTCAACCCCACTTCTTGTACCAC AACCCAACGAGATGTTTTATCATTCTCTCCCACCAGAAGAACTGGCGCAA GTCATGCAACTCAGCAGCAAGAAAGCAGTGCCAAAACACTGGGAACCAGG GCGCCGGGGCGGAGGAAAGGAGGGACGTGCGCTTCATATTCCGCTACTGC TTGCTTGCCTTTATACAGAGACCACGGACATTTGTCCCAAACGATCCCTC TACATCCCTATTCATCTCAGCATATGCCTCACTCCCTCCCTCTGAAGACA GGTCTTACGCAGTCTATCAAGGCAGTGAAAGGAAGGAACAAGAGGCGACT CACGAGTCAAGCAACTTCTTGGGCGGCCATTGTTGGGGCGAGAGGATTCA GAATACAGCAAGCCAACGCCATCATGCCCACAGCCGTCTCTACACGCGGA GTGCACCAGGACACCTCCTCGGCCCTTGCTGCCTTGTCCAGCGCTGCCGC CATTCACAAGAATCATCTCAGCAAGCATTCCTCCGCTTCCAACGACCATG ACGCCCTCTCCTCCTCCTCGTCGTCGTCGTCGTCGTCCTCCTCCTCCTCC TCCTCCTCCTCCTCCTCCTCCCCATCTTCTCCGATCTTGAGCAAAGAAAA TAATCCCCTTGAATTCCCTTCATCGTCCGTATCGCATAAGGCCTCACTGG AGTCGCTTCTGCAGCCGACGGAGCAAGACCTGCCACAGCGGAGGGCGCAC AAGCGGTCATCGAGGTCCCTCCTCTCCACGCCCAATCAGCACCTCCACAC CGCCGTAACACCTGCCGTGCATCCCGAGACGTCCGGCGCTCGGAGGGCCT TCATGCTGCCCCTCCCGGGCTTGGGCCGATCCAACTCCACCAATAGTGTG CTTAGTGCACATAGAGGACGGCACAACAACGGCAGCTCCTACGTCTTCCC TCCCTCCCTTCCTCCCTCCCTTCCTAAGCCCACCGCGGGTGGCACCGATG AGTGGCGTCGGTCCCTGACCATCGAAGAAAGGATGGAGGTGAGGAAGCGA CTGAGGGCGGCTTATCTCAGCCAGACCAAGGAAGGGGACCTGGAGGGCTT GCTCGCGGCGATGGAAGAGGATTTTCTGCGCCTGAATGCCCCCTCTCGAC TCGATTACATCAAGGTCTCGCTGCAGTACGACAAGAAGCTGAGTGAGAAG CAAAGGCAGCTCCGAGGAGAGATGGACAGAATCTTTCTCCCCTCGTTCTC CTCCTCCTCATCCTCCTCCTCCTCCACTTCCTCCTCCTCCGCCTCCTCTT CTTCCCCCACTGCTTGCTTGTCCTCCACCACGAAAGAGAAGGAAGAGGAG GAGGAGGAGGAGGAGGAGGAGGGGGGGATGATAGCACGAGGAGAGGGAGG AGGAGGAGGAGGTGAAGAAAGAGGGGGAAGAGAACCCGCTGCGACGTCGG CGCAGCCAACGGAAGCAGAGGCTGAAGTGAGAAGAAGAAGAAGAAGAGGA GGAGGAGGAGGAGGAGGGGGAGGAGGAAAAGGAACGAGTCGTAAAAGAGT GAAGAATTAACGCAGGCAGGGAGGGAGAGAGGGAGAGAAGGCATGTACAT ATACATGTATATGGAGGGTGGGAGGGGGAAGAGAGTCACGAAACAGTAAA TAAAAGGAAATCGGAGGGTCGAGAGGGGCAGACATTCGTTTACCAGGACG GAGAGAGGGAGGAAGAGAGAAAGAGGGAGAGAGAACGAGGGAGGGAGGGA GGGAAGAAGAGAAGGATGCTATCAGGGAGATGAGGAGAAAGGCGGCACCG GAGAGAGGGAGAAGGCGAATGTGAAGGAGGGGTGGAGGAAGAGGAGAGGG AGGAGGAAGTTGATATACGAGAATCAAGCCCTCTCTTGAGCAAGCAAACC GACGATGAGGTCGTGGGGAGCCATGTGAAGGAGTAGAAGCAGCAGCAGCA GTCGCAGCAGCAACAAGGGCAATATCTCATTATCCAGCGATGGTGGAGTA AAAAATAAAAAAGGAAGAAGTACAAAAGGAGAAAAAACAAGGTGGGAAGG AGGGGGGGAAATGAGGCGCGAAAGCTTTCTTTCTGTTCCAGCCAGGAAAG TGACGAAGCCATTCCCCT back to topprotein sequence of NO02G00150.1 >NO02G00150.1-protein ID=NO02G00150.1-protein|Name=NO02G00150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=429bp MPHSLPLKTGLTQSIKAVKGRNKRRLTSQATSWAAIVGARGFRIQQANAI MPTAVSTRGVHQDTSSALAALSSAAAIHKNHLSKHSSASNDHDALSSSSS SSSSSSSSSSSSSSSSPSSPILSKENNPLEFPSSSVSHKASLESLLQPTE QDLPQRRAHKRSSRSLLSTPNQHLHTAVTPAVHPETSGARRAFMLPLPGL GRSNSTNSVLSAHRGRHNNGSSYVFPPSLPPSLPKPTAGGTDEWRRSLTI EERMEVRKRLRAAYLSQTKEGDLEGLLAAMEEDFLRLNAPSRLDYIKVSL QYDKKLSEKQRQLRGEMDRIFLPSFSSSSSSSSSTSSSSASSSSPTACLS STTKEKEEEEEEEEEEGGMIARGEGGGGGGEERGGREPAATSAQPTEAEA EVRRRRRRGGGGGGGGGGKGTSRKRVKN* back to topmRNA from alignment at chr2:57701..61325+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G00150.1 ID=NO02G00150.1|Name=NO02G00150.1|organism=Nannochloropsis oceanica|type=mRNA|length=3625bp|location=Sequence derived from alignment at chr2:57701..61325+ (Nannochloropsis oceanica) CTCCTCTCTGCTGAGGAAAATTCTGTTCGGAAATCGACACGGCTTCTACA
CACATTTGTTTCGTCTGACATCCACCCACATGATACACCGGCAGTCGTAC
CTTTCTTGTCTCCTAGAAACAGTCGGTCTTTGGTGCTGGCAGTGGGGGCT
TATGGTTTCTTCTTCAGGTGCACACTACTCAACCCCACTTCTTGTACCAC
AACCCAACGAGATGTTTTATCATTCTCTCCCACCAGAAGAACTGGCGCAA
GTCATGCAACTCAGCAGCAAGAAAGCAGTGCCAAAACACTGGGAACCAGG
GCGCCGGGGCGGAGGAAAGGAGGGACGTGCGCTTCATATTCCGCTACTGC
TTGCTTGCCTTTATACAGAGACCACGGACATTTGTCCCAAACGATCCCTC
TACATCCCTATTCATCTCAGCATATGCCTCACTCCCTCCCTCTGAAGACA
GGTCTTACGCAGTCTATCAAGGCAGTGAAAGGAAGGAACAAGAGGCGACT
CACGAGTCAAGCAACTTCTTGGGCGGCCATTGTTGGGGCGAGAGGATTCA
GAATACAGCAAGCCAACGCCATCATGCCCACAGCCGTCTCTACACGCGGA
GTGCACGTACGTTAGGAGAAGGGGAGAATGAATAAGGGAGGGATGGGGGG
AAGGGAGGTCGAGCGGGACATGGCCAAGGTGTTGGATTCTTCTGTCTTTG
GGGGACACTAAAGTCAGGCACATACCTGAGTGAGAAAGAAGAGGATGAGA
CAGGTCACCCTCATTCACATTTTGACCCCATGACGACAAATAGCAGGACA
CCTCCTCGGCCCTTGCTGCCTTGTCCAGCGCTGCCGCCATTCACAAGAAT
CATCTCAGCAAGGTTGGGAGGGAGGGAGCGATGGAGGGAGGGAGAAAGGC
GATGGGGATGGAGAGGGAGAGCTCTTCATCGAATGAGATAGGCGTATATT
GACCGTCTATGATCGTCGAGGCCGACGCTTCCTCATGTAAATATCTCATT
CTCCACTCTCTTTTCTCTTCATTATCCTCTTCCTTATTGATTTACAGCAT
TCCTCCGCTTCCAACGACCATGACGCCCTCTCCTCCTCCTCGTCGTCGTC
GTCGTCGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCATCTT
CTCCGATCTTGAGCAAAGAAAATAATCCCCTTGAATTCCCTTCATCGTCC
GTATCGCATAAGGCCTCACTGGAGTCGCTTCTGCAGCCGACGGAGCAAGA
CCTGCCACAGCGGAGGGCGCACAAGCGGTAGGGAGGGAGGGAGGGAGGGA
AGGAGGGAAGGAAGGAGGAAGGGAAGGAGGAAAGGGAGGAAGGAGTTGCT
TGAGAATGTAAGGAATTTTGGAAAACTAATCTCGAGACTGTGATGAAGGG
ATCTATCAGAACAAGAAAGATTCACCCCTTCTTCCCTCTCTCCCCCCCAT
GGCATCCAACCCAGGTCATCGAGGTCCCTCCTCTCCACGCCCAATCAGCA
CCTCCACACCGCCGTAACACCTGCCGTGCATCCCGAGAGTACGTACATCT
GCTAGAAGCCCGCCCGCCCTCCCTCCCTCCCTGGAGATTATTCTCGACCC
TACCATACTCCCTCCCACGGCCCCCTCCTCCCTCCCTTCCTCCTTCCCCT
CTTGCCTTGTCCCTCCTTCCGTCCCCCCCTTGCCCGAAACGACTCCTCGT
ATCTTACCTTCCCTCCCTCCCCCCCTCCCTCCCTTTCTCCCTCCCTTTCT
CCCTCCAGCGTCCGGCGCTCGGAGGGCCTTCATGCTGCCCCTCCCGGGCT
TGGGCCGATCCAACTCCACCAATAGTGTGCTTAGTGCACATAGAGGACGG
TAGGGAGGATGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGCGA
GGGTCTGGCGGGAGAAGATTGTAAAAGCAACGCCTCGATGGGAGCGAGAG
GACCAAAGTCATGTTTGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCGTTTCCTTCTGCTCTCCATCCCTCTCTTCTTCC
CTTCCATTCACATCCTCCCCCCCTACCTCTCCAGGCACAACAACGGCAGC
TCCTACGTCTTCCCTCCCTCCCTTCCTCCCTCCCTTCCTAAGCCCACCGC
GGGTGGCACCGATGAGTGGCGTCGGTCCCTGACCATCGAAGAAAGGATGG
AGGTGAGGAAGCGACTGAGGGCGGCTTATCTCAGCCAGACCAAGGAAGGG
GACCTGGAGGGCTTGCTCGCGGTAGGGAGGGAGGGAGGGAGGGAGGGAAA
GGGGATGGAAAATAGAAGATCTCTCAAAAGAGTTAAAGAGCTGTAGCATT
CGTTCGCTCCTTGTCACGTTCATTCGCAGATTTTCATCAAAGACCCTTCA
CAACCCTCCCCTCCTCCCTCCCTCCCTCCCTCACTTCCTCGCTCTCTCCC
CCTGTAGCTGGTGTAGGCGATGGAAGAGGATTTTCTGCGCCTGAATGCCC
CCTCTCGACTCGATTACATCAAGGTCTCGCTGCAGGTAGGTAGGTAGGGA
GGGAGGTAGGGAGGGAGGAGTGAGGAGGGAGGAGTGAGGAGTGAGGAAAA
AGGAACGGCAGCTACCCATACTGTTACTTATGCCATTCCTTTCCCCCTCC
CCCCCTCCCTCCCTCCCTCCCTCGCTACTCCAGTACGACAAGAAGCTGAG
TGAGAAGCAAAGGCAGCTCCGAGGAGAGATGGACAGAATCTTTCTCCCCT
CGTTCTCCTCCTCCTCATCCTCCTCCTCCTCCACTTCCTCCTCCTCCGCC
TCCTCTTCTTCCCCCACTGCTTGCTTGTCCTCCACCACGAAAGAGAAGGA
AGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGGGATGATAGCACGAGGAG
AGGGAGGAGGAGGAGGAGGTGAAGAAAGAGGGGGAAGAGAACCCGCTGCG
ACGTCGGCGCAGCCAACGGAAGCAGAGGCTGAAGTGAGAAGAAGAAGAAG
AAGAGGAGGAGGAGGAGGAGGAGGGGGAGGAGGAAAAGGAACGAGTCGTA
AAAGAGTGAAGAATTAACGCAGGCAGGGAGGGAGAGAGGGAGAGAAGGCA
TGTACATATACATGTATATGGAGGGTGGGAGGGGGAAGAGAGTCACGAAA
CAGTAAATAAAAGGAAATCGGAGGGTCGAGAGGGGCAGACATTCGTTTAC
CAGGACGGAGAGAGGGAGGAAGAGAGAAAGAGGGAGAGAGAACGAGGGAG
GGAGGGAGGGAAGAAGAGAAGGATGCTATCAGGGAGATGAGGAGAAAGGC
GGCACCGGAGAGAGGGAGAAGGCGAATGTGAAGGAGGGGTGGAGGAAGAG
GAGAGGGAGGAGGAAGTTGATATACGAGAATCAAGCCCTCTCTTGAGCAA
GCAAACCGACGATGAGGTCGTGGGGAGCCATGTGAAGGAGTAGAAGCAGC
AGCAGCAGTCGCAGCAGCAACAAGGGCAATATCTCATTATCCAGCGATGG
TGGAGTAAAAAATAAAAAAGGAAGAAGTACAAAAGGAGAAAAAACAAGGT
GGGAAGGAGGGGGGGAAATGAGGCGCGAAAGCTTTCTTTCTGTTCCAGCC
AGGAAAGTGACGAAGCCATTCCCCT back to topCoding sequence (CDS) from alignment at chr2:57701..61325+ >NO02G00150.1 ID=NO02G00150.1|Name=NO02G00150.1|organism=Nannochloropsis oceanica|type=CDS|length=1287bp|location=Sequence derived from alignment at chr2:57701..61325+ (Nannochloropsis oceanica) ATGCCTCACTCCCTCCCTCTGAAGACAGGTCTTACGCAGTCTATCAAGGC AGTGAAAGGAAGGAACAAGAGGCGACTCACGAGTCAAGCAACTTCTTGGG CGGCCATTGTTGGGGCGAGAGGATTCAGAATACAGCAAGCCAACGCCATC ATGCCCACAGCCGTCTCTACACGCGGAGTGCACCAGGACACCTCCTCGGC CCTTGCTGCCTTGTCCAGCGCTGCCGCCATTCACAAGAATCATCTCAGCA AGCATTCCTCCGCTTCCAACGACCATGACGCCCTCTCCTCCTCCTCGTCG TCGTCGTCGTCGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCC ATCTTCTCCGATCTTGAGCAAAGAAAATAATCCCCTTGAATTCCCTTCAT CGTCCGTATCGCATAAGGCCTCACTGGAGTCGCTTCTGCAGCCGACGGAG CAAGACCTGCCACAGCGGAGGGCGCACAAGCGGTCATCGAGGTCCCTCCT CTCCACGCCCAATCAGCACCTCCACACCGCCGTAACACCTGCCGTGCATC CCGAGACGTCCGGCGCTCGGAGGGCCTTCATGCTGCCCCTCCCGGGCTTG GGCCGATCCAACTCCACCAATAGTGTGCTTAGTGCACATAGAGGACGGCA CAACAACGGCAGCTCCTACGTCTTCCCTCCCTCCCTTCCTCCCTCCCTTC CTAAGCCCACCGCGGGTGGCACCGATGAGTGGCGTCGGTCCCTGACCATC GAAGAAAGGATGGAGGTGAGGAAGCGACTGAGGGCGGCTTATCTCAGCCA GACCAAGGAAGGGGACCTGGAGGGCTTGCTCGCGGCGATGGAAGAGGATT TTCTGCGCCTGAATGCCCCCTCTCGACTCGATTACATCAAGGTCTCGCTG CAGTACGACAAGAAGCTGAGTGAGAAGCAAAGGCAGCTCCGAGGAGAGAT GGACAGAATCTTTCTCCCCTCGTTCTCCTCCTCCTCATCCTCCTCCTCCT CCACTTCCTCCTCCTCCGCCTCCTCTTCTTCCCCCACTGCTTGCTTGTCC TCCACCACGAAAGAGAAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGG GGGGATGATAGCACGAGGAGAGGGAGGAGGAGGAGGAGGTGAAGAAAGAG GGGGAAGAGAACCCGCTGCGACGTCGGCGCAGCCAACGGAAGCAGAGGCT GAAGTGAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGGGGAGG AGGAAAAGGAACGAGTCGTAAAAGAGTGAAGAATTAA back to top
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