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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:42821..47075 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G00120.1 vs.
Match: EWM30663.1 (Lipase, class 3 [Nannochloropsis gaditana]) HSP 1 Score: 757.7 bits (1955), Expect = 2.400e-215 Identity = 377/498 (75.70%), Postives = 429/498 (86.14%), Query Frame = 0
Query: 3 SPVQEKGPSKLSDLLQNAVFDIEKAVKTASFAFSVYGAPNISTWYNVQGGTRLGLPQETVRRNFAARLRVTVRRAKELPKEATMADYVLSGSTPDAFVLLEVKSRWGYDQGRTATIKDSYAPEWTADGAKATHDLLVEDLATASLEITVRDENRLGKDTVIGKASIPPSLLPALHENWTGWLPLKEEGKEKERGHIELSVQVLPAVGEGEGIELSESAAAGATTLA-ANGVGGDDDEEDDEAPKSTEADLDWHALAEKLTNASLSLRKYRLAAFFTNETTDTQGGIWWRKATKELILVFRGTEITSFTDVMTDMDIRQVPLDGDGDKRLVHTGFITAFRSVVDAAYHCLDLAVGKGGDWIKDGWTVDCSGHSLGGALASLMAHSIGHRYPELCTTNRLHMYSFGAPRVGNPAFCEEFNMILGHALFRIVNKADVVPRMPGRKNPGSIEYDHFGFCVLVTDEALQSVSIYLDGEANLVD-PTAPPPLPPSRPRPKLSPA 499
SP QE+ PSKLSDLL++AVFD+EKAVKTASFAFSVYGAP I+TWYNVQGGTRLGLPQETVRRNFAARLRVTV RAK+LPKE+ +ADY+LSGS PDA+ LLEVKS+WGYDQGRT TI DS APEWT D A AT +LLVEDL+TA+LE+++RDENRLGKD+V+G+ASIPP +PA+H +WTGWLPLK+ + +G +EL V+ LPAV GEGIELSES+A T++ N G D DEED EAP+STEADLDW+A+A KLTNASLSLRKYR+A FFTNE+TDTQGGIWWRK+TKE+ILVFRGTEITS DVMTD++I Q PL GDGDKRLVHTGF TAF S+VD AYH L++AVGKG DW K GWT+DCSGHSLGGALASLMAH+I H YPELC NRLHMYSFGAPRVGNPAFCEEFNM+LGHALFRIVNKADVVPRMPGR N GSIEYDHFGFCVL+TDEAL+SVSIYLDG+ N + +AP PPS P P LSP+
Sbjct: 4 SPTQERPPSKLSDLLKDAVFDVEKAVKTASFAFSVYGAPKINTWYNVQGGTRLGLPQETVRRNFAARLRVTVLRAKDLPKESKLADYILSGSMPDAYALLEVKSKWGYDQGRTITIPDSNAPEWT-DPATATSELLVEDLSTATLEVSLRDENRLGKDSVLGQASIPPPEIPAMHSSWTGWLPLKQAENKLGKGKVELRVETLPAVRAGEGIELSESSANLGTSIPWTNDNGLDSDEEDAEAPRSTEADLDWNAMAAKLTNASLSLRKYRMAVFFTNESTDTQGGIWWRKSTKEVILVFRGTEITSLQDVMTDLNIVQTPL-GDGDKRLVHTGFWTAFNSIVDGAYHSLEMAVGKGEDWAKGGWTIDCSGHSLGGALASLMAHNIAHNYPELCRNNRLHMYSFGAPRVGNPAFCEEFNMLLGHALFRIVNKADVVPRMPGRNNLGSIEYDHFGFCVLITDEALKSVSIYLDGQRNQDEAASAPSSNPPSDPAP-LSPS 498
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G00120.1 ID=NO02G00120.1|Name=NO02G00120.1|organism=Nannochloropsis oceanica|type=mRNA|length=2438bp CTACAGGACTCAAAGCATCCTCAGCCGACCCTGTCGCCTTCCTACTAGCA CCCGATCCGCAAGCTTCACAAGCCATGGCGTCTCCCGTGCAAGAAAAAGG TCCCTCCAAGCTCTCGGATTTGCTCCAAAATGCTGTTTTTGACATAGAGA AGGCTGTGAAAACTGCGTCGTTTGCCTTCTCAGTCTATGGCGCCCCCAAC ATCTCCACCTGGTACAACGTGCAGGGTGGAACGCGCTTGGGTCTGCCGCA GGAAACCGTGCGTCGGAACTTTGCCGCCCGTCTACGCGTGACGGTGCGGC GTGCCAAGGAGCTCCCTAAGGAAGCGACCATGGCAGATTACGTCCTCTCT GGATCGACACCTGATGCTTTTGTGTTGCTGGAGGTCAAGTCTCGGTGGGG TTATGACCAGGGAAGGACTGCTACCATCAAGGACTCCTACGCGCCCGAGT GGACAGCAGATGGAGCCAAAGCCACTCACGACTTGCTCGTAGAGGACCTG GCGACAGCTTCCCTCGAGATCACTGTCCGCGATGAGAACCGATTGGGCAA GGACACAGTCATCGGAAAAGCCTCCATCCCTCCATCCCTCCTCCCCGCCC TGCATGAGAACTGGACGGGCTGGTTGCCCTTAAAGGAGGAAGGGAAGGAG AAAGAGAGGGGGCACATTGAGTTGTCGGTGCAGGTTTTGCCGGCGGTGGG GGAGGGGGAGGGAATCGAGCTGAGCGAGAGCGCGGCGGCTGGTGCAACGA CCTTGGCAGCGAACGGCGTTGGCGGCGATGATGACGAGGAGGACGACGAA GCGCCCAAGAGCACGGAGGCCGACCTCGACTGGCACGCGTTGGCTGAGAA GCTCACGAACGCCTCCCTGTCCCTGCGGAAGTATCGGCTGGCTGCCTTTT TCACTAACGAGACTACAGACACCCAGGGCGGCATCTGGTGGCGGAAGGCG ACCAAAGAGCTGATCTTGGTGTTTCGCGGCACGGAGATCACGTCCTTTAC TGACGTCATGACCGACATGGACATCCGACAAGTGCCATTGGACGGCGACG GTGACAAGCGCCTGGTGCACACGGGTTTTATCACCGCCTTTCGCTCGGTC GTGGACGCCGCCTACCACTGCCTCGATCTGGCCGTCGGGAAAGGCGGAGA CTGGATCAAGGACGGGTGGACCGTCGACTGCTCGGGCCACTCCCTGGGCG GGGCGTTGGCCTCTCTCATGGCGCACAGCATCGGCCACAGGTATCCGGAG CTCTGCACGACCAATCGCCTTCACATGTATTCATTTGGAGCCCCCCGTGT AGGCAACCCGGCCTTCTGCGAGGAATTCAACATGATCCTTGGCCACGCCC TCTTTCGCATCGTCAACAAGGCCGACGTTGTGCCGCGAATGCCCGGCCGC AAGAACCCAGGTTCCATCGAGTACGATCACTTCGGCTTCTGCGTCCTCGT CACGGACGAGGCCCTCCAGTCCGTTTCCATCTACCTTGACGGGGAGGCCA ACCTTGTGGACCCCACTGCTCCTCCCCCCCTTCCTCCCTCCCGCCCTCGG CCGAAGCTCTCTCCAGCCTGGTGGAAGGCAAAGTACCCGTCTCGGCGGCC ACAGCGGCGGTGGACGAGGGAAAGGAGGATAGCGACAAGACCACCATAAA AGACATGCAGGACATGGCCTCCTCCAACATTAAGGCCTTGGGCGGCTTCC TGCAGGCCGAGCCCGTGGGCCCATACGAGCGTGCAGACAGGGGCATGGAG ACCTTGCCGGAACTGCCGCGGCGTGGGTCGATCCCTGTCACCCTAGGGGT GCCAGAAGTAGTGATGGGCGAGTCCCTCTTCAGTTCCGACGTCCGCGACC ACACCGAAAGCTCCTACTTCGAGGCTATCCAGGTACGTACGTCGATTGTG TTGCCTTGTGTCTTTTCTGCCCTCGTCCTCCTGGCGGTGGAGCACCTGAC TGACTGACTTGACTGACTATATATGTAGTAGCACTCGAATGCGTTTCAAA TCCCCTTGGGATCTGTCGCCTATCCTGTACTGTTTTTTTCTTGTCATCCG CTCATTCAATATGTGGCTACGCTTTCGCGGCATTCTATTCTCTCTCCCTC TTTAGAAATTCGCCGCGCTCATGGTGGATCAAAAGAAGAAGGAATCTACG GTCTAGACGAGGGGGCGAGATGGATGGGGGAGAGCATGAAGGCAGGGGGA GCGACGGATGGAGTGTGCCAGAAATGAGGGGGTTCTGCATATATGTAGAG CGAGTTGCACATGTTGCCAAGACTGAGTCGCACATATTATCAAGGGGCGT CTGTCACCACAGGGTCTTTCAGACGGCATGCTCCCTCGTTATTTTCCTTT TACTCGCCCCTCAACGATGGAAAAATAACAGTACGTTATAGAATTCAAAG ATTGTTTCGTTATGTTATTCTTGTGCTTCGGGGATTTG back to topprotein sequence of NO02G00120.1 >NO02G00120.1-protein ID=NO02G00120.1-protein|Name=NO02G00120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=525bp MASPVQEKGPSKLSDLLQNAVFDIEKAVKTASFAFSVYGAPNISTWYNVQ GGTRLGLPQETVRRNFAARLRVTVRRAKELPKEATMADYVLSGSTPDAFV LLEVKSRWGYDQGRTATIKDSYAPEWTADGAKATHDLLVEDLATASLEIT VRDENRLGKDTVIGKASIPPSLLPALHENWTGWLPLKEEGKEKERGHIEL SVQVLPAVGEGEGIELSESAAAGATTLAANGVGGDDDEEDDEAPKSTEAD LDWHALAEKLTNASLSLRKYRLAAFFTNETTDTQGGIWWRKATKELILVF RGTEITSFTDVMTDMDIRQVPLDGDGDKRLVHTGFITAFRSVVDAAYHCL DLAVGKGGDWIKDGWTVDCSGHSLGGALASLMAHSIGHRYPELCTTNRLH MYSFGAPRVGNPAFCEEFNMILGHALFRIVNKADVVPRMPGRKNPGSIEY DHFGFCVLVTDEALQSVSIYLDGEANLVDPTAPPPLPPSRPRPKLSPAWW KAKYPSRRPQRRWTRERRIATRPP* back to topmRNA from alignment at chr2:42821..47075- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G00120.1 ID=NO02G00120.1|Name=NO02G00120.1|organism=Nannochloropsis oceanica|type=mRNA|length=4255bp|location=Sequence derived from alignment at chr2:42821..47075- (Nannochloropsis oceanica) CTACAGGACTCAAAGCATCCTCAGCCGACCCTGTCGCCTTCCTACTAGCA
CCCGATCCGCAAGCTTCACAAGCCATGGCGTCTCCCGTGCAAGAAAAAGG
TCCCTCCAAGCTCTCGGATTTGCTCCAAAATGCTGTTTTTGACATAGAGA
AGGCTGTGAAAACTGCGTCGTTTGCCTTCTCAGTCTATGGCGCCCCCAAC
ATCTCCACCTGGTACAACGTGCAGGGTGGAACGCGCTTGGGTCTGCCGCA
GGTAACATAGAGGGGGAATTGATGACAATAGAGTAGTTTGATTGCGCATT
TTGCTGTTCAAATGTGTCACCGGACCAATCAATCGCCACCACCTCGCTCT
CTCCCTCAGGAAACCGTGCGTCGGAACTTTGCCGCCCGTCTACGCGTGAC
GGTGCGGCGTGCCAAGGAGCTCCCTAAGGAAGCGACCATGGCAGATTACG
TCCTCTCTGGATCGACACCTGATGCTTTTGTGTTGCTGGAGGTCAAGTCT
CGGTGGGGTTATGACCAGGGAAGGACTGCTACCATCAAGGACTCCTACGC
GCCCGAGTGGACAGCAGGTATAGTTTTTTGTGAAAAGAAAGAAACAAAAA
TGCTTTTTCCTACACCCACATTCTGTCATGATTTCATGGTGGCTGTCTTT
AGCTTGTTTCGCCCTGTCTCTCATTCAGACGTATCCACCGTCTTCCTTCC
TCTTCCTTCCCTCCCTCCTCTTCCCTCTCCTCCCTTCTCCCTCTTCTCTA
GATGGAGCCAAAGCCACTCACGACTTGCTCGTAGAGGACCTGGCGACAGC
TTCCCTCGAGATCACTGTCCGCGATGAGAACCGATTGGGCAAGGACACAG
TCATCGGAAAAGCCTCCATCCCTCCATCCCTCCTCCCCGCCCTGCATGAG
AACTGGACGGGCTGGTTGCCCTTAAAGGAGGAAGGGAAGGAGAAAGAGAG
GGGGCACATTGAGTTGTCGGTGCAGGTTTTGCCGGCGGTGGGGGAGGGGG
AGGGAATCGAGCTGAGCGAGAGCGCGGCGGCTGGTGCAACGACCTTGGCA
GCGAACGGCGTTGGCGGCGATGATGACGAGGAGGACGACGAAGTAGGGAG
GGAGGAAGGGCAGGAGGGGGGAAGCAGGAAATGAAGTGGACAAATGCATG
TTTGATTGAATTTATCTTGCCACCTTTCTTCTCTACTCCTTCCCGTGTTT
GCAGGCGCCCAAGAGCACGGAGGCCGACCTCGACTGGCACGCGTTGGCTG
AGAAGGTAAGCTTTAGAAGGGCAGTTACATCCCTCTTCCTCCCTCCCTCC
CTCCCTCCCTCCCTTGCTCTCTGTCCCTTGCTCCACCCTCTGCTTTCCTT
TCATTCTCTGTTGATCACCCACTCCATTCCCGTCACTCCACCACCTTCCC
CTCCTTCCTACCCTTCTCTTTCCTTCAGCTCACGAACGCCTCCCTGTCCC
TGCGGAAGTATCGGCTGGCTGCCTTTTTCACTAACGAGACTACAGACACC
CAGGGCGGCATCTGGTGGCGGAAGGCGACCAAAGAGGTGAGGGAGGCGAG
GAGGGAGGGAGGGAGGAAAGGGCTGATGTACCTCCCAAGAAAGCGAAATG
ATCGATTGCTTCATTTGTATTAAGCCTTATGCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCTCTCCCCCTTAGCTGATCTTGGTGTTTCGCGGC
ACGGAGATCACGTCCTTTACTGACGTCATGACCGACATGGACATCCGACA
AGTGCCATTGGGTTGGTAGGGAGGGAAGGAGGGAGGGAGGGAGGGCGGCG
TCAGCCAAGGGATGCATTGTTGTCCCTGCGATTTCCTTGGCTTGCCTTTT
CCGCCCTCCGTTACATTTGCTTCCCTCGTGAAAGGCATTTACCGATGATG
CGCATCGGGTCCACACGGCACGGCCTCGTGGGCGCTTCATCTCCTACCGG
CTGTCACACGCCATCACTAACTCCCTTCTCTTCCCTCCCTGCCTCCCTTT
CCCTTCCCCTCCTCCCTCAGACGGCGACGGTGACAAGCGCCTGGTGCACA
CGGGTTTTATCACCGCCTTTCGCTCGGTCGTGGACGCCGCCTACCACTGC
CTCGATCTGGCCGTCGGGAAAGGCGGAGGTAAGTCCATGCCTGCCCTCCC
TCCCGCCCTCCCGTCGTTTTTTTGGGGGCATTTGCAGCCTTTGTGTACCT
TTTTTGCGGCACTGACCTGGTCTTCCTGACCCGCACTTGTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAGACTGGATCAAGGACGG
GTGGACCGTCGACTGCTCGGGCCACTCCCTGGGCGGGGCGTTGGCCTCTC
TCATGGCGCACAGCATCGGCCACAGGTATCCGGAGGTAGGTCGGTGGGTT
GGTCGGGAGGGAGGGAGGGAGGGAGGAATCGGTACCCCTCTGCTATGCAT
GCGACTGCACTGTACACGTTGGCTCCCATCCCCCTCCCTCCCTCACCTTC
CTCCCCTCCACCCTTCCCCTTGCGCCTCAAGCTCTGCACGACCAATCGCC
TTCACATGTATTCATTTGGAGCCCCCCGTGTAGGCAACCCGGCCTTCTGC
GAGGAATTCAACATGATCCTTGTAAGGAGGGAGGGAGGGGGAGGGGGGGA
GGGAGGGAGGGGTTTCGGTACAACGCATCAGTTTCATAAGTCCGCTCATA
TCCTGCTTCCCCCCTCCCTTCCTCCCCTCCCCCCCTCCTTGCCCCATTCA
TTCTGTCGCTTCTCAGGGCCACGCCCTCTTTCGCATCGTCAACAAGGCCG
ACGTTGTGCCGCGAATGCCCGGCCGCAAGAACCCAGGCATGCATTCCTCC
CTCTTCCTTTCCCTTTCCCTCTTTCTTTCCCCTCCCCTCTCTCTTTCCCC
CCCTCCTTCTCACCCCTTCCCCCCTTCCCTTTCCTCCCTCCCGCCCCGCT
CTCTCTGCCTCCCTCCCTCCCTCCCAGGTTCCATCGAGTACGATCACTTC
GGCTTCTGCGTCCTCGTCACGGACGAGGCCCTCCAGTCCGTTTCCATCTA
CCTTGACGGGGAGGCCAACCTTGTGGACCCCACTGCTCCTCCCCCCCTTC
CTCCCTCCCGCCCTCGGCCGAAGCTCTCTCCAGCCTGGTGGAAGGCAAAG
TACCCGTCTCGGCGGCCACAGCGGCGGTGGACGAGGGAAAGGAGGATAGG
TGCGTCGTCTAGGCCGTAATTGGGCGTGCACTCGACGGCAAGTCACCTGA
TCCTCCCTCCCCTCCTCCCCTTTCTTTCTTCCCCCAGCGACAAGACCACC
ATAAAAGACATGCAGGACATGGCCTCCTCCAACATTAAGGCCTTGGGCGG
CTTCCTGCAGGCCGAGCCCGTGGGCCCATACGAGCGTGCAGACAGGGGCA
TGGAGACCTTGCCGGAACTGGTGGGTGATGGCATGCGAAGGGAGGGAGGG
AGGGAGGGAGGCTTGACCGGAAGGAGGGCCAAGAGAAGACAGCGAGAAAA
AGATTATTATCATTGCGTCTTGGATGCCCACACAAAGTTCTTCTTCCCTT
CGTTTCCTTCCCCTCATGCTTCACCCAATCAGCCGCGGCGTGGGTCGATC
CCTGTCACCCTAGGGGTGCCAGAAGTAGTGATGGGCGAGTCCCTCTTCAG
TTCCGACGTCCGCGACCACACCGAAAGCTCCTACTTCGAGGCTATCCAGG
TACGTACGTCGATTGTGTTGCCTTGTGTCTTTTCTGCCCTCGTCCTCCTG
GCGGTGGAGCACCTGACTGACTGACTTGACTGACTATATATGTAGTAGCA
CTCGAATGCGTTTCAAATCCCCTTGGGATCTGTCGCCTATCCTGTACTGT
TTTTTTCTTGTCATCCGCTCATTCAATATGTGGCTACGCTTTCGCGGCAT
TCTATTCTCTCTCCCTCTTTAGAAATTCGCCGCGCTCATGGTGGATCAAA
AGAAGAAGGAATCTACGGTCTAGACGAGGGGGCGAGATGGATGGGGGAGA
GCATGAAGGCAGGGGGAGCGACGGATGGAGTGTGCCAGAAATGAGGGGGT
TCTGCATATATGTAGAGCGAGTTGCACATGTTGCCAAGACTGAGTCGCAC
ATATTATCAAGGGGCGTCTGTCACCACAGGGTCTTTCAGACGGCATGCTC
CCTCGTTATTTTCCTTTTACTCGCCCCTCAACGATGGAAAAATAACAGTA
CGTTATAGAATTCAAAGATTGTTTCGTTATGTTATTCTTGTGCTTCGGGG
ATTTG back to topCoding sequence (CDS) from alignment at chr2:42821..47075- >NO02G00120.1 ID=NO02G00120.1|Name=NO02G00120.1|organism=Nannochloropsis oceanica|type=CDS|length=1575bp|location=Sequence derived from alignment at chr2:42821..47075- (Nannochloropsis oceanica) ATGGCGTCTCCCGTGCAAGAAAAAGGTCCCTCCAAGCTCTCGGATTTGCT CCAAAATGCTGTTTTTGACATAGAGAAGGCTGTGAAAACTGCGTCGTTTG CCTTCTCAGTCTATGGCGCCCCCAACATCTCCACCTGGTACAACGTGCAG GGTGGAACGCGCTTGGGTCTGCCGCAGGAAACCGTGCGTCGGAACTTTGC CGCCCGTCTACGCGTGACGGTGCGGCGTGCCAAGGAGCTCCCTAAGGAAG CGACCATGGCAGATTACGTCCTCTCTGGATCGACACCTGATGCTTTTGTG TTGCTGGAGGTCAAGTCTCGGTGGGGTTATGACCAGGGAAGGACTGCTAC CATCAAGGACTCCTACGCGCCCGAGTGGACAGCAGATGGAGCCAAAGCCA CTCACGACTTGCTCGTAGAGGACCTGGCGACAGCTTCCCTCGAGATCACT GTCCGCGATGAGAACCGATTGGGCAAGGACACAGTCATCGGAAAAGCCTC CATCCCTCCATCCCTCCTCCCCGCCCTGCATGAGAACTGGACGGGCTGGT TGCCCTTAAAGGAGGAAGGGAAGGAGAAAGAGAGGGGGCACATTGAGTTG TCGGTGCAGGTTTTGCCGGCGGTGGGGGAGGGGGAGGGAATCGAGCTGAG CGAGAGCGCGGCGGCTGGTGCAACGACCTTGGCAGCGAACGGCGTTGGCG GCGATGATGACGAGGAGGACGACGAAGCGCCCAAGAGCACGGAGGCCGAC CTCGACTGGCACGCGTTGGCTGAGAAGCTCACGAACGCCTCCCTGTCCCT GCGGAAGTATCGGCTGGCTGCCTTTTTCACTAACGAGACTACAGACACCC AGGGCGGCATCTGGTGGCGGAAGGCGACCAAAGAGCTGATCTTGGTGTTT CGCGGCACGGAGATCACGTCCTTTACTGACGTCATGACCGACATGGACAT CCGACAAGTGCCATTGGACGGCGACGGTGACAAGCGCCTGGTGCACACGG GTTTTATCACCGCCTTTCGCTCGGTCGTGGACGCCGCCTACCACTGCCTC GATCTGGCCGTCGGGAAAGGCGGAGACTGGATCAAGGACGGGTGGACCGT CGACTGCTCGGGCCACTCCCTGGGCGGGGCGTTGGCCTCTCTCATGGCGC ACAGCATCGGCCACAGGTATCCGGAGCTCTGCACGACCAATCGCCTTCAC ATGTATTCATTTGGAGCCCCCCGTGTAGGCAACCCGGCCTTCTGCGAGGA ATTCAACATGATCCTTGGCCACGCCCTCTTTCGCATCGTCAACAAGGCCG ACGTTGTGCCGCGAATGCCCGGCCGCAAGAACCCAGGTTCCATCGAGTAC GATCACTTCGGCTTCTGCGTCCTCGTCACGGACGAGGCCCTCCAGTCCGT TTCCATCTACCTTGACGGGGAGGCCAACCTTGTGGACCCCACTGCTCCTC CCCCCCTTCCTCCCTCCCGCCCTCGGCCGAAGCTCTCTCCAGCCTGGTGG AAGGCAAAGTACCCGTCTCGGCGGCCACAGCGGCGGTGGACGAGGGAAAG GAGGATAGCGACAAGACCACCATAA back to top
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