NO02G00060.1, NO02G00060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G00060.1
Unique NameNO02G00060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3210
Alignment locationchr2:16593..19879 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:16593..19879 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G00060.1 vs.
Match: XP_005855493.1 (egl nine 1-like protein, partial [Nannochloropsis gaditana CCMP526]; XP_005855665.1 egl nine 1-like protein, partial [Nannochloropsis gaditana CCMP526]; EKU20697.1 egl nine 1-like protein, partial [Nannochloropsis gaditana CCMP526]; EKU20868.1 egl nine 1-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 307.4 bits (786), Expect = 6.900e-80
Identity = 158/256 (61.72%), Postives = 195/256 (76.17%), Query Frame = 0 
Query:   13 QRAEAAAMVGVACVGLGSLISSAQSESVLSDPASEAAYSY-----KFPVAFPSVANAIRNGHVIVLDTMLSDRELHAAREDVDILLQQGGGTFAANANRDSSVRRDSVVWITGQEKGVGPGLKHAVALLRGLAHEFAATPAYDKSVLWVQSAAQLACYAGDSQAHYTPHLDASTDSIWTLGLSAWLRARAYRERTITAILYLNDKNWDKDTMGGCLRCHLPNSSSKTGCDS-----GGVAVASDGGGSALGRMRTK 259
            Q AEAAAM+ VA   +G+L+ SAQSE+V S+PA EAAY +      FP+AF ++A A+R GHV+V+D ++SD+EL AA+ DV  LL+QG G FA NAN DSSVR DSV W+TG+E G GPGLKHAVALL+GLAHEF+ TP Y KSVL+VQSAAQLACYAGD QA Y PHLDAST+S+WTLGL+AWLRARAYRERTITAILYLNDK+WD D  GGCLRC+LP++ ++ G        G +   +  G   + + R+K
Sbjct:    1 QGAEAAAMLAVAGATMGTLVMSAQSEAVCSNPACEAAYEHVRNGRPFPIAFAAIARALRRGHVVVIDPVMSDQELLAAQNDVKALLRQGDGAFAVNANDDSSVRLDSVTWVTGEEAGTGPGLKHAVALLKGLAHEFSRTPEYSKSVLFVQSAAQLACYAGDGQAFYAPHLDASTESVWTLGLNAWLRARAYRERTITAILYLNDKDWDADLSGGCLRCYLPSALAQGGMHDKPSGLGELPATTTSGSRRISQDRSK 256
The following BLAST results are available for this feature:
BLAST of NO02G00060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855493.16.900e-8061.72egl nine 1-like protein, partial [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G00060NO02G00060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G00060.1NO02G00060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G00060.1.cds1NO02G00060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00060.1.cds2NO02G00060.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G00060.1 ID=NO02G00060.1|Name=NO02G00060.1|organism=Nannochloropsis oceanica|type=mRNA|length=3210bp
CGATTTATTTTTTTGGACGCCCTACTTGTACTGCCTACCCATCGATAAAA
GGGAATACATTCAGGAGGCTCTTGACCAGCACACACGAGCTAGCAACCAA
AGCACCAATTTCTCCACCTTTACTTCTATGTTAGACATACACGCACTTCC
TCTCAACAATTCGGTCCTTCTATGCACACGATCCCCCTAATGATCTGCAG
CGCTTGCAATGCTTCACGTCCCCGCGCGCGAATGGCACGGTTGTCATCCA
GAAATATATTGGCCAAATTTGGACAGCCCCCTTCAACTTCTCCCATCTGG
CCCCCGTTGCCTTCCTCCCCCCCCAACCCTCCGTCCGTGGTTTCCGTCGC
CAGAAAGTCCCTAAAAGCACAGGCCCCATCATCTCCTATCCTATTCCCTC
GCAGATCCAATGTCTCCAGCTGCAGCATAGCAGTTGTGCTCATCGTACTT
ACTGCAGCAGCTCGGGCCGTCCTCATCTTTCCTCCCTCGACTGACAAGCG
CTCCGCAAGGGCAAGCGCTCCTTCGTTTCCGATGGCATTGCAAGCCAAAT
CTAGCTCCCGCAGCATGGGCATGTGAGCCAGGCAATCAGCCACGGCCCTC
GCCCCTGTGTCGCCAATGCCATTAAATCCAAGATAAAATTCGTCCAGACA
CGGCATGCCACCTCCCGCAGCCAGTCCCTCCGCCACCGACGTGGCCCCGC
AGTCGCCCAATTGATTCAGGTGCAAGTCAAGCTTCAGCAGCCTCTTTAAG
GAAATAGAGCCGAGAGCACCTCCTATGTGCAAGGCGGCAATGGTGCCCAG
ATCATTTTGCGCGAGGCTGAGAGAGGTCAATGGTGCACTGCAGGCCCCGC
ATTTCAGGACCTCACATAAAACGGCAATATGATCTTCTCCCTCCCCACCA
CCGCCTCCATAGTCGTCGCCCCCGATTTGATTGGCACGCACGTAGAGCCC
TTGCAAACCAGAGCGAAACCCCCCTCGCTCTAGGGCCTGTGCCAGAGCAA
GGCATCCCTCGCTTCTCAGCTTGTTATCGAACAGATTGAGGGAACGTACC
GTTTGGAAAAAATTGCCCTCCTCCGCGGCTAGGCGCCCCAATGTAAGGAT
AATATTGGGAGTAAGCTCGGCTGAGGATAAGTCCAAGACGCGAAGGGCTT
TACAAAATGGCAAGCGACGCGTGATGATGTCTTCAACGACGACCACAGTT
AATTGCTTCGATGGACGGAAGAAGGACATGCCGTTCGATATCAAATTGGT
CCCATTTTCGTCCTGTGCGGCACCCAACCCCCGAGCTGCCGAGGTCAAGC
GAGCCACATCTCCTGGCCACATGTAAGCGCAGATCTCATAAAGGAGAGCA
TGGGGGAGGGTGGGCAGGGCGACGAGACGTGGAGGTATTGGTGCTGCTCG
AGCGAAAGGAGTAGGAAGAAAAAGTGGTGGTGACGGTAAGCTCATGATGG
AAAGGTTTTAGCCCTTGGCCTATTTTAAACGGGTGTGTGGTGCTTACTTT
TAGAAATTGTAAGCGTGCGGTGAGACACGTTCGACGTCGAAGCCCGCCGG
CGAGATCCAGTCGCTAATCGTTGCGTCGTCATCGCCCAGCAAAATGCAAC
ATGCAAGAAAGCATACGCTTGAAAACTGACCACGCAAAACAAATCCACAT
GCATCGCCAGTCGTCGTCCACATGGTTTTGGCCTCGATCCGCCGAGCTGC
CACGAGCCAGCGGGCCGAGGCCGCGGCCATGGTGGGAGTGGCGTGTGTGG
GCCTGGGTTCATTAATTTCGTCGGCACAGAGTGAATCTGTGCTCTCAGAT
CCTGCCAGCGAAGCCGCCTACTCGTATAAATTTCCCGTGGCTTTTCCCTC
TGTGGCAAATGCCATTCGCAACGGGCACGTGATTGTGCTGGATACGATGT
TGAGCGACCGAGAGCTTCATGCTGCGCGAGAGGACGTGGATATTTTGCTA
CAACAAGGTGGCGGTACCTTTGCGGCGAACGCCAATAGGGACTCGAGCGT
GCGGCGCGACTCGGTGGTGTGGATAACGGGACAAGAAAAAGGGGTCGGAC
CTGGATTGAAGCATGCCGTCGCGTTGCTGCGTGGCCTGGCGCACGAGTTT
GCGGCAACGCCTGCCTACGATAAGAGTGTGTTGTGGGTTCAGTCCGCCGC
GCAACTGGCATGCTATGCAGGGGACAGCCAAGCCCATTATACACCGCATC
TGGATGCCTCCACGGATAGCATCTGGACCCTCGGTTTGAGTGCCTGGCTT
CGTGCCCGGGCCTACCGCGAGAGGACCATAACGGCGATATTGTACTTAAA
TGATAAGAATTGGGACAAGGATACAATGGGCGGCTGCTTGCGATGTCACT
TGCCTAATTCTTCTTCCAAGACTGGTTGTGATTCGGGTGGTGTTGCTGTT
GCATCTGATGGTGGTGGTAGTGCTCTTGGTCGAATGAGGACGAAGCAGCA
GCCGATGTTACAAGACGGTGATGCCATTGACACTACTGCCACAAATGACG
TTACCGTGCCTGCCATGCCTTCTGTTCTTTTCTCTGGTGATACAACTGCA
ACTGGTGGCGCGGGTAGCGCTTTTGATAAGAATGAGACGCACGCCAGGTC
ACCGGATAGCGATGCTCCTGCAGCTGCAGTCGGTGCTTCTATCACTGCCA
CGATTCATGCAGCGTCTGCTGATGGCGCAGCCAACGCGAATGCTTATACC
GTTGCTGCCGATCTTCCTCCTGCTGCTGCTCTTGCAGTCATAGGCATTGA
CAACGCGAGTGCAGCGATGGCGACGACAGAACACGACGTTGCTCCGTACG
GGGGTCGCTTAGTGCTCTTCGACAGTGCTGCCATTCTGCACGAGGTATTG
CCGTCGCACAACGAGGGCGAACCGCGGATAGCACTGACGGTGTGGATTAG
CGACCGGCGAGAACGGTAGTTACCACACATGGCTGCCAGTTGACGAAAAT
GAGAAAATGGGATAAATTGATTTGTAGACCAGAAAGCACAGGAAAGAGAG
AGCAGCCTTCATGATGCAGCAAGTGATTTCCAACACATATGCAGTCACTT
CATTGGTTCATAAATTGCGAAGCCGAAAGGATGACACCGTCAGCCCAGGA
AACACGTTGCCACTATTCTTCCCGTCAGGCAAATAAATACAGGACTGCAC
ATAACAAGTGCAATGCGACAGAGTGGACCTCCATGCCATGCCATCCAACA
GGATTGAATT
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protein sequence of NO02G00060.1

>NO02G00060.1-protein ID=NO02G00060.1-protein|Name=NO02G00060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=416bp
MVLASIRRAATSQRAEAAAMVGVACVGLGSLISSAQSESVLSDPASEAAY
SYKFPVAFPSVANAIRNGHVIVLDTMLSDRELHAAREDVDILLQQGGGTF
AANANRDSSVRRDSVVWITGQEKGVGPGLKHAVALLRGLAHEFAATPAYD
KSVLWVQSAAQLACYAGDSQAHYTPHLDASTDSIWTLGLSAWLRARAYRE
RTITAILYLNDKNWDKDTMGGCLRCHLPNSSSKTGCDSGGVAVASDGGGS
ALGRMRTKQQPMLQDGDAIDTTATNDVTVPAMPSVLFSGDTTATGGAGSA
FDKNETHARSPDSDAPAAAVGASITATIHAASADGAANANAYTVAADLPP
AAALAVIGIDNASAAMATTEHDVAPYGGRLVLFDSAAILHEVLPSHNEGE
PRIALTVWISDRRER*
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mRNA from alignment at chr2:16593..19879+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G00060.1 ID=NO02G00060.1|Name=NO02G00060.1|organism=Nannochloropsis oceanica|type=mRNA|length=3287bp|location=Sequence derived from alignment at chr2:16593..19879+ (Nannochloropsis oceanica)
CGATTTATTTTTTTGGACGCCCTACTTGTACTGCCTACCCATCGATAAAA
GGGAATACATTCAGGAGGCTCTTGACCAGCACACACGAGCTAGCAACCAA
AGCACCAATTTCTCCACCTTTACTTCTATGTTAGACATACACGCACTTCC
TCTCAACAATTCGGTCCTTCTATGCACACGATCCCCCTAATGATCTGCAG
CGCTTGCAATGCTTCACGTCCCCGCGCGCGAATGGCACGGTTGTCATCCA
GAAATATATTGGCCAAATTTGGACAGCCCCCTTCAACTTCTCCCATCTGG
CCCCCGTTGCCTTCCTCCCCCCCCAACCCTCCGTCCGTGGTTTCCGTCGC
CAGAAAGTCCCTAAAAGCACAGGCCCCATCATCTCCTATCCTATTCCCTC
GCAGATCCAATGTCTCCAGCTGCAGCATAGCAGTTGTGCTCATCGTACTT
ACTGCAGCAGCTCGGGCCGTCCTCATCTTTCCTCCCTCGACTGACAAGCG
CTCCGCAAGGGCAAGCGCTCCTTCGTTTCCGATGGCATTGCAAGCCAAAT
CTAGCTCCCGCAGCATGGGCATGTGAGCCAGGCAATCAGCCACGGCCCTC
GCCCCTGTGTCGCCAATGCCATTAAATCCAAGATAAAATTCGTCCAGACA
CGGCATGCCACCTCCCGCAGCCAGTCCCTCCGCCACCGACGTGGCCCCGC
AGTCGCCCAATTGATTCAGGTGCAAGTCAAGCTTCAGCAGCCTCTTTAAG
GAAATAGAGCCGAGAGCACCTCCTATGTGCAAGGCGGCAATGGTGCCCAG
ATCATTTTGCGCGAGGCTGAGAGAGGTCAATGGTGCACTGCAGGCCCCGC
ATTTCAGGACCTCACATAAAACGGCAATATGATCTTCTCCCTCCCCACCA
CCGCCTCCATAGTCGTCGCCCCCGATTTGATTGGCACGCACGTAGAGCCC
TTGCAAACCAGAGCGAAACCCCCCTCGCTCTAGGGCCTGTGCCAGAGCAA
GGCATCCCTCGCTTCTCAGCTTGTTATCGAACAGATTGAGGGAACGTACC
GTTTGGAAAAAATTGCCCTCCTCCGCGGCTAGGCGCCCCAATGTAAGGAT
AATATTGGGAGTAAGCTCGGCTGAGGATAAGTCCAAGACGCGAAGGGCTT
TACAAAATGGCAAGCGACGCGTGATGATGTCTTCAACGACGACCACAGTT
AATTGCTTCGATGGACGGAAGAAGGACATGCCGTTCGATATCAAATTGGT
CCCATTTTCGTCCTGTGCGGCACCCAACCCCCGAGCTGCCGAGGTCAAGC
GAGCCACATCTCCTGGCCACATGTAAGCGCAGATCTCATAAAGGAGAGCA
TGGGGGAGGGTGGGCAGGGCGACGAGACGTGGAGGTATTGGTGCTGCTCG
AGCGAAAGGAGTAGGAAGAAAAAGTGGTGGTGACGGTAAGCTCATGATGG
AAAGGTTTTAGCCCTTGGCCTATTTTAAACGGGTGTGTGGTGCTTACTTT
TAGAAATTGTAAGCGTGCGGTGAGACACGTTCGACGTCGAAGCCCGCCGG
CGAGATCCAGTCGCTAATCGTTGCGTCGTCATCGCCCAGCAAAATGCAAC
ATGCAAGAAAGCATACGCTTGAAAACTGACCACGCAAAACAAATCCACAT
GCATCGCCAGTCGTCGTCCACATGGTTTTGGCCTCGATCCGCCGAGCTGC
CACGAGCCAGGTAAGTTTGTACTTCCACTGAAAAGCCGTATGCCTTCCCT
TATCTTCCACTCTTCTCTCCCTTTTGCTTTCACTAAGCGGGCCGAGGCCG
CGGCCATGGTGGGAGTGGCGTGTGTGGGCCTGGGTTCATTAATTTCGTCG
GCACAGAGTGAATCTGTGCTCTCAGATCCTGCCAGCGAAGCCGCCTACTC
GTATAAATTTCCCGTGGCTTTTCCCTCTGTGGCAAATGCCATTCGCAACG
GGCACGTGATTGTGCTGGATACGATGTTGAGCGACCGAGAGCTTCATGCT
GCGCGAGAGGACGTGGATATTTTGCTACAACAAGGTGGCGGTACCTTTGC
GGCGAACGCCAATAGGGACTCGAGCGTGCGGCGCGACTCGGTGGTGTGGA
TAACGGGACAAGAAAAAGGGGTCGGACCTGGATTGAAGCATGCCGTCGCG
TTGCTGCGTGGCCTGGCGCACGAGTTTGCGGCAACGCCTGCCTACGATAA
GAGTGTGTTGTGGGTTCAGTCCGCCGCGCAACTGGCATGCTATGCAGGGG
ACAGCCAAGCCCATTATACACCGCATCTGGATGCCTCCACGGATAGCATC
TGGACCCTCGGTTTGAGTGCCTGGCTTCGTGCCCGGGCCTACCGCGAGAG
GACCATAACGGCGATATTGTACTTAAATGATAAGAATTGGGACAAGGATA
CAATGGGCGGCTGCTTGCGATGTCACTTGCCTAATTCTTCTTCCAAGACT
GGTTGTGATTCGGGTGGTGTTGCTGTTGCATCTGATGGTGGTGGTAGTGC
TCTTGGTCGAATGAGGACGAAGCAGCAGCCGATGTTACAAGACGGTGATG
CCATTGACACTACTGCCACAAATGACGTTACCGTGCCTGCCATGCCTTCT
GTTCTTTTCTCTGGTGATACAACTGCAACTGGTGGCGCGGGTAGCGCTTT
TGATAAGAATGAGACGCACGCCAGGTCACCGGATAGCGATGCTCCTGCAG
CTGCAGTCGGTGCTTCTATCACTGCCACGATTCATGCAGCGTCTGCTGAT
GGCGCAGCCAACGCGAATGCTTATACCGTTGCTGCCGATCTTCCTCCTGC
TGCTGCTCTTGCAGTCATAGGCATTGACAACGCGAGTGCAGCGATGGCGA
CGACAGAACACGACGTTGCTCCGTACGGGGGTCGCTTAGTGCTCTTCGAC
AGTGCTGCCATTCTGCACGAGGTATTGCCGTCGCACAACGAGGGCGAACC
GCGGATAGCACTGACGGTGTGGATTAGCGACCGGCGAGAACGGTAGTTAC
CACACATGGCTGCCAGTTGACGAAAATGAGAAAATGGGATAAATTGATTT
GTAGACCAGAAAGCACAGGAAAGAGAGAGCAGCCTTCATGATGCAGCAAG
TGATTTCCAACACATATGCAGTCACTTCATTGGTTCATAAATTGCGAAGC
CGAAAGGATGACACCGTCAGCCCAGGAAACACGTTGCCACTATTCTTCCC
GTCAGGCAAATAAATACAGGACTGCACATAACAAGTGCAATGCGACAGAG
TGGACCTCCATGCCATGCCATCCAACAGGATTGAATT
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Coding sequence (CDS) from alignment at chr2:16593..19879+

>NO02G00060.1 ID=NO02G00060.1|Name=NO02G00060.1|organism=Nannochloropsis oceanica|type=CDS|length=1248bp|location=Sequence derived from alignment at chr2:16593..19879+ (Nannochloropsis oceanica)
ATGGTTTTGGCCTCGATCCGCCGAGCTGCCACGAGCCAGCGGGCCGAGGC
CGCGGCCATGGTGGGAGTGGCGTGTGTGGGCCTGGGTTCATTAATTTCGT
CGGCACAGAGTGAATCTGTGCTCTCAGATCCTGCCAGCGAAGCCGCCTAC
TCGTATAAATTTCCCGTGGCTTTTCCCTCTGTGGCAAATGCCATTCGCAA
CGGGCACGTGATTGTGCTGGATACGATGTTGAGCGACCGAGAGCTTCATG
CTGCGCGAGAGGACGTGGATATTTTGCTACAACAAGGTGGCGGTACCTTT
GCGGCGAACGCCAATAGGGACTCGAGCGTGCGGCGCGACTCGGTGGTGTG
GATAACGGGACAAGAAAAAGGGGTCGGACCTGGATTGAAGCATGCCGTCG
CGTTGCTGCGTGGCCTGGCGCACGAGTTTGCGGCAACGCCTGCCTACGAT
AAGAGTGTGTTGTGGGTTCAGTCCGCCGCGCAACTGGCATGCTATGCAGG
GGACAGCCAAGCCCATTATACACCGCATCTGGATGCCTCCACGGATAGCA
TCTGGACCCTCGGTTTGAGTGCCTGGCTTCGTGCCCGGGCCTACCGCGAG
AGGACCATAACGGCGATATTGTACTTAAATGATAAGAATTGGGACAAGGA
TACAATGGGCGGCTGCTTGCGATGTCACTTGCCTAATTCTTCTTCCAAGA
CTGGTTGTGATTCGGGTGGTGTTGCTGTTGCATCTGATGGTGGTGGTAGT
GCTCTTGGTCGAATGAGGACGAAGCAGCAGCCGATGTTACAAGACGGTGA
TGCCATTGACACTACTGCCACAAATGACGTTACCGTGCCTGCCATGCCTT
CTGTTCTTTTCTCTGGTGATACAACTGCAACTGGTGGCGCGGGTAGCGCT
TTTGATAAGAATGAGACGCACGCCAGGTCACCGGATAGCGATGCTCCTGC
AGCTGCAGTCGGTGCTTCTATCACTGCCACGATTCATGCAGCGTCTGCTG
ATGGCGCAGCCAACGCGAATGCTTATACCGTTGCTGCCGATCTTCCTCCT
GCTGCTGCTCTTGCAGTCATAGGCATTGACAACGCGAGTGCAGCGATGGC
GACGACAGAACACGACGTTGCTCCGTACGGGGGTCGCTTAGTGCTCTTCG
ACAGTGCTGCCATTCTGCACGAGGTATTGCCGTCGCACAACGAGGGCGAA
CCGCGGATAGCACTGACGGTGTGGATTAGCGACCGGCGAGAACGGTAG
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Synonyms
Publications