NO01G05910.2, NO01G05910.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05910.2
Unique NameNO01G05910.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3257
Alignment locationchr1:1669538..1672897 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1669538..1672897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G05910.2 vs.
Match: XP_005854650.1 (hypothetical protein NGA_0195700 [Nannochloropsis gaditana CCMP526]; EKU21707.1 hypothetical protein NGA_0195700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 108.6 bits (270), Expect = 2.400e-20
Identity = 47/120 (39.17%), Postives = 75/120 (62.50%), Query Frame = 0
Query:   94 VSEEGHTRLLQEAWGDPEILRTLMDDLPLFDVIKPLRALKEKKTLTPSDGFEAVVALKDTMGKLLTSLQSIRDPESFAEKIYKYATSEDPKWKSLLARIEEGDTTSHLESQQFLLNEEIG 214
            ++ + H   L+  W DP + R L D  P     KPLR L  K+ LTP DG +AV   K+ M K+L +++++RDPE  A  ++ Y+  +DP+W SL+AR++ G+  + LE QQ++L+ E+G
Sbjct:    2 LTNKAHVDELKATWSDPVVFRFLRDQTPFLKAFKPLRPLFSKEALTPQDGVDAVETFKNAMLKVLATIEAVRDPEGMATLMFNYSNLQDPEWVSLIARLQAGEKEAQLELQQYILDRELG 121          
The following BLAST results are available for this feature:
BLAST of NO01G05910.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854650.12.400e-2039.17hypothetical protein NGA_0195700 [Nannochloropsis ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05910NO01G05910Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05910.2NO01G05910.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05910.2.cds1NO01G05910.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05910.2.cds2NO01G05910.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05910.2 ID=NO01G05910.2|Name=NO01G05910.2|organism=Nannochloropsis oceanica|type=mRNA|length=3257bp
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTTGTCAAAGAAAAAAT
ACAGTAAATGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGAG
ACAGAGTATGTGGTGATTGAAGCTGTCTCCCGATAATCGATCAACGGCGA
GTCACATTTAAGCCCTGATCGCCAGAAAGTGCATTTTTAAAAACAAATAC
CGCGGATGGACGCCAATAAATACCTCTACATCGACCCATGCATATATTTG
TGCAGTATAATGTGTAAGTAACGCACGCATACACTTCTCACAAAGTATCT
AACGACACATGACTACACGAATGTAAGGGACGCCTCATACTTTGATGCTG
GACAGTAATCAATATACATTCTGTATGCTAATTCTGTACTGTGTGCATGC
CGTTAGTATCCTCTCAAGTAGACCAAAGAGACGCAATTATGGTAGTGAAT
TACTTGGCGAGTATATGTGTTGATGAGATTCTGGAAAAAAAGGTAAACCA
TCATGTCTACAATTTTCCAATTTGGAACCATACTTTCTGTTATCACAATA
GTTCAAGGACAGAGGAGCACTTTGCTTATAGAAAACTATTGTGACAAGCT
TTATGATTGTTCTCATGACTGAATTTTATATATATGTCTTATACGTTTAT
CGAGAAGATTCATGTAATAATAATTATCGAGAAGATTCATGTGACAATAA
TGTCTAAAGATTCATGTAATTTGAAAATACTAAATTATGGACATATTTAA
TTCCAAATCATATGTGTGGTCGAATAAAGCATATTCTTACATCGTTGGTA
AATTATGCACGGGAAGAGGGGAATAATGATCGGGAAACGAAGCTAAAACC
ATAGATCTTTGCCTGACAAATTTCTTAAATCAATAAAGTATCTTTATCCA
ATTACAAGATTCAATAAGAACTCTCATATCAACGAGTGAGGATTCGATAC
TATAGGAAAGCAAGCTTGATTATAACTATTGAACAACAATACACATGCCC
CTGAAAGTATCTCCTAGCGACATCAATTGCCAGGTCTATGAGTAGCGCTG
ATCCATGACGAGTCTCTACCATGCAGAGATTCTTTATTTTTTACACTTTC
TGTTGTTGGTCATGGGATAAGCGCTAATCTTGGATTTATCAAGTGGCATT
GCTTAAAATTGCTCATCAACACAGACAACATTATTTTTTTTCGGTCGTTC
CCTGGCCCACTAATACATTATTATATGTAGTGGAGAAGATTCATGTAAAA
AATAGAGCATCTATATAGAATATTCACCTGAATAAAGATTCAATTTGGGT
CAAATATATCCGAGCTAAATAAAACAATTGGCAGCACAGATCGCCAGGTC
GAAGTGCTTCGCCCGAGACGAGTAATATTCGGATTTTGGAAACAGGAATC
AATTAAAATCACTGTATATAATCCTTTCTCCCAACAAAAGCTAGACTGTA
TATAAAGATGTGAAATATAAATTTGTATACGGAGGAGAGCTATGCTGTCC
ATCTCAATTTATCTTACAATTGAGACAGTGAAGGTTTTGCACCGAACTCG
TACACAGTAAGCAGCGTTCTCCTTTTTCTCGATTCTCATCCAGTGCTTCT
TTCTGTCAAAAAATTGATTTGTGCGATTCTGCGGCTTACACAAATTCCTT
TTTCCACCGATGCGTTGCATTTATGACCCAACTGCAGTACAAATCCTTGC
ATGTGGTGGCCTTGCGGCTTCGCGATGCAATGGTATGCTTACAAATATTG
ACACAACTGACTTTGTGTCCCCCCCTTCTATGTATTTATCTCCCATCCTA
GGCTCCGCTTTGGTCATTTGTCCTGCATTCCTATCTCACACGGCTAGACC
ATGACGCGTCAATTCTCTACAGCTCTCATCCTTGTCGCTAGCGTGGTATT
GCCGACGGCGGTGCAAGGAAACATGAAAACAGGGATTTTTAATAAAATCG
CGGAGACTACACGCGATTTGCCGGTGACAACAGGTGGAGCCTCCCCATTT
GGAGAGCAAGTGGGTAGATTCTCCCTCGACGGGTTCATGGACACATTCGA
AGAGTTGACAGACAAACAATGGGGGACTCCGAGTACAACTCTTGATCTTG
ACTTGATGGGCCTCTTGCGCAATGTCTTTGTATCGGAAGAAGGTCATACT
CGGCTGTTGCAAGAGGCGTGGGGAGATCCTGAAATCCTTCGTACCCTTAT
GGATGATTTGCCCCTATTCGATGTTATTAAACCTTTGCGAGCGCTCAAGG
AGAAGAAAACATTGACACCTAGCGATGGATTCGAGGCTGTAGTGGCTCTC
AAAGATACCATGGGCAAGCTCCTTACGTCATTGCAGAGTATCCGTGACCC
AGAAAGTTTTGCTGAGAAGATTTATAAATATGCAACCAGCGAGGACCCAA
AATGGAAATCTTTGTTGGCACGAATCGAAGAAGGGGACACGACTTCTCAT
CTGGAGTCCCAGCAATTCCTTTTGAATGAGGAAATTGGTGACCGTAAGTA
ATGAATGTAGTGGGCATACATATACATCTATCCAATGGCCATGTCAGGAT
TTCATTGTGCCCTCTACCTCTCAGCCTTTATTCAATTGCAGTTTCCGATA
CAATGATTCTAAGTCACTACACCCACATATAATCTATACCAGTTATCGAC
CTAAAAGCTCTCGGTTTTGGTGGAGAATTACCCTCCCTAGTGACTAAAGC
GATCGAGACTACCAAACAAAACGAGCCATTGGTCTGGGGGAGTGTCTTAT
CTGACCCTATTGCGAGGCGCTTCCTGGACAATCCTATCCTGGCCGTCCAA
GAAGCGGTAGATGCTGCATCGGACTATGTGAAGAATGCGAAAGCGAGTGC
CCAGTAGCGGCCTAATTTTATCTTATGAGAAAATATGTGTGAAATACATA
CCATATTTCTATATCTATCTATTTTGATGTGATGTCATTCGCATTGCAGC
TAGGACCGATATATCGCATTTTATCAATACCTATTACACACAGATCAAAG
ACAGCAAAATTAGATGGATGATGGGCAGCAGAAAACTAGAGAAGATAAAC
GAGGGATGATATGCAGGTTCATGTGACATATTTGCATACGGATGTGCAAG
GGAAAAAGTGGGTGCGGATGTACATCTTTGGAGTCCTGCTGACAAAAAGT
ATTTGGTGTGATGTGTCAACAGAAGCAGACAAAGGAAAAGACGCAAACGT
ACTAAAAGATAAACTCATATCTGAGGCAAGAATCTTGGCCCAAGATATCC
AGGCCGA
back to top

protein sequence of NO01G05910.2

>NO01G05910.2-protein ID=NO01G05910.2-protein|Name=NO01G05910.2|organism=Nannochloropsis oceanica|type=polypeptide|length=217bp
MTRQFSTALILVASVVLPTAVQGNMKTGIFNKIAETTRDLPVTTGGASPF
GEQVGRFSLDGFMDTFEELTDKQWGTPSTTLDLDLMGLLRNVFVSEEGHT
RLLQEAWGDPEILRTLMDDLPLFDVIKPLRALKEKKTLTPSDGFEAVVAL
KDTMGKLLTSLQSIRDPESFAEKIYKYATSEDPKWKSLLARIEEGDTTSH
LESQQFLLNEEIGDRK*
back to top

mRNA from alignment at chr1:1669538..1672897+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05910.2 ID=NO01G05910.2|Name=NO01G05910.2|organism=Nannochloropsis oceanica|type=mRNA|length=3360bp|location=Sequence derived from alignment at chr1:1669538..1672897+ (Nannochloropsis oceanica)
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTTGTCAAAGAAAAAAT ACAGTAAATGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGAG ACAGAGTATGTGGTGATTGAAGCTGTCTCCCGATAATCGATCAACGGCGA GTCACATTTAAGCCCTGATCGCCAGAAAGTGCATTTTTAAAAACAAATAC CGCGGATGGACGCCAATAAATACCTCTACATCGACCCATGCATATATTTG TGCAGTATAATGTGTAAGTAACGCACGCATACACTTCTCACAAAGTATCT AACGACACATGACTACACGAATGTAAGGGACGCCTCATACTTTGATGCTG GACAGTAATCAATATACATTCTGTATGCTAATTCTGTACTGTGTGCATGC CGTTAGTATCCTCTCAAGTAGACCAAAGAGACGCAATTATGGTAGTGAAT TACTTGGCGAGTATATGTGTTGATGAGATTCTGGAAAAAAAGGTAAACCA TCATGTCTACAATTTTCCAATTTGGAACCATACTTTCTGTTATCACAATA GTTCAAGGACAGAGGAGCACTTTGCTTATAGAAAACTATTGTGACAAGCT TTATGATTGTTCTCATGACTGAATTTTATATATATGTCTTATACGTTTAT CGAGAAGATTCATGTAATAATAATTATCGAGAAGATTCATGTGACAATAA TGTCTAAAGATTCATGTAATTTGAAAATACTAAATTATGGACATATTTAA TTCCAAATCATATGTGTGGTCGAATAAAGCATATTCTTACATCGTTGGTA AATTATGCACGGGAAGAGGGGAATAATGATCGGGAAACGAAGCTAAAACC ATAGATCTTTGCCTGACAAATTTCTTAAATCAATAAAGTATCTTTATCCA ATTACAAGATTCAATAAGAACTCTCATATCAACGAGTGAGGATTCGATAC TATAGGAAAGCAAGCTTGATTATAACTATTGAACAACAATACACATGCCC CTGAAAGTATCTCCTAGCGACATCAATTGCCAGGTCTATGAGTAGCGCTG ATCCATGACGAGTCTCTACCATGCAGAGATTCTTTATTTTTTACACTTTC TGTTGTTGGTCATGGGATAAGCGCTAATCTTGGATTTATCAAGTGGCATT GCTTAAAATTGCTCATCAACACAGACAACATTATTTTTTTTCGGTCGTTC CCTGGCCCACTAATACATTATTATATGTAGTGGAGAAGATTCATGTAAAA AATAGAGCATCTATATAGAATATTCACCTGAATAAAGATTCAATTTGGGT CAAATATATCCGAGCTAAATAAAACAATTGGCAGCACAGATCGCCAGGTC GAAGTGCTTCGCCCGAGACGAGTAATATTCGGATTTTGGAAACAGGAATC AATTAAAATCACTGTATATAATCCTTTCTCCCAACAAAAGCTAGACTGTA TATAAAGATGTGAAATATAAATTTGTATACGGAGGAGAGCTATGCTGTCC ATCTCAATTTATCTTACAATTGAGACAGTGAAGGTTTTGCACCGAACTCG TACACAGTAAGCAGCGTTCTCCTTTTTCTCGATTCTCATCCAGTGCTTCT TTCTGTCAAAAAATTGATTTGTGCGATTCTGCGGCTTACACAAATTCCTT TTTCCACCGATGCGTTGCATTTATGACCCAACTGCAGTACAAATCCTTGC ATGTGGTGGCCTTGCGGCTTCGCGATGCAATGGTATGCTTACAAATATTG ACACAACTGACTTTGTGTCCCCCCCTTCTATGTATTTATCTCCCATCCTA GGCTCCGCTTTGGTCATTTGTCCTGCATTCCTATCTCACACGGCTAGACC ATGACGCGTCAATTCTCTACAGCTCTCATCCTTGTCGCTAGCGTGGTATT GCCGACGGCGGTGCAAGGAAACATGAAAACAGGGATTTTTAATAAAATCG CGGAGACTACACGCGATTTGCCGGTGACAACAGGTGGAGCCTCCCCATTT GGAGAGCAAGTGGGTAGATTCTCCCTCGACGGGTTCATGGACACATTCGA AGAGTTGACAGACAAACAATGGGGGACTCCGAGTACAACTCTTGATCTTG ACTTGATGGGCCTCTTGCGCAATGTCTTTGTATCGGAAGAAGGTCATACT CGGCTGTTGCAAGAGGCGTGGGGAGATCCTGAAATCCTTCGTACCCTTAT GGATGATTTGCCCCTATTCGATGTTATTAAACCTTTGCGAGCGCTCAAGG AGAAGAAAACATTGACACCTAGCGATGTAAGTGAGATAGTGTAAAAGGAG TGAGTATACCAATATAACGATCAGCAGGCACATGGAAATACTTGGCGCAA TTTTCAAAGCAAATCTTCACGCATCACAGGGATTCGAGGCTGTAGTGGCT CTCAAAGATACCATGGGCAAGCTCCTTACGTCATTGCAGAGTATCCGTGA CCCAGAAAGTTTTGCTGAGAAGATTTATAAATATGCAACCAGCGAGGACC CAAAATGGAAATCTTTGTTGGCACGAATCGAAGAAGGGGACACGACTTCT CATCTGGAGTCCCAGCAATTCCTTTTGAATGAGGAAATTGGTGACCGTAA GTAATGAATGTAGTGGGCATACATATACATCTATCCAATGGCCATGTCAG GATTTCATTGTGCCCTCTACCTCTCAGCCTTTATTCAATTGCAGTTTCCG ATACAATGATTCTAAGTCACTACACCCACATATAATCTATACCAGTTATC GACCTAAAAGCTCTCGGTTTTGGTGGAGAATTACCCTCCCTAGTGACTAA AGCGATCGAGACTACCAAACAAAACGAGCCATTGGTCTGGGGGAGTGTCT TATCTGACCCTATTGCGAGGCGCTTCCTGGACAATCCTATCCTGGCCGTC CAAGAAGCGGTAGATGCTGCATCGGACTATGTGAAGAATGCGAAAGCGAG TGCCCAGTAGCGGCCTAATTTTATCTTATGAGAAAATATGTGTGAAATAC ATACCATATTTCTATATCTATCTATTTTGATGTGATGTCATTCGCATTGC AGCTAGGACCGATATATCGCATTTTATCAATACCTATTACACACAGATCA AAGACAGCAAAATTAGATGGATGATGGGCAGCAGAAAACTAGAGAAGATA AACGAGGGATGATATGCAGGTTCATGTGACATATTTGCATACGGATGTGC AAGGGAAAAAGTGGGTGCGGATGTACATCTTTGGAGTCCTGCTGACAAAA AGTATTTGGTGTGATGTGTCAACAGAAGCAGACAAAGGAAAAGACGCAAA CGTACTAAAAGATAAACTCATATCTGAGGCAAGAATCTTGGCCCAAGATA TCCAGGCCGA
back to top

Coding sequence (CDS) from alignment at chr1:1669538..1672897+

>NO01G05910.2 ID=NO01G05910.2|Name=NO01G05910.2|organism=Nannochloropsis oceanica|type=CDS|length=651bp|location=Sequence derived from alignment at chr1:1669538..1672897+ (Nannochloropsis oceanica)
ATGACGCGTCAATTCTCTACAGCTCTCATCCTTGTCGCTAGCGTGGTATT
GCCGACGGCGGTGCAAGGAAACATGAAAACAGGGATTTTTAATAAAATCG
CGGAGACTACACGCGATTTGCCGGTGACAACAGGTGGAGCCTCCCCATTT
GGAGAGCAAGTGGGTAGATTCTCCCTCGACGGGTTCATGGACACATTCGA
AGAGTTGACAGACAAACAATGGGGGACTCCGAGTACAACTCTTGATCTTG
ACTTGATGGGCCTCTTGCGCAATGTCTTTGTATCGGAAGAAGGTCATACT
CGGCTGTTGCAAGAGGCGTGGGGAGATCCTGAAATCCTTCGTACCCTTAT
GGATGATTTGCCCCTATTCGATGTTATTAAACCTTTGCGAGCGCTCAAGG
AGAAGAAAACATTGACACCTAGCGATGGATTCGAGGCTGTAGTGGCTCTC
AAAGATACCATGGGCAAGCTCCTTACGTCATTGCAGAGTATCCGTGACCC
AGAAAGTTTTGCTGAGAAGATTTATAAATATGCAACCAGCGAGGACCCAA
AATGGAAATCTTTGTTGGCACGAATCGAAGAAGGGGACACGACTTCTCAT
CTGGAGTCCCAGCAATTCCTTTTGAATGAGGAAATTGGTGACCGTAAGTA
A
back to top
Synonyms
Publications