NO01G05900.1, NO01G05900.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G05900.1
Unique Name	NO01G05900.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	4025
Alignment location	chr1:1664444..1669463 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:1664444..1669463 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO01G05900.1 vs.
Match: EWM24617.1 (hypothetical protein Naga_100926g1 [Nannochloropsis gaditana])

HSP 1 Score: 1533.5 bits (3969), Expect = 0.000e+0
Identity = 744/1130 (65.84%), Postives = 898/1130 (79.47%), Query Frame = 0

Query:   12 DAATAGGKQETSSSRFMKRSVVLGLVAGVLVLGAIFGGIFGARAVEKKKRVPIPVEAVTYAMVTEGFAKGAVVPVP-NTLNSAAAKATSKATTTATTTADKAPAGTGLGGEHSIFSYEYWFGEGGIGAVPMFDPTPLILPPDAVTVPTWTTAFPNGNFANTEGRVVCYAKTGQDVIDMVSGDESACEVIILTNDRFTPYAISKTMNVTKSKLLVGRPIYAPMLNATNRVERLFDILPGGRLETRNVNMVRGFGRNLGLNGNEINLVVGSIARVQVGGQFTATACMFRERNNTLPSFIDEIRRKIRTPTARNRQFGQLILVLGGTITLTACRSIRFRPFGNGILNAMVIGRDINVVAGMCTLIGHNTASASLWSVNYFIVGTLGLAMGGTLTFVGGNNIGANLLQLQAGVMSNFGTLAGSLVTVGYGYTSVKGMLLRFVAGQFGTVAGVSIMIGFIRGSADGCKCQGGAGATHATFTGVNNRHAGAETGYSINGAFFGAGGTNYVASGTNFVQAVPRIGTYLTASSNGVGLASFIGAGTSTNSYTAQLSAQMMRFNAGVATDLFQGAGWHTNINATRFSIQLVNAFVGAGNQLFVGFGGAAFIRTYSLSVRALQWNPSTPYTYTVAGVGTRSSGTRSQNLILFKGGTTRYIFNKTSRTVTKISSPQVQKTPSPT----SMRRRGLVRKRAVEAEDIAHVPTTMGSWLTSIVDAAGGFDPSIENKLVVLQSTIINRQWKTPPHPSKFRGRKMMEHLGGYPRILFDGLIDLNGGESIETPGLVSSNNSACFLCNVGPGNTADHVGGPDQCEIQDVCGSSRNPAEIYERAQNATTTNILPPHVDRSMGKVDKDGNPIMANTWILWHELVVYCHSSDPETDDSSINSNCLSADYIKEVIKGYILMDSNKNEYQITVSDGNVHAAADAFAMNDTTLDDLKMGVSPEWNQDCQGWTKYDIRLLASDPEVEQHILDLMDGFVEDPSDLQATILENADPSADLQPCGITIKELGEQRIPSLAKMPAFKPSTKFTLGPAMWISDGVSIEPVKFLTPGETYTVYVQNFPKGTKIDLTLMEGVALTGPTVASIDSFDEDGISEVRWTVPRDIM--DGRKRYLKAAISNIPALFTFSQVFYVD 1135
            +A   G +Q+   SRF K++ VL LV G L++GA+FGG+FG+RAVEKK+RVPI VE VTYAMVTEGF   AVVPVP N L  A   + S    T   T DKAPAG  L GE SIFS++YWFG+ GI  +PMFDP PL+LPP+A T+P+W +A     F NTEGRV+CYA TG++VI+MVSGDES CEVI+LTNDRFTPY+I K MNVTK K+++GRPIYAPMLN TN++ RLF++ PGG+LETR+V +VRGFGRN+GLNGNEINL +G+I RVQVGGQF AT CMFRERNNT P+F+DE+RRK+ TPTARNRQFGQ+ LVLGG + L  CRS+RFRPFGNG+LN MVIGRDINVVAG  TLIGH + S+SLWS NYF+ G L   MGG LTF+GGNNIGANLLQ+Q G M NFGT AG LVTVGYGYT+VKG+L R +AGQFGT+AGVS+ I F+RGSADG +   GAG THATFTGVNNR  G ETGY I+G  FG GG+NYV +G++F QA+P+  + +T S +GVGL S+ GAG+STNSY    SA + RFN G+ TD F GAGWH NIN TRFS QL N+F+G GNQ +VGFGGAAFIR+YS S R  Q+   T YT+TVAG G  SSGT+ QNL+L KGG TRYI NKT+ TVTKIS+P VQKT +PT      RRR + RKRAV+ ED+ ++P TMGSWL +IVDA GG DP ++NK+V+LQ+TI+ R+ K PPHP  FR R++ E  GGY +IL DGL+D  G E++ETPGL+S+NNS CFLCNVGPGNTADH+GGP  CE++DVCG S NPAEIY RAQ +TTTNILPP +D+S+G VD+DGNPI+++TWILWHE+VVYCHS+DPET+DSSI   CL+  YIK+VI+GYIL+D+ KNEYQ+ VS+  VHA+ADAF   D TLDDLK+ VSPEWN +CQGWTKYDIR++A+DPEVEQHILD+ +GFVEDPSDL+ TI+ENADPSA+LQPC I I E GEQR PS+  MPAFKPS +  +GP + I+DGVSIEPVKFL PGETY VY+QNFPKG  I++ LM+G+  TGP VA++DSF  DGI+EV WTVPRDI+  DG K YLKA I N+ A FT+SQVFY D
Sbjct:    9 EAGNGGKEQQLRPSRFTKKTAVLALVGGTLIVGAVFGGVFGSRAVEKKRRVPIKVEDVTYAMVTEGFMNAAVVPVPQNILQKANTSSASSPALTTLATGDKAPAGNPLQGETSIFSFDYWFGDQGIAGIPMFDPMPLVLPPEATTIPSWVSA---AQFRNTEGRVLCYASTGKEVIEMVSGDESPCEVIVLTNDRFTPYSIDKIMNVTKPKIIIGRPIYAPMLNCTNQIPRLFEVYPGGQLETRSVILVRGFGRNVGLNGNEINLTIGTIIRVQVGGQFMATGCMFRERNNTFPNFLDEVRRKLETPTARNRQFGQMTLVLGGNLVLLGCRSLRFRPFGNGVLNTMVIGRDINVVAGTATLIGHCSGSSSLWSTNYFMTGALATVMGGVLTFIGGNNIGANLLQVQGGTMVNFGTFAGVLVTVGYGYTTVKGLLFRSIAGQFGTIAGVSVQIAFVRGSADGVRFVAGAGHTHATFTGVNNRQTGVETGYMISGCLFGVGGSNYVGAGSSFFQAIPKASSAVTDSKSGVGLTSYYGAGSSTNSYVPGFSAILARFNTGIGTDFFMGAGWHNNINCTRFSYQLANSFIGLGNQGYVGFGGAAFIRSYSASARVYQYKYPTIYTFTVAGTGVGSSGTKGQNLVLTKGGITRYIHNKTTNTVTKISTPHVQKTLAPTRAPGGRRRRTVARKRAVQTEDLKNIPPTMGSWLKNIVDATGGLDPGLQNKIVMLQTTILERKVKLPPHPKHFRDRRLKERSGGYAKILADGLVDFEGSEAVETPGLISANNSDCFLCNVGPGNTADHIGGPGACEVKDVCGDSNNPAEIYARAQESTTTNILPPALDKSLGNVDEDGNPILSDTWILWHEMVVYCHSTDPETEDSSITRGCLTEQYIKDVIRGYILLDNVKNEYQMAVSESGVHASADAFP--DPTLDDLKVAVSPEWNPECQGWTKYDIRMVANDPEVEQHILDIFEGFVEDPSDLETTIIENADPSAELQPCAIRITEKGEQRYPSINSMPAFKPSRRLMIGPDVVIADGVSIEPVKFLYPGETYVVYLQNFPKGATIEVMLMDGLVQTGPVVATLDSFAGDGIAEVSWTVPRDIIVNDG-KYYLKAQIKNLAAFFTYSQVFYFD 1132

The following BLAST results are available for this feature:

BLAST of NO01G05900.1 vs.

BLAST of NO01G05900.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM24617.1	0.000e+0	65.84	hypothetical protein Naga_100926g1 [Nannochloropsi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO01G05900	NO01G05900	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO01G05900.1	NO01G05900.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO01G05900.1.cds1	NO01G05900.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05900.1.cds2	NO01G05900.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05900.1.cds3	NO01G05900.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05900.1.cds4	NO01G05900.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05900.1.cds5	NO01G05900.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05900.1.cds6	NO01G05900.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05900.1.cds7	NO01G05900.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05900.1.cds8	NO01G05900.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05900.1.cds9	NO01G05900.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:1664444..1669463-
coding sequence from alignment at chr1:1664444..1669463-

mRNA sequence

>NO01G05900.1 ID=NO01G05900.1|Name=NO01G05900.1|organism=Nannochloropsis oceanica|type=mRNA|length=4025bp
ATGGTCTCTTCTGCAGTAGAGGGACCAGCGAACGATGCGGCCACAGCGGG
CGGAAAGCAAGAAACATCATCTTCCCGTTTTATGAAGAGATCCGTAGTGC
TAGGGCTTGTGGCAGGTGTGCTGGTTCTGGGGGCTATCTTTGGCGGCATC
TTTGGGGCGCGGGCTGTCGAGAAGAAGAAGCGCGTACCCATTCCCGTGGA
GGCTGTGACATACGCAATGGTGACGGAAGGATTCGCGAAGGGGGCTGTAG
TGCCTGTTCCGAATACCCTCAATAGCGCAGCGGCTAAAGCAACGTCGAAA
GCAACGACGACAGCAACAACGACAGCTGACAAGGCCCCCGCAGGAACTGG
CCTCGGTGGTGAGCATTCCATCTTTAGCTACGAATATTGGTTCGGTGAAG
GTGGTATCGGAGCTGTCCCGATGTTCGACCCTACGCCTTTGATACTCCCA
CCCGATGCTGTCACGGTGCCCACATGGACAACGGCTTTTCCAAATGGTAA
CTTCGCCAATACCGAAGGTCGCGTGGTGTGCTACGCCAAGACTGGACAAG
ACGTGATCGACATGGTTAGCGGAGACGAGAGCGCTTGTGAAGTAATTATC
CTGACGAACGACCGCTTCACGCCTTATGCTATTTCCAAAACGATGAACGT
AACCAAATCCAAGCTCCTCGTTGGTCGACCCATTTATGCACCCATGCTGA
ACGCCACAAATCGTGTAGAACGCCTCTTTGACATTCTTCCTGGTGGACGC
CTGGAGACTCGTAACGTGAATATGGTGCGTGGCTTCGGTCGCAATTTAGG
TCTGAATGGAAACGAAATCAACCTTGTGGTTGGTAGCATTGCCCGTGTGC
AAGTGGGTGGGCAATTTACGGCAACCGCTTGTATGTTTCGGGAGCGAAAT
AACACGCTTCCTAGCTTCATCGATGAGATCCGACGAAAGATCCGAACACC
GACAGCCCGCAACCGTCAGTTTGGTCAACTGATTTTGGTTCTAGGTGGAA
CCATCACCCTCACAGCATGCCGCTCAATTCGATTCCGTCCATTCGGAAAC
GGAATCCTGAATGCGATGGTCATAGGACGTGATATCAATGTAGTGGCTGG
CATGTGTACACTTATTGGCCACAACACTGCATCAGCAAGCTTATGGAGTG
TCAACTACTTCATAGTTGGTACTCTAGGCTTAGCCATGGGTGGAACCCTG
ACATTCGTGGGCGGGAACAATATCGGCGCCAATTTGCTACAACTTCAAGC
AGGGGTGATGTCCAATTTCGGAACACTCGCTGGATCACTGGTTACCGTCG
GGTATGGATATACATCAGTCAAGGGAATGCTACTCAGATTTGTTGCGGGG
CAATTCGGGACTGTGGCGGGTGTCTCCATCATGATCGGGTTTATCAGAGG
CAGTGCCGATGGCTGTAAATGCCAAGGTGGTGCCGGAGCAACTCATGCTA
CATTTACGGGGGTCAATAATAGGCACGCTGGAGCTGAGACAGGCTATTCT
ATCAATGGGGCTTTCTTTGGGGCCGGTGGAACTAATTATGTAGCATCCGG
CACGAACTTCGTCCAAGCTGTCCCCAGGATTGGAACATATCTCACGGCTT
CTTCAAATGGTGTTGGGCTGGCCAGTTTTATAGGTGCAGGAACTTCTACC
AACTCTTACACCGCTCAATTAAGTGCACAGATGATGCGGTTCAATGCTGG
CGTTGCAACTGATCTCTTTCAAGGCGCTGGATGGCACACTAATATCAACG
CCACCCGGTTCAGCATACAGCTCGTCAACGCTTTTGTTGGAGCCGGCAAC
CAGCTCTTTGTAGGCTTTGGAGGAGCAGCTTTCATCCGTACTTATTCTCT
ATCAGTGCGAGCTCTACAATGGAATCCTAGCACACCCTATACTTATACAG
TGGCTGGCGTGGGTACTAGATCCTCCGGAACTCGAAGCCAGAACCTTATT
TTATTTAAGGGCGGTACCACTCGTTATATCTTCAACAAAACAAGTCGTAC
AGTCACAAAGATCAGCTCACCTCAAGTACAAAAGACACCATCCCCGACTT
CTATGAGGCGGAGGGGACTGGTTCGGAAGCGTGCTGTCGAAGCTGAGGAT
ATTGCCCATGTACCCACCACCATGGGCTCCTGGCTTACAAGTATCGTTGA
TGCCGCGGGTGGCTTTGATCCTAGCATTGAGAACAAGCTGGTTGTACTTC
AAAGCACCATCATCAACAGGCAATGGAAAACCCCTCCTCATCCTAGCAAA
TTCAGGGGTCGAAAGATGATGGAGCATTTAGGTGGATATCCCAGAATCCT
GTTTGACGGATTGATTGACTTGAACGGCGGTGAATCTATTGAGACTCCTG
GTTTGGTCTCTTCCAACAACTCTGCCTGCTTCCTTTGCAATGTCGGTCCT
GGTAATACGGCTGATCACGTGGGTGGCCCCGACCAATGCGAGATTCAGGA
TGTCTGCGGATCTTCTCGCAATCCTGCCGAAATCTATGAGAGAGCTCAAA
ATGCGACGACGACAAACATTCTTCCTCCTCATGTGGATAGAAGTATGGGG
AAGGTAGACAAGGATGGGAACCCTATCATGGCAAATACATGGATTTTGTG
GCACGAGTTAGTCGTCTATTGCCATTCCTCTGACCCTGAAACGGACGACA
GCAGCATCAACAGCAATTGTCTGAGCGCAGACTACATCAAGGAAGTGATC
AAGGGTTATATCCTCATGGACAGTAACAAGAATGAGTATCAGATTACGGT
GAGCGACGGCAACGTGCATGCTGCAGCTGATGCGTTCGCGATGAATGATA
CGACGCTGGATGACCTCAAGATGGGCGTTTCTCCGGAGTGGAACCAGGAC
TGCCAAGGCTGGACTAAGTACGACATTCGCCTCTTGGCAAGCGATCCAGA
GGTAGAACAGCATATCTTGGATCTCATGGACGGCTTCGTGGAGGATCCTT
CTGATCTGCAAGCTACCATCCTTGAAAACGCCGACCCTTCTGCGGATCTG
CAACCCTGTGGCATCACTATTAAGGAATTGGGCGAACAGAGGATTCCTTC
GCTGGCGAAAATGCCGGCTTTCAAGCCGTCAACGAAGTTTACACTCGGGC
CTGCAATGTGGATCTCAGATGGGGTATCGATTGAGCCTGTGAAATTCCTT
ACTCCCGGTGAAACATACACGGTGTATGTGCAGAATTTCCCCAAAGGCAC
CAAGATCGACCTGACACTTATGGAAGGTGTGGCGCTGACCGGCCCTACTG
TGGCAAGCATTGACTCGTTTGACGAAGACGGCATTTCAGAGGTCCGCTGG
ACAGTGCCGAGGGATATCATGGACGGACGCAAACGGTACTTGAAAGCGGC
AATCAGCAATATTCCGGCCTTATTCACTTTCTCCCAAGTGTTTTACGTCG
ATAGCGATAATCGCATGTAGGAGAACTGATAAGACAGACTGGTGCACCTG
AAGCATTGGACTTGGTGATCCGACGTTTTATAGGTAGAAAGGCAGGTTAT
GTGAGCCTTGAGCAGTACACTTTCGCGAATACTTATATATCTGTAGGCAT
ATATATACATATATGTTACATTAAGTGATGGAAATCATTAACTTATCTCC
ATTCTGATCGAAGAACGGGGATAGCCTTTGTTGGAATTTACTCCGACATT
AATTTTGTCGGTGGAATCGTTAGGGCTACGAGGTCGCATGTATGCCGTCG
CACCACCAATGTGGCACAACCATCGGGGATAAAACATATAATAACCCACA
GGGTGCCTATTTGTATTCCACATTTAAGACTATCGAGCATACAGCCGCAT
CTTGAAAGGAAGTAGGGATTGACCTACACAATGGAGCTTGACGTGCGTAG
GTCCAGGGCACAATCGGTCAAACAATACATTTTTTTATGTAGACGCACAG
AGTCGCTGGCTCTGTCGAATTCATAGAAAAGAATCAACTCAACTTAACTC
AAAGCAACACTTACTGAAGTCCGCTACATTCGATCACTCCCCACCATATG
TATATACCGCACGGACTATACATGA

protein sequence of NO01G05900.1

>NO01G05900.1-protein ID=NO01G05900.1-protein|Name=NO01G05900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1140bp
MVSSAVEGPANDAATAGGKQETSSSRFMKRSVVLGLVAGVLVLGAIFGGI
FGARAVEKKKRVPIPVEAVTYAMVTEGFAKGAVVPVPNTLNSAAAKATSK
ATTTATTTADKAPAGTGLGGEHSIFSYEYWFGEGGIGAVPMFDPTPLILP
PDAVTVPTWTTAFPNGNFANTEGRVVCYAKTGQDVIDMVSGDESACEVII
LTNDRFTPYAISKTMNVTKSKLLVGRPIYAPMLNATNRVERLFDILPGGR
LETRNVNMVRGFGRNLGLNGNEINLVVGSIARVQVGGQFTATACMFRERN
NTLPSFIDEIRRKIRTPTARNRQFGQLILVLGGTITLTACRSIRFRPFGN
GILNAMVIGRDINVVAGMCTLIGHNTASASLWSVNYFIVGTLGLAMGGTL
TFVGGNNIGANLLQLQAGVMSNFGTLAGSLVTVGYGYTSVKGMLLRFVAG
QFGTVAGVSIMIGFIRGSADGCKCQGGAGATHATFTGVNNRHAGAETGYS
INGAFFGAGGTNYVASGTNFVQAVPRIGTYLTASSNGVGLASFIGAGTST
NSYTAQLSAQMMRFNAGVATDLFQGAGWHTNINATRFSIQLVNAFVGAGN
QLFVGFGGAAFIRTYSLSVRALQWNPSTPYTYTVAGVGTRSSGTRSQNLI
LFKGGTTRYIFNKTSRTVTKISSPQVQKTPSPTSMRRRGLVRKRAVEAED
IAHVPTTMGSWLTSIVDAAGGFDPSIENKLVVLQSTIINRQWKTPPHPSK
FRGRKMMEHLGGYPRILFDGLIDLNGGESIETPGLVSSNNSACFLCNVGP
GNTADHVGGPDQCEIQDVCGSSRNPAEIYERAQNATTTNILPPHVDRSMG
KVDKDGNPIMANTWILWHELVVYCHSSDPETDDSSINSNCLSADYIKEVI
KGYILMDSNKNEYQITVSDGNVHAAADAFAMNDTTLDDLKMGVSPEWNQD
CQGWTKYDIRLLASDPEVEQHILDLMDGFVEDPSDLQATILENADPSADL
QPCGITIKELGEQRIPSLAKMPAFKPSTKFTLGPAMWISDGVSIEPVKFL
TPGETYTVYVQNFPKGTKIDLTLMEGVALTGPTVASIDSFDEDGISEVRW
TVPRDIMDGRKRYLKAAISNIPALFTFSQVFYVDSDNRM*

mRNA from alignment at chr1:1664444..1669463-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO01G05900.1 ID=NO01G05900.1|Name=NO01G05900.1|organism=Nannochloropsis oceanica|type=mRNA|length=5020bp|location=Sequence derived from alignment at chr1:1664444..1669463- (Nannochloropsis oceanica)
ATGGTCTCTTCTGCAGTAGAGGGACCAGCGAACGATGCGGCCACAGCGGG
CGGAAAGCAAGAAACATCATCTTCCCGTTTTATGAAGAGATCCGTAGTGC
TAGGGCTTGTGGCAGGTGTGCTGGTTCTGGGGGCTATCTTTGGCGGCATC
TTTGGGGCGCGGGCTGTCGAGAAGAAGAAGCGCGTACCCATTCCCGTGGA
GGCTGTGACATACGCAATGGTGACGGAAGGATTCGCGAAGGGGGCTGTAG
TGCCTGTTCCGAATACCCTCAATAGCGCAGCGGCTAAAGCAACGTCGAAA
GCAACGACGACAGCAACAACGACAGCTGACAAGGCCCCCGCAGGAACTGG
CCTCGGTGGTGAGCATTCCATCTTTAGCTACGAATATTGGTTCGGTGAAG
GTGGTATCGGAGCTGTCCCGATGTTCGACCCTACGCCTTTGATACTCCCA
CCCGATGCTGTCACGGTGCCCACATGGACAACGGCTTTTCCAAATGGTAA
CTTCGCCAATACCGAAGGTCGCGTGGTGTGCTACGCCAAGACTGGACAAG
ACGTGATCGACATGGTTAGCGGAGACGAGAGCGCTTGTGAAGTAATTATC
CTGACGAACGACCGCTTCACGCCTTATGCTATTTCCAAAACGATGAACGT
AACCAAATCCAAGCTCCTCGTTGGTCGACCCATTTATGCACCCATGCTGA
ACGCCACAAATCGTGTAGAACGCCTCTTTGACAGTAAGTTGATGTATCGG
ATTCTCCTCGGACAAGTACAGATGACACGTCTAATTTTTCCTTCCACTTG
ATTTCTATTTGTGCAACTAGTTCTTCCTGGTGGACGCCTGGAGACTCGTA
ACGTGAATATGGTGCGTGGCTTCGGTCGCAATTTAGGTCTGAATGGAAAC
GAAATCAACCTTGTGGTTGGTAGCATTGCCCGTGTGCAAGTGGGTGGGCA
ATTTACGGCAACCGCGTAAGTCTCATGTGTGTTTGGGCTTTGCCAGTGAG
AGTGAGGCGCGATGGATAATGGAAACCCTGTGGTAAATTACACATCCAAA
TATAGATAAGCGAATTACACATCCAAATTATCCAGTTATTGATCTATTTC
ACACTCCATGCACATCTCATACAGTTGTATGTTTCGGGAGCGAAATAACA
CGCTTCCTAGCTTCATCGATGAGATCCGACGAAAGATCCGAACACCGACA
GCCCGCAACCGTCAGTTTGGTCAACTGATTTTGGTTCTAGGTGGAACCAT
CACCCTCACAGCATGTAAGTCTGAATGAAGGATTTATTCTCACCTGATGA
AGCACAGGTACAATTTCATCACTGAAATCATCCATCTCACAGGCCGCTCA
ATTCGATTCCGTCCATTCGGAAACGGAATCCTGAATGCGATGGTCATAGG
ACGTGATATCAATGTAGTGGCTGGCATGTGTACACTTATTGGCCACAACA
CTGCATCAGCAAGCTTATGGAGTGTCAACTACTTCATAGTTGGTACTCTA
GGCTTAGCCATGGGTGGAACCCTGACATTCGTGGGCGGGAACAATATCGG
CGCCAATTTGCTACAACTTCAAGCAGGGGTGATGTCCAATTTCGGAACAC
GTAAGCTCACTAAATACCGATATGTCTTCTCATTCTTGAAGAGAAAATAA
AATAGTTATGAATTCATCATTTTCCCTTCTTGTTTGAATTCGAATTCACA
GTCGCTGGATCACTGGTTACCGTCGGGTATGGATATACATCAGTCAAGGG
AATGCTACTCAGATTTGTTGCGGGGCAATTCGGGACTGGTAAGATTAAAA
CTAAAATCACAATTACTTTTGCAGCATGCGTGTATTTTATGTGTATGAAT
ACGAAACATACACACGCCAATTTTTACCCAAATCTTATTTCACCCCTCCT
CACATACACACATAATCACATTCTCATAGTGGCGGGTGTCTCCATCATGA
TCGGGTTTATCAGAGGCAGTGCCGATGGCTGTAAATGCCAAGGTGGTGCC
GGAGCAACTCATGCTACATTTACGGGGGTCAATAATAGGCACGCTGGAGC
TGAGACAGGCTATTCTATCAATGGGGCTTTCTTTGGGGCCGGTGGAACTA
ATTATGTAGCATCCGGCACGAACTTCGTCCAAGCTGTCCCCAGGATTGGA
ACATATCTCACGGCTTCTTCAAATGGTGTTGGGCTGGCCAGTTTTATAGG
TGCAGGAACTTCTACCAACTCTTACACCGCTCAATTAAGTGCACAGATGA
TGCGGTTCAATGCTGGCGTTGCAACTGATCTCTTTCAAGGCGCTGGATGG
TAAGCAACTATCACAATTTCTTTGCTTATCATATCCTTTCCTTTGGGCTT
GTTTTAATTCCCATGACACTTCATTGACCATTAAACTCATGTCATCTCTA
TAAAATGAACCCACCAACAGGCACACTAATATCAACGCCACCCGGTTCAG
CATACAGCTCGTCAACGCTTTTGTTGGAGCCGGCAACCAGCTCTTTGTAG
GCTTTGGAGGAGCAGCTTTCATCCGTACTTATTCTCTATCAGTGCGAGCT
CTACAATGGAATCCTAGCACACCCTATACTTATACAGTGGCTGGCGTGGG
TACTAGATCCTCCGGAACTCGAAGCCAGAACCTTATTTTATTTAAGGGCG
GTACCACTCGTTATATCTTCAACAAAACAAGTCGTACAGTCACAAAGATC
AGCTCACCTCAAGTACAAAAGACACCATCCCCGACTTCTATGAGGCGGAG
GGGACTGGTTCGGAAGCGTGCTGTCGAAGCTGAGGATATTGCCCATGTAC
CCACCACCATGGGTAAGTACCCCCTCCCATTGTAGAAATCCTGTCATCTT
TTGATAAGTAATCACGGCAGCTATGTCCAATGTAACCGATACATTCATCA
CGTACATCTAGGCTCCTGGCTTACAAGTATCGTTGATGCCGCGGGTGGCT
TTGATCCTAGCATTGAGAACAAGCTGGTTGTACTTCAAAGCACCATCATC
AACAGGCAATGGAAAACCCCTCCTCATCCTAGCAAATTCAGGGGTCGAAA
GATGATGGAGCATTTAGGTGGATATCCCAGAATCCTGTTTGACGGATTGA
TTGACTTGAACGGCGGTGAATCTATTGAGACTCCTGGTTTGGTCTCTTCC
AACAACTCTGCCTGCTTCCTTTGCAATGTCGGTCCTGGTAATACGGCTGA
TCACGTGGGTGGCCCCGACCAATGCGAGATTCAGGATGTCTGCGGATCTT
CTCGCAATCCTGCCGAAATCTATGAGAGAGCTCAAAATGCGACGACGACA
AACATTCTTCCTCCTCATGTGGATAGAAGTATGGGGAAGGTAGACAAGGA
TGGGAACCCTATCATGGCAAATACATGGATTTTGTGGCACGAGTTAGTCG
TCTATTGCCATTCCTCTGACCCTGAAACGGACGACAGCAGCATCAACAGC
AATTGTCTGAGCGCAGACTACATCAAGGAAGTGATCAAGGGTTATATCCT
CATGGACAGTAACAAGAATGAGTATCAGATTACGGTGAGCGACGGCAACG
TGCATGCTGCAGCTGATGCGTTCGCGATGAATGATACGACGCTGGATGAC
CTCAAGATGGGCGTTTCTCCGGAGTGGAACCAGGACTGCCAAGGCTGGAC
TAAGTACGACATTCGCCTCTTGGCAAGCGATCCAGAGGTAGAACAGCATA
TCTTGGATCTCATGGACGGCTTCGTGGAGGATCCTTCTGATCTGCAAGCT
ACCATCCTTGAAAACGCCGACCCTTCTGCGGATCTGCAACCCTGTGGCAT
CACTATTAAGGAATTGGGCGAACAGAGGATTCCTTCGCTGGCGAAAATGC
CGGCTTTCAAGCCGTCAACGAAGTTTACACTCGGGCCTGCAATGTGGATC
TCAGATGGGGTATCGATTGAGCCTGTGAAATTCCTTACTCCCGGTGAAAC
ATACACGGTGTATGTGCAGAATTTCCCCAAAGGCACCAAGATCGACCTGA
CACTTATGGAAGGTGTGGCGCTGACCGGCCCTACTGTGGCAAGCATTGAC
TCGTTTGACGAAGACGGCATTTCAGAGGTCCGCTGGACAGTGCCGAGGGA
TATCATGGACGGTAAGGAAAATATTTACTTGCATATATGATTTTGGGGGG
TCTTAGGGTAGGAACAAATGGGGAGGCGCTTATGGTAAGGGATATGTGAA
GAAGGGAGGAAGAGGATGTGTCCATTGTGGAACGTTTATTTTATCTGCTC
CATCCAGGAAAATGGTCACTAAATCACATACATCCCCCGGCTCAAATCAT
CAATACATATACATCTACAGGACGCAAACGGTACTTGAAAGCGGCAATCA
GCAATATTCCGGCCTTATTCACTTTCTCCCAAGTGTTTTACGTCGATAGC
GATAATCGCATGTAGGAGAACTGATAAGACAGACTGGTGCACCTGAAGCA
TTGGACTTGGTGATCCGACGTTTTATAGGTAGAAAGGCAGGTTATGTGAG
CCTTGAGCAGTACACTTTCGCGAATACTTATATATCTGTAGGCATATATA
TACATATATGTTACATTAAGTGATGGAAATCATTAACTTATCTCCATTCT
GATCGAAGAACGGGGATAGCCTTTGTTGGAATTTACTCCGACATTAATTT
TGTCGGTGGAATCGTTAGGGCTACGAGGTCGCATGTATGCCGTCGCACCA
CCAATGTGGCACAACCATCGGGGATAAAACATATAATAACCCACAGGGTG
CCTATTTGTATTCCACATTTAAGACTATCGAGCATACAGCCGCATCTTGA
AAGGAAGTAGGGATTGACCTACACAATGGAGCTTGACGTGCGTAGGTCCA
GGGCACAATCGGTCAAACAATACATTTTTTTATGTAGACGCACAGAGTCG
CTGGCTCTGTCGAATTCATAGAAAAGAATCAACTCAACTTAACTCAAAGC
AACACTTACTGAAGTCCGCTACATTCGATCACTCCCCACCATATGTATAT
ACCGCACGGACTATACATGA

Coding sequence (CDS) from alignment at chr1:1664444..1669463-

>NO01G05900.1 ID=NO01G05900.1|Name=NO01G05900.1|organism=Nannochloropsis oceanica|type=CDS|length=3420bp|location=Sequence derived from alignment at chr1:1664444..1669463- (Nannochloropsis oceanica)
ATGGTCTCTTCTGCAGTAGAGGGACCAGCGAACGATGCGGCCACAGCGGG
CGGAAAGCAAGAAACATCATCTTCCCGTTTTATGAAGAGATCCGTAGTGC
TAGGGCTTGTGGCAGGTGTGCTGGTTCTGGGGGCTATCTTTGGCGGCATC
TTTGGGGCGCGGGCTGTCGAGAAGAAGAAGCGCGTACCCATTCCCGTGGA
GGCTGTGACATACGCAATGGTGACGGAAGGATTCGCGAAGGGGGCTGTAG
TGCCTGTTCCGAATACCCTCAATAGCGCAGCGGCTAAAGCAACGTCGAAA
GCAACGACGACAGCAACAACGACAGCTGACAAGGCCCCCGCAGGAACTGG
CCTCGGTGGTGAGCATTCCATCTTTAGCTACGAATATTGGTTCGGTGAAG
GTGGTATCGGAGCTGTCCCGATGTTCGACCCTACGCCTTTGATACTCCCA
CCCGATGCTGTCACGGTGCCCACATGGACAACGGCTTTTCCAAATGGTAA
CTTCGCCAATACCGAAGGTCGCGTGGTGTGCTACGCCAAGACTGGACAAG
ACGTGATCGACATGGTTAGCGGAGACGAGAGCGCTTGTGAAGTAATTATC
CTGACGAACGACCGCTTCACGCCTTATGCTATTTCCAAAACGATGAACGT
AACCAAATCCAAGCTCCTCGTTGGTCGACCCATTTATGCACCCATGCTGA
ACGCCACAAATCGTGTAGAACGCCTCTTTGACATTCTTCCTGGTGGACGC
CTGGAGACTCGTAACGTGAATATGGTGCGTGGCTTCGGTCGCAATTTAGG
TCTGAATGGAAACGAAATCAACCTTGTGGTTGGTAGCATTGCCCGTGTGC
AAGTGGGTGGGCAATTTACGGCAACCGCTTGTATGTTTCGGGAGCGAAAT
AACACGCTTCCTAGCTTCATCGATGAGATCCGACGAAAGATCCGAACACC
GACAGCCCGCAACCGTCAGTTTGGTCAACTGATTTTGGTTCTAGGTGGAA
CCATCACCCTCACAGCATGCCGCTCAATTCGATTCCGTCCATTCGGAAAC
GGAATCCTGAATGCGATGGTCATAGGACGTGATATCAATGTAGTGGCTGG
CATGTGTACACTTATTGGCCACAACACTGCATCAGCAAGCTTATGGAGTG
TCAACTACTTCATAGTTGGTACTCTAGGCTTAGCCATGGGTGGAACCCTG
ACATTCGTGGGCGGGAACAATATCGGCGCCAATTTGCTACAACTTCAAGC
AGGGGTGATGTCCAATTTCGGAACACTCGCTGGATCACTGGTTACCGTCG
GGTATGGATATACATCAGTCAAGGGAATGCTACTCAGATTTGTTGCGGGG
CAATTCGGGACTGTGGCGGGTGTCTCCATCATGATCGGGTTTATCAGAGG
CAGTGCCGATGGCTGTAAATGCCAAGGTGGTGCCGGAGCAACTCATGCTA
CATTTACGGGGGTCAATAATAGGCACGCTGGAGCTGAGACAGGCTATTCT
ATCAATGGGGCTTTCTTTGGGGCCGGTGGAACTAATTATGTAGCATCCGG
CACGAACTTCGTCCAAGCTGTCCCCAGGATTGGAACATATCTCACGGCTT
CTTCAAATGGTGTTGGGCTGGCCAGTTTTATAGGTGCAGGAACTTCTACC
AACTCTTACACCGCTCAATTAAGTGCACAGATGATGCGGTTCAATGCTGG
CGTTGCAACTGATCTCTTTCAAGGCGCTGGATGGCACACTAATATCAACG
CCACCCGGTTCAGCATACAGCTCGTCAACGCTTTTGTTGGAGCCGGCAAC
CAGCTCTTTGTAGGCTTTGGAGGAGCAGCTTTCATCCGTACTTATTCTCT
ATCAGTGCGAGCTCTACAATGGAATCCTAGCACACCCTATACTTATACAG
TGGCTGGCGTGGGTACTAGATCCTCCGGAACTCGAAGCCAGAACCTTATT
TTATTTAAGGGCGGTACCACTCGTTATATCTTCAACAAAACAAGTCGTAC
AGTCACAAAGATCAGCTCACCTCAAGTACAAAAGACACCATCCCCGACTT
CTATGAGGCGGAGGGGACTGGTTCGGAAGCGTGCTGTCGAAGCTGAGGAT
ATTGCCCATGTACCCACCACCATGGGCTCCTGGCTTACAAGTATCGTTGA
TGCCGCGGGTGGCTTTGATCCTAGCATTGAGAACAAGCTGGTTGTACTTC
AAAGCACCATCATCAACAGGCAATGGAAAACCCCTCCTCATCCTAGCAAA
TTCAGGGGTCGAAAGATGATGGAGCATTTAGGTGGATATCCCAGAATCCT
GTTTGACGGATTGATTGACTTGAACGGCGGTGAATCTATTGAGACTCCTG
GTTTGGTCTCTTCCAACAACTCTGCCTGCTTCCTTTGCAATGTCGGTCCT
GGTAATACGGCTGATCACGTGGGTGGCCCCGACCAATGCGAGATTCAGGA
TGTCTGCGGATCTTCTCGCAATCCTGCCGAAATCTATGAGAGAGCTCAAA
ATGCGACGACGACAAACATTCTTCCTCCTCATGTGGATAGAAGTATGGGG
AAGGTAGACAAGGATGGGAACCCTATCATGGCAAATACATGGATTTTGTG
GCACGAGTTAGTCGTCTATTGCCATTCCTCTGACCCTGAAACGGACGACA
GCAGCATCAACAGCAATTGTCTGAGCGCAGACTACATCAAGGAAGTGATC
AAGGGTTATATCCTCATGGACAGTAACAAGAATGAGTATCAGATTACGGT
GAGCGACGGCAACGTGCATGCTGCAGCTGATGCGTTCGCGATGAATGATA
CGACGCTGGATGACCTCAAGATGGGCGTTTCTCCGGAGTGGAACCAGGAC
TGCCAAGGCTGGACTAAGTACGACATTCGCCTCTTGGCAAGCGATCCAGA
GGTAGAACAGCATATCTTGGATCTCATGGACGGCTTCGTGGAGGATCCTT
CTGATCTGCAAGCTACCATCCTTGAAAACGCCGACCCTTCTGCGGATCTG
CAACCCTGTGGCATCACTATTAAGGAATTGGGCGAACAGAGGATTCCTTC
GCTGGCGAAAATGCCGGCTTTCAAGCCGTCAACGAAGTTTACACTCGGGC
CTGCAATGTGGATCTCAGATGGGGTATCGATTGAGCCTGTGAAATTCCTT
ACTCCCGGTGAAACATACACGGTGTATGTGCAGAATTTCCCCAAAGGCAC
CAAGATCGACCTGACACTTATGGAAGGTGTGGCGCTGACCGGCCCTACTG
TGGCAAGCATTGACTCGTTTGACGAAGACGGCATTTCAGAGGTCCGCTGG
ACAGTGCCGAGGGATATCATGGACGGACGCAAACGGTACTTGAAAGCGGC
AATCAGCAATATTCCGGCCTTATTCACTTTCTCCCAAGTGTTTTACGTCG
ATAGCGATAATCGCATGTAG

Synonyms

Publications