NO01G05750.1, NO01G05750.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05750.1
Unique NameNO01G05750.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length567
Alignment locationchr1:1608264..1609581 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1608264..1609581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G05750.1 vs.
Match: EWM22794.1 (adenylyltransferase and sulfurtransferase mocs3, partial [Nannochloropsis gaditana])

HSP 1 Score: 139.0 bits (349), Expect = 1.500e-29
Identity = 75/161 (46.58%), Postives = 97/161 (60.25%), Query Frame = 0 
Query:   40 SCPPSLPPSSLLPPEHEVTCQTLASLRQAGVPLFILDVREPHQFAICSLPGAVNIPFSSFPSSLPQEGLWERGGEGSLSATKEGGEQREGGRDVG------------MLGKDLAVYVMCRRGILSREATRVLVERGWGKVWNVRGGLVKWKEEVDRDFPIY 189
            S PPSLPPS L  P   ++ Q  AS   A  P +++DVR+P QFAICSLP A+NIP +S  SSLP             S         EGG+D G            +  +D  VYV+CRRG++S++ATR+L+E GW +VWNVRGGLV+W+EEVD  FP+Y
Sbjct:    1 SLPPSLPPSLL--PSLRLSRQAYASRLHAQTPHYLIDVRDPTQFAICSLPNAINIPLASLASSLPP------------SLPPSSSPSPEGGKDDGATTTSPFLSLPSLPPRDAPVYVICRRGVMSQKATRMLLEGGWQRVWNVRGGLVQWREEVDGQFPMY 147
The following BLAST results are available for this feature:
BLAST of NO01G05750.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22794.11.500e-2946.58adenylyltransferase and sulfurtransferase mocs3, p... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05750NO01G05750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05750.1NO01G05750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05750.1.cds1NO01G05750.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05750.1.cds2NO01G05750.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05750.1.cds3NO01G05750.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05750.1.cds4NO01G05750.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05750.1.cds5NO01G05750.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05750.1 ID=NO01G05750.1|Name=NO01G05750.1|organism=Nannochloropsis oceanica|type=mRNA|length=567bp
ATGCTACCGGTGTCTATATCCCAAGCCCTTGGCAGCGGCCTCTGGAAGCT
GCAGCGAAAATGGAGTCTTGGGCGTGGTGCCCGGCATCATTGGCTGCCTG
CAGGTCATGGAGGCCCTTCCTGCCCTCCCTCCCTCCCTCCCTCCTCCCTG
CTTCCCCCCGAACACGAGGTCACTTGTCAGACTTTGGCCTCCCTCCGCCA
AGCCGGCGTTCCCCTCTTTATCCTGGACGTGCGCGAGCCTCATCAATTCG
CCATCTGCTCCTTGCCCGGTGCCGTCAACATCCCGTTTTCCTCCTTCCCT
TCCTCCCTCCCTCAGGAGGGCCTATGGGAGAGGGGGGGCGAGGGAAGTCT
CTCCGCAACCAAAGAGGGCGGGGAACAGAGGGAGGGAGGGAGGGATGTTG
GAATGCTAGGTAAGGATCTGGCGGTGTATGTCATGTGCCGACGAGGCATC
TTGTCGAGGGAGGCGACGCGCGTGCTTGTGGAAAGGGGGTGGGGTAAGGT
TTGGAATGTGAGGGGAGGGCTGGTCAAGTGGAAAGAGGAGGTGGACCGGG
ATTTTCCCATCTACTGA
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protein sequence of NO01G05750.1

>NO01G05750.1-protein ID=NO01G05750.1-protein|Name=NO01G05750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=189bp
MLPVSISQALGSGLWKLQRKWSLGRGARHHWLPAGHGGPSCPPSLPPSSL
LPPEHEVTCQTLASLRQAGVPLFILDVREPHQFAICSLPGAVNIPFSSFP
SSLPQEGLWERGGEGSLSATKEGGEQREGGRDVGMLGKDLAVYVMCRRGI
LSREATRVLVERGWGKVWNVRGGLVKWKEEVDRDFPIY*
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mRNA from alignment at chr1:1608264..1609581+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05750.1 ID=NO01G05750.1|Name=NO01G05750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1318bp|location=Sequence derived from alignment at chr1:1608264..1609581+ (Nannochloropsis oceanica)
ATGCTACCGGTGTCTATATCCCAAGCCCTTGGCAGGTACGTCAGTTTGTC
AACAGGCGGCGACCAGCTTCAGATAAAGGTCGATGTATGGAGTCCATTAT
TTAGGTGCCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTGTATTCCTCT
CTTTATTCCTCTCTTTATTCCTCTCTTTATTCCTCTCTGCCTTCGCCTCT
CTCCCTCCCTCCATTTCAACCCACATTCCTCCTCCAGCGGCCTCTGGAAG
CTGCAGCGAAAATGGAGTCTTGGGCGTGGTGCCCGGCATCATTGGCTGCC
TGCAGGTACCTCCCTTCTTCCCTCCCTCCTTCCCTCTCTCCTTCCCCTAC
TCCTTCCTTTTCCTTCTCTCTCTCTCTCTCTTTCTATTCTCTTTCCTTTC
CCATTTCTTAAAACCTCTGGCTCCTTTTTTACAAGTCCACCCTCTCCCTC
CCTTCCTCCCTCCCTCCCTCCCTCCCTCAGGTCATGGAGGTACTGAAACT
CCTGGCCGACACTCCCTCCCTCCCTCCCCTCTCCACCCGTCTCCTCCTCT
ACGATGCTACCTCCCCCACCTCCCCCTTCCTCCCCCTCTCCCTTCCCCCC
TCCTCCCTCCCTTCCTGCCCCCTCTGCTCGGGCCAGCTCCTCTCCCTTTC
GGCATGTGCGGCCTGGGCGGACGCCCACGGCCTCCGAGGTCCAGGCCCTT
CCTGCCCTCCCTCCCTCCCTCCCTCCTCCCTGCTTCCCCCCGAACACGAG
GTCACTTGTCAGGTGAGGAGGAATGAGGGGGGGAAGGAAAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGAAGGGAGCAACACAGTGTCCGTACCT
CAAATTCCAATCCACACACTCTTCCATCACCCCGGCCTCCCTCCCTTCCT
CCCTTCCTCCTTCCTCTCCCCTTTTCCTTAGACTTTGGCCTCCCTCCGCC
AAGCCGGCGTTCCCCTCTTTATCCTGGACGTGCGCGAGCCTCATCAATTC
GCCATCTGCTCCTTGCCCGGTGCCGTCAACATCCCGTTTTCCTCCTTCCC
TTCCTCCCTCCCTCAGGAGGGCCTATGGGAGAGGGGGGGCGAGGGAAGTC
TCTCCGCAACCAAAGAGGGCGGGGAACAGAGGGAGGGAGGGAGGGATGTT
GGAATGCTAGGTAAGGATCTGGCGGTGTATGTCATGTGCCGACGAGGCAT
CTTGTCGAGGGAGGCGACGCGCGTGCTTGTGGAAAGGGGGTGGGGTAAGG
TTTGGAATGTGAGGGGAGGGCTGGTCAAGTGGAAAGAGGAGGTGGACCGG
GATTTTCCCATCTACTGA
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Coding sequence (CDS) from alignment at chr1:1608264..1609581+

>NO01G05750.1 ID=NO01G05750.1|Name=NO01G05750.1|organism=Nannochloropsis oceanica|type=CDS|length=567bp|location=Sequence derived from alignment at chr1:1608264..1609581+ (Nannochloropsis oceanica)
ATGCTACCGGTGTCTATATCCCAAGCCCTTGGCAGCGGCCTCTGGAAGCT
GCAGCGAAAATGGAGTCTTGGGCGTGGTGCCCGGCATCATTGGCTGCCTG
CAGGTCATGGAGGCCCTTCCTGCCCTCCCTCCCTCCCTCCCTCCTCCCTG
CTTCCCCCCGAACACGAGGTCACTTGTCAGACTTTGGCCTCCCTCCGCCA
AGCCGGCGTTCCCCTCTTTATCCTGGACGTGCGCGAGCCTCATCAATTCG
CCATCTGCTCCTTGCCCGGTGCCGTCAACATCCCGTTTTCCTCCTTCCCT
TCCTCCCTCCCTCAGGAGGGCCTATGGGAGAGGGGGGGCGAGGGAAGTCT
CTCCGCAACCAAAGAGGGCGGGGAACAGAGGGAGGGAGGGAGGGATGTTG
GAATGCTAGGTAAGGATCTGGCGGTGTATGTCATGTGCCGACGAGGCATC
TTGTCGAGGGAGGCGACGCGCGTGCTTGTGGAAAGGGGGTGGGGTAAGGT
TTGGAATGTGAGGGGAGGGCTGGTCAAGTGGAAAGAGGAGGTGGACCGGG
ATTTTCCCATCTACTGA
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Synonyms
Publications