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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:1606907..1608253 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G05740.1 vs.
Match: XP_018824599.1 (PREDICTED: adenylyltransferase and sulfurtransferase MOCS3 [Juglans regia]) HSP 1 Score: 177.9 bits (450), Expect = 5.000e-41 Identity = 101/191 (52.88%), Postives = 125/191 (65.45%), Query Frame = 0
Query: 97 PPVHQLTSEHITRYSRQLLLPSFGVQGQRNLLSSSVLVVGAGGLGSAVLLYLAGAGVGRLGIVDFDGVERSNLHRQVIHTEAREGGRKAWSAAESVRALNSQVEVCVYEEEVGWDNVEGLLQGWEVVVDASDNPRTRYLLNDACWLGQGEGEGGREEGKEGRRRRGRRGRPSALVSGAALGLEGQVTVFDY 288
P H LT E I RYSR LLLPSFGVQ Q NLL SSVLVVGAGGLGS LLYLA GVGRLGIVD D VE +N+HRQ+IHTEA G K SAA + R++NS V++ + E + N G+ ++V+VDA+DN +RY+++D C + G+P LVSGAALGLEGQ+TV++Y
Sbjct: 62 PHAHYLTPEMIHRYSRHLLLPSFGVQAQSNLLKSSVLVVGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQIIHTEAFIGQPKVKSAAAACRSVNSTVQIVEHHEALRTSNALGIFSKYDVIVDATDNAPSRYMISDCCVV---------------------LGKP--LVSGAALGLEGQLTVYNY 229
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G05740.1 ID=NO01G05740.1|Name=NO01G05740.1|organism=Nannochloropsis oceanica|type=mRNA|length=984bp ATGCCTGAGTTAGTCACTGTGAGAGAGACCACTGGCTGTGGACAAAGAGG GAGAAATATGACAGCTACTGGAGGCCAAGCTGCCCGAACGGCAGAGCTCG AGCAGAATCCCCCCCCAGCACTGTCCTATGAAGCGCTCCTCGAGGAAAAT TTACGTCTCAAGGAACAGCTCCAGCAGCTGCAGCAACAACATCAACGACA ACAATCGCAGCAGCAGCAGCAGCAGCAGCGAAAAAAAACTCCATCTACTC CCCTTTCCTGTTCCTCCTCCGTCCCTCTCCCCCCTCTCCCGCCTGTCCAC CAGCTCACTTCTGAACACATCACCCGCTACTCTCGGCAGCTGCTCCTCCC ATCCTTTGGCGTGCAAGGGCAGCGAAACCTTTTGTCGTCCTCTGTGCTTG TCGTCGGTGCCGGCGGGCTGGGCTCGGCCGTCCTCCTTTACCTAGCTGGG GCCGGCGTAGGCCGTTTGGGAATTGTCGACTTCGATGGGGTCGAACGCAG CAATCTCCACCGACAGGTCATCCACACCGAGGCAAGGGAGGGCGGGAGGA AAGCCTGGTCTGCCGCAGAAAGTGTCCGGGCCCTGAATAGCCAGGTGGAG GTGTGTGTGTATGAGGAGGAGGTGGGATGGGACAACGTGGAGGGGCTGCT GCAAGGGTGGGAGGTTGTGGTGGACGCTAGCGATAATCCCCGTACGAGAT ATTTACTCAATGATGCCTGTTGGCTGGGCCAGGGGGAGGGTGAGGGAGGG AGGGAGGAAGGGAAGGAGGGAAGGAGGAGGAGGGGGAGGAGGGGGAGGCC GTCGGCGCTGGTGTCCGGGGCAGCTCTGGGCTTGGAGGGACAGGTGACAG TCTTTGACTACGAGCCGTTGGGGCAAGAAGCAGGACGTGGGAAAGGTGGA AGAGGAGGAAGGGGGGGGGGGGAGGAGAAGGGGAAGGAGGAGGAGGACGC AGGGGAGGAGGAGGACAGGGAGAACAGAAGTTGA back to topprotein sequence of NO01G05740.1 >NO01G05740.1-protein ID=NO01G05740.1-protein|Name=NO01G05740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=328bp MPELVTVRETTGCGQRGRNMTATGGQAARTAELEQNPPPALSYEALLEEN LRLKEQLQQLQQQHQRQQSQQQQQQQRKKTPSTPLSCSSSVPLPPLPPVH QLTSEHITRYSRQLLLPSFGVQGQRNLLSSSVLVVGAGGLGSAVLLYLAG AGVGRLGIVDFDGVERSNLHRQVIHTEAREGGRKAWSAAESVRALNSQVE VCVYEEEVGWDNVEGLLQGWEVVVDASDNPRTRYLLNDACWLGQGEGEGG REEGKEGRRRRGRRGRPSALVSGAALGLEGQVTVFDYEPLGQEAGRGKGG RGGRGGGEEKGKEEEDAGEEEDRENRS* back to topmRNA from alignment at chr1:1606907..1608253+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G05740.1 ID=NO01G05740.1|Name=NO01G05740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1347bp|location=Sequence derived from alignment at chr1:1606907..1608253+ (Nannochloropsis oceanica) ATGCCTGAGTTAGTCACTGTGAGAGGTAGGGTGTGAGGTACGAAGGCAGG
CGAAGAGACACCACAGATCACAGACACGTTCGTCATCTCCATCAAGCCGT
GGGCCAGGAGGTCGACATCTCCTTGTTGCACTATATGACGCTTCCCACAC
CCACAACCCACAGAGACCACTGGCTGTGGACAAAGAGGGAGAAATATGAC
AGCTACTGGAGGCCAAGCTGCCCGAACGGCAGAGCTCGAGGTGAGTTTAA
GGATGTTGGCCTCGTACCCTCCCTCCCTCCCAAACGGACTTGCCTCCCCT
CCCTCACTCTGCTCCCTCTCCGCCTTGACAGCAGAATCCCCCCCCAGCAC
TGTCCTATGAAGCGCTCCTCGAGGAAAATTTACGTCTCAAGGAACAGCTC
CAGCAGCTGCAGCAACAACATCAACGACAACAATCGCAGCAGCAGCAGCA
GCAGCAGCGAAAAAAAACTCCATCTACTCCCCTTTCCTGTTCCTCCTCCG
TCCCTCTCCCCCCTCTCCCGCCTGTCCACCAGCTCACTTCTGAACACATC
ACCCGCTACTCTCGGCAGCTGCTCCTCCCATCCTTTGGCGTGCAAGGGCA
GCGAAACCTTTTGTCGTCCTCTGTGCTTGTCGTCGGTGCCGGTATGTGTC
TCCCTTTCCTCCTCCCTCCCCTTTCAGCTCTGCCCTCCCTCTCTTCATGC
ATTCTCTTACCGCGATGATATCAACTATCTATTCATACTGTTTCTCTTGC
CCTCCTTCTTCCCTCTGTCGACAAGGCGGGCTGGGCTCGGCCGTCCTCCT
TTACCTAGCTGGGGCCGGCGTAGGCCGTTTGGGAATTGTCGACTTCGATG
GGGTCGAACGCAGCAATCTCCACCGACAGGTCATCCACACCGAGGCAAGG
GAGGGCGGGAGGAAAGCCTGGTCTGCCGCAGAAAGTGTCCGGGCCCTGAA
TAGCCAGGTGGAGGTGTGTGTGTATGAGGAGGAGGTGGGATGGGACAACG
TGGAGGGGCTGCTGCAAGGGTGGGAGGTTGTGGTGGACGCTAGCGATAAT
CCCCGTACGAGATATTTACTCAATGATGCCTGTTGGCTGGGCCAGGGGGA
GGGTGAGGGAGGGAGGGAGGAAGGGAAGGAGGGAAGGAGGAGGAGGGGGA
GGAGGGGGAGGCCGTCGGCGCTGGTGTCCGGGGCAGCTCTGGGCTTGGAG
GGACAGGTGACAGTCTTTGACTACGAGCCGTTGGGGCAAGAAGCAGGACG
TGGGAAAGGTGGAAGAGGAGGAAGGGGGGGGGGGGAGGAGAAGGGGAAGG
AGGAGGAGGACGCAGGGGAGGAGGAGGACAGGGAGAACAGAAGTTGA back to topCoding sequence (CDS) from alignment at chr1:1606907..1608253+ >NO01G05740.1 ID=NO01G05740.1|Name=NO01G05740.1|organism=Nannochloropsis oceanica|type=CDS|length=984bp|location=Sequence derived from alignment at chr1:1606907..1608253+ (Nannochloropsis oceanica) ATGCCTGAGTTAGTCACTGTGAGAGAGACCACTGGCTGTGGACAAAGAGG GAGAAATATGACAGCTACTGGAGGCCAAGCTGCCCGAACGGCAGAGCTCG AGCAGAATCCCCCCCCAGCACTGTCCTATGAAGCGCTCCTCGAGGAAAAT TTACGTCTCAAGGAACAGCTCCAGCAGCTGCAGCAACAACATCAACGACA ACAATCGCAGCAGCAGCAGCAGCAGCAGCGAAAAAAAACTCCATCTACTC CCCTTTCCTGTTCCTCCTCCGTCCCTCTCCCCCCTCTCCCGCCTGTCCAC CAGCTCACTTCTGAACACATCACCCGCTACTCTCGGCAGCTGCTCCTCCC ATCCTTTGGCGTGCAAGGGCAGCGAAACCTTTTGTCGTCCTCTGTGCTTG TCGTCGGTGCCGGCGGGCTGGGCTCGGCCGTCCTCCTTTACCTAGCTGGG GCCGGCGTAGGCCGTTTGGGAATTGTCGACTTCGATGGGGTCGAACGCAG CAATCTCCACCGACAGGTCATCCACACCGAGGCAAGGGAGGGCGGGAGGA AAGCCTGGTCTGCCGCAGAAAGTGTCCGGGCCCTGAATAGCCAGGTGGAG GTGTGTGTGTATGAGGAGGAGGTGGGATGGGACAACGTGGAGGGGCTGCT GCAAGGGTGGGAGGTTGTGGTGGACGCTAGCGATAATCCCCGTACGAGAT ATTTACTCAATGATGCCTGTTGGCTGGGCCAGGGGGAGGGTGAGGGAGGG AGGGAGGAAGGGAAGGAGGGAAGGAGGAGGAGGGGGAGGAGGGGGAGGCC GTCGGCGCTGGTGTCCGGGGCAGCTCTGGGCTTGGAGGGACAGGTGACAG TCTTTGACTACGAGCCGTTGGGGCAAGAAGCAGGACGTGGGAAAGGTGGA AGAGGAGGAAGGGGGGGGGGGGAGGAGAAGGGGAAGGAGGAGGAGGACGC AGGGGAGGAGGAGGACAGGGAGAACAGAAGTTGA back to top
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