NO01G05740.1, NO01G05740.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05740.1
Unique NameNO01G05740.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length984
Alignment locationchr1:1606907..1608253 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1606907..1608253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G05740.1 vs.
Match: XP_018824599.1 (PREDICTED: adenylyltransferase and sulfurtransferase MOCS3 [Juglans regia])

HSP 1 Score: 177.9 bits (450), Expect = 5.000e-41
Identity = 101/191 (52.88%), Postives = 125/191 (65.45%), Query Frame = 0
Query:   97 PPVHQLTSEHITRYSRQLLLPSFGVQGQRNLLSSSVLVVGAGGLGSAVLLYLAGAGVGRLGIVDFDGVERSNLHRQVIHTEAREGGRKAWSAAESVRALNSQVEVCVYEEEVGWDNVEGLLQGWEVVVDASDNPRTRYLLNDACWLGQGEGEGGREEGKEGRRRRGRRGRPSALVSGAALGLEGQVTVFDY 288
            P  H LT E I RYSR LLLPSFGVQ Q NLL SSVLVVGAGGLGS  LLYLA  GVGRLGIVD D VE +N+HRQ+IHTEA  G  K  SAA + R++NS V++  + E +   N  G+   ++V+VDA+DN  +RY+++D C +                      G+P  LVSGAALGLEGQ+TV++Y
Sbjct:   62 PHAHYLTPEMIHRYSRHLLLPSFGVQAQSNLLKSSVLVVGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQIIHTEAFIGQPKVKSAAAACRSVNSTVQIVEHHEALRTSNALGIFSKYDVIVDATDNAPSRYMISDCCVV---------------------LGKP--LVSGAALGLEGQLTVYNY 229          
The following BLAST results are available for this feature:
BLAST of NO01G05740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_018824599.15.000e-4152.88PREDICTED: adenylyltransferase and sulfurtransfera... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05740NO01G05740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05740.1NO01G05740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05740.1.cds1NO01G05740.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05740.1.cds2NO01G05740.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05740.1.cds3NO01G05740.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05740.1.cds4NO01G05740.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05740.1 ID=NO01G05740.1|Name=NO01G05740.1|organism=Nannochloropsis oceanica|type=mRNA|length=984bp
ATGCCTGAGTTAGTCACTGTGAGAGAGACCACTGGCTGTGGACAAAGAGG
GAGAAATATGACAGCTACTGGAGGCCAAGCTGCCCGAACGGCAGAGCTCG
AGCAGAATCCCCCCCCAGCACTGTCCTATGAAGCGCTCCTCGAGGAAAAT
TTACGTCTCAAGGAACAGCTCCAGCAGCTGCAGCAACAACATCAACGACA
ACAATCGCAGCAGCAGCAGCAGCAGCAGCGAAAAAAAACTCCATCTACTC
CCCTTTCCTGTTCCTCCTCCGTCCCTCTCCCCCCTCTCCCGCCTGTCCAC
CAGCTCACTTCTGAACACATCACCCGCTACTCTCGGCAGCTGCTCCTCCC
ATCCTTTGGCGTGCAAGGGCAGCGAAACCTTTTGTCGTCCTCTGTGCTTG
TCGTCGGTGCCGGCGGGCTGGGCTCGGCCGTCCTCCTTTACCTAGCTGGG
GCCGGCGTAGGCCGTTTGGGAATTGTCGACTTCGATGGGGTCGAACGCAG
CAATCTCCACCGACAGGTCATCCACACCGAGGCAAGGGAGGGCGGGAGGA
AAGCCTGGTCTGCCGCAGAAAGTGTCCGGGCCCTGAATAGCCAGGTGGAG
GTGTGTGTGTATGAGGAGGAGGTGGGATGGGACAACGTGGAGGGGCTGCT
GCAAGGGTGGGAGGTTGTGGTGGACGCTAGCGATAATCCCCGTACGAGAT
ATTTACTCAATGATGCCTGTTGGCTGGGCCAGGGGGAGGGTGAGGGAGGG
AGGGAGGAAGGGAAGGAGGGAAGGAGGAGGAGGGGGAGGAGGGGGAGGCC
GTCGGCGCTGGTGTCCGGGGCAGCTCTGGGCTTGGAGGGACAGGTGACAG
TCTTTGACTACGAGCCGTTGGGGCAAGAAGCAGGACGTGGGAAAGGTGGA
AGAGGAGGAAGGGGGGGGGGGGAGGAGAAGGGGAAGGAGGAGGAGGACGC
AGGGGAGGAGGAGGACAGGGAGAACAGAAGTTGA
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protein sequence of NO01G05740.1

>NO01G05740.1-protein ID=NO01G05740.1-protein|Name=NO01G05740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=328bp
MPELVTVRETTGCGQRGRNMTATGGQAARTAELEQNPPPALSYEALLEEN
LRLKEQLQQLQQQHQRQQSQQQQQQQRKKTPSTPLSCSSSVPLPPLPPVH
QLTSEHITRYSRQLLLPSFGVQGQRNLLSSSVLVVGAGGLGSAVLLYLAG
AGVGRLGIVDFDGVERSNLHRQVIHTEAREGGRKAWSAAESVRALNSQVE
VCVYEEEVGWDNVEGLLQGWEVVVDASDNPRTRYLLNDACWLGQGEGEGG
REEGKEGRRRRGRRGRPSALVSGAALGLEGQVTVFDYEPLGQEAGRGKGG
RGGRGGGEEKGKEEEDAGEEEDRENRS*
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mRNA from alignment at chr1:1606907..1608253+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05740.1 ID=NO01G05740.1|Name=NO01G05740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1347bp|location=Sequence derived from alignment at chr1:1606907..1608253+ (Nannochloropsis oceanica)
ATGCCTGAGTTAGTCACTGTGAGAGGTAGGGTGTGAGGTACGAAGGCAGG CGAAGAGACACCACAGATCACAGACACGTTCGTCATCTCCATCAAGCCGT GGGCCAGGAGGTCGACATCTCCTTGTTGCACTATATGACGCTTCCCACAC CCACAACCCACAGAGACCACTGGCTGTGGACAAAGAGGGAGAAATATGAC AGCTACTGGAGGCCAAGCTGCCCGAACGGCAGAGCTCGAGGTGAGTTTAA GGATGTTGGCCTCGTACCCTCCCTCCCTCCCAAACGGACTTGCCTCCCCT CCCTCACTCTGCTCCCTCTCCGCCTTGACAGCAGAATCCCCCCCCAGCAC TGTCCTATGAAGCGCTCCTCGAGGAAAATTTACGTCTCAAGGAACAGCTC CAGCAGCTGCAGCAACAACATCAACGACAACAATCGCAGCAGCAGCAGCA GCAGCAGCGAAAAAAAACTCCATCTACTCCCCTTTCCTGTTCCTCCTCCG TCCCTCTCCCCCCTCTCCCGCCTGTCCACCAGCTCACTTCTGAACACATC ACCCGCTACTCTCGGCAGCTGCTCCTCCCATCCTTTGGCGTGCAAGGGCA GCGAAACCTTTTGTCGTCCTCTGTGCTTGTCGTCGGTGCCGGTATGTGTC TCCCTTTCCTCCTCCCTCCCCTTTCAGCTCTGCCCTCCCTCTCTTCATGC ATTCTCTTACCGCGATGATATCAACTATCTATTCATACTGTTTCTCTTGC CCTCCTTCTTCCCTCTGTCGACAAGGCGGGCTGGGCTCGGCCGTCCTCCT TTACCTAGCTGGGGCCGGCGTAGGCCGTTTGGGAATTGTCGACTTCGATG GGGTCGAACGCAGCAATCTCCACCGACAGGTCATCCACACCGAGGCAAGG GAGGGCGGGAGGAAAGCCTGGTCTGCCGCAGAAAGTGTCCGGGCCCTGAA TAGCCAGGTGGAGGTGTGTGTGTATGAGGAGGAGGTGGGATGGGACAACG TGGAGGGGCTGCTGCAAGGGTGGGAGGTTGTGGTGGACGCTAGCGATAAT CCCCGTACGAGATATTTACTCAATGATGCCTGTTGGCTGGGCCAGGGGGA GGGTGAGGGAGGGAGGGAGGAAGGGAAGGAGGGAAGGAGGAGGAGGGGGA GGAGGGGGAGGCCGTCGGCGCTGGTGTCCGGGGCAGCTCTGGGCTTGGAG GGACAGGTGACAGTCTTTGACTACGAGCCGTTGGGGCAAGAAGCAGGACG TGGGAAAGGTGGAAGAGGAGGAAGGGGGGGGGGGGAGGAGAAGGGGAAGG AGGAGGAGGACGCAGGGGAGGAGGAGGACAGGGAGAACAGAAGTTGA
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Coding sequence (CDS) from alignment at chr1:1606907..1608253+

>NO01G05740.1 ID=NO01G05740.1|Name=NO01G05740.1|organism=Nannochloropsis oceanica|type=CDS|length=984bp|location=Sequence derived from alignment at chr1:1606907..1608253+ (Nannochloropsis oceanica)
ATGCCTGAGTTAGTCACTGTGAGAGAGACCACTGGCTGTGGACAAAGAGG
GAGAAATATGACAGCTACTGGAGGCCAAGCTGCCCGAACGGCAGAGCTCG
AGCAGAATCCCCCCCCAGCACTGTCCTATGAAGCGCTCCTCGAGGAAAAT
TTACGTCTCAAGGAACAGCTCCAGCAGCTGCAGCAACAACATCAACGACA
ACAATCGCAGCAGCAGCAGCAGCAGCAGCGAAAAAAAACTCCATCTACTC
CCCTTTCCTGTTCCTCCTCCGTCCCTCTCCCCCCTCTCCCGCCTGTCCAC
CAGCTCACTTCTGAACACATCACCCGCTACTCTCGGCAGCTGCTCCTCCC
ATCCTTTGGCGTGCAAGGGCAGCGAAACCTTTTGTCGTCCTCTGTGCTTG
TCGTCGGTGCCGGCGGGCTGGGCTCGGCCGTCCTCCTTTACCTAGCTGGG
GCCGGCGTAGGCCGTTTGGGAATTGTCGACTTCGATGGGGTCGAACGCAG
CAATCTCCACCGACAGGTCATCCACACCGAGGCAAGGGAGGGCGGGAGGA
AAGCCTGGTCTGCCGCAGAAAGTGTCCGGGCCCTGAATAGCCAGGTGGAG
GTGTGTGTGTATGAGGAGGAGGTGGGATGGGACAACGTGGAGGGGCTGCT
GCAAGGGTGGGAGGTTGTGGTGGACGCTAGCGATAATCCCCGTACGAGAT
ATTTACTCAATGATGCCTGTTGGCTGGGCCAGGGGGAGGGTGAGGGAGGG
AGGGAGGAAGGGAAGGAGGGAAGGAGGAGGAGGGGGAGGAGGGGGAGGCC
GTCGGCGCTGGTGTCCGGGGCAGCTCTGGGCTTGGAGGGACAGGTGACAG
TCTTTGACTACGAGCCGTTGGGGCAAGAAGCAGGACGTGGGAAAGGTGGA
AGAGGAGGAAGGGGGGGGGGGGAGGAGAAGGGGAAGGAGGAGGAGGACGC
AGGGGAGGAGGAGGACAGGGAGAACAGAAGTTGA
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Synonyms
Publications