NO01G05730.2, NO01G05730.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05730.2
Unique NameNO01G05730.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1930
Alignment locationchr1:1604268..1606797 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1604268..1606797 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G05730.2 vs.
Match: XP_009519063.1 (hypothetical protein PHYSODRAFT_485686 [Phytophthora sojae]; EGZ23775.1 hypothetical protein PHYSODRAFT_485686 [Phytophthora sojae])

HSP 1 Score: 132.1 bits (331), Expect = 5.000e-27
Identity = 72/115 (62.61%), Postives = 85/115 (73.91%), Query Frame = 0
Query:  364 ETDRAEAARFKAQVQGGGGRDDSSDEDDDMGPRPLEDDLEGGREGGRSRNFGGALMPGEGEAIAQYAEKNMRIPRRGEVGWQGEEIERLEELGYVMSGNRHKRMNAIRIRKENQV 479
            E ++ EA +FK  VQG    DDS   D+++GP+PL    E       S N+G AL+PGEG AIAQ+ +KNMRIPRRGEVGW GEEIE LE LGYVMSG+RHKRMNA+RIRKENQV
Sbjct:    6 EDEKREAVKFKEAVQGARHADDS---DEEIGPKPLPAAEE---TAASSLNYGKALLPGEGAAIAQFVQKNMRIPRRGEVGWNGEEIENLENLGYVMSGSRHKRMNAVRIRKENQV 114          
The following BLAST results are available for this feature:
BLAST of NO01G05730.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_009519063.15.000e-2762.61hypothetical protein PHYSODRAFT_485686 [Phytophtho... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05730NO01G05730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05730.2NO01G05730.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05730.2.cds1NO01G05730.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05730.2.cds2NO01G05730.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05730.2.cds3NO01G05730.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05730.2.cds4NO01G05730.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05730.2 ID=NO01G05730.2|Name=NO01G05730.2|organism=Nannochloropsis oceanica|type=mRNA|length=1930bp
ATGCCATCGAGCCGAGAAGCACCTCGTGACGGCCGCGATGAACGACGAAG
AGACAGGAGCGGCAGCGGGGGGAGGGAACGTCGGGGAGGGAGGGGAAGCA
GGAGTAATAGTCCACCGTATCGACGTCGCTTATCCCGCTCTCGCTCTCGA
TCTCCACCTACCCGTCGGCAGCTAGAGCGGATGCGGGAGGAGCGTGAGAA
GGAGAGGGAACGAGGAGGAGATAGAGGAGATAAAGGGGACAGGGAGAGAA
GGAGGGATGAGGGAAGAGATATGGAAAGAGAGAGGGACCGCCGTCCTTCC
CCTCCTTCCGATTCGTACGGGCGCTACGGTGAACGAGGTAGGGATGGCAG
TGGAGGAGGACGGGTTGAAGGAGAGGAGAGGAGAGGAAGAGGAGGAAGTC
GCTGGGAAAGAGGAGGAGGAGGAGGAGGAGGAGACGAGTCATGGGGTCGG
AATGGTGGTGGTGGAGGAGGAAGCGCAGCAAGGGGGAATGATACCTCTTT
GCCAGGTGAGACTTATGAGGAGATGCGGCTGCGGAAAAGGAGGGAATTGA
GTGAGACTTCTACGGCGGCTCAAGATATCTGGGCCCGGTCGCCTACGCCG
CCTGCAGTGAGGGGAAAGAAGATGGGTCAATGTCGAAGGGAAGGCGGTGG
AGGGAGGAAGAAGAAAGAGGACATTATGGCGGTGAAGAGCGGAAAGAGGA
AGAAGAGGAAGGAGGAGGTGAATTCCAAGCGCAAGGATAAAGGCCAGGGC
TCCAATAATAGGAGGAAGAAGAAAAAGGCCCGTAGACCCTCTCCCCCCTC
CTCATCCTCCTCCTCGTCCTCCTCTTCCTCGTCAGATAGCAGTAACAGCA
GTAGCAGTAGCAGCAGCAGCAGCAGCAGTAGCAGCAGCAGTAGTAGTAGT
ACTAGTAGTAGTAGTGAAAGTGAGGATGAGGAAGAGAGGCAACAGGCGGC
ACGCCGACGAGAGAAAAGGGAAAATTCTCAGACCAGCACAGCAGCTGCCA
CCGTGGCTGCAGCTGCTGGTGCCGAGGCAGAGGGAGAGGAGGGAAGGAGG
GGGAAGGAGCCGGAGGAGGGGGAGGGGGAGAGCATGGATGAGACGGACCG
TGCGGAGGCGGCTCGTTTCAAGGCTCAAGTGCAAGGTGGAGGAGGGCGCG
ACGACAGCAGCGACGAGGACGACGATATGGGCCCACGGCCGTTGGAAGAC
GACCTGGAGGGGGGAAGAGAGGGCGGGAGGTCTAGAAACTTCGGCGGTGC
GCTCATGCCAGGCGAGGGCGAAGCCATTGCCCAGTACGCGGAGAAGAACA
TGCGCATTCCCCGACGAGGCGAGGTCGGGTGGCAGGGGGAGGAGATCGAG
AGGCTCGAGGAACTGGGATATGTCATGAGCGGGAATCGGCACAAGCGGAT
GAATGCCATTCGAATCCGGAAGGAGAATCAGGTAGGGAGGGACATGCGTC
TGTCTGTCGGCGTTAACGCCTTGCTGATACTCCTTCCTTCGCTCACGTCC
TTTTCTCTCTGTATTCGATGGATTCCTGTGTGCTTGTTTGTCCTCTGTCC
TCGTCTCCCTTCGCTACCACGCTTTTTTCCCAGTGCTTGACCTTCCTTTT
CTTCCTTTCCCTCTCTTCTTCCCTCCCTCTCTCGGTTCCTTCTCACTCCT
AGGTCTACACCGCCCTGGAAAAAAAAGCCCTGGCGCTCATACAGCTGGAG
GAGAACAAACAAAAGGAAGCCACCCTCCTGGCCAATTTCAAGCAGGCGCT
GGAGCAGCGCAAGGCGAAGGGGGTGGAAGTGGCCGGGGAAGGTGGAGAAG
AAGGTGGAGGTGGGGGCAAGCTGGAGGCTTAGAGAAACGGCTGCTTTGTC
CACCGCGACGACAAGGGTAAGAACTAGTAGGCTGAAGATCGCAAAACCAT
TAAAAAGAAAGAAAGAGAAACATTGCGGTG
back to top

protein sequence of NO01G05730.2

>NO01G05730.2-protein ID=NO01G05730.2-protein|Name=NO01G05730.2|organism=Nannochloropsis oceanica|type=polypeptide|length=530bp
MPSSREAPRDGRDERRRDRSGSGGRERRGGRGSRSNSPPYRRRLSRSRSR
SPPTRRQLERMREEREKERERGGDRGDKGDRERRRDEGRDMERERDRRPS
PPSDSYGRYGERGRDGSGGGRVEGEERRGRGGSRWERGGGGGGGDESWGR
NGGGGGGSAARGNDTSLPGETYEEMRLRKRRELSETSTAAQDIWARSPTP
PAVRGKKMGQCRREGGGGRKKKEDIMAVKSGKRKKRKEEVNSKRKDKGQG
SNNRRKKKKARRPSPPSSSSSSSSSSSSDSSNSSSSSSSSSSSSSSSSSS
TSSSSESEDEEERQQAARRREKRENSQTSTAAATVAAAAGAEAEGEEGRR
GKEPEEGEGESMDETDRAEAARFKAQVQGGGGRDDSSDEDDDMGPRPLED
DLEGGREGGRSRNFGGALMPGEGEAIAQYAEKNMRIPRRGEVGWQGEEIE
RLEELGYVMSGNRHKRMNAIRIRKENQVGRDMRLSVGVNALLILLPSLTS
FSLCIRWIPVCLFVLCPRLPSLPRFFPSA*
back to top

mRNA from alignment at chr1:1604268..1606797-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05730.2 ID=NO01G05730.2|Name=NO01G05730.2|organism=Nannochloropsis oceanica|type=mRNA|length=2530bp|location=Sequence derived from alignment at chr1:1604268..1606797- (Nannochloropsis oceanica)
ATGCCATCGAGCCGAGAAGCACCTCGTGACGGCCGCGATGAACGACGAAG AGACAGGAGCGGCAGCGGGGGGAGGGAACGTCGGGGAGGGAGGGGAAGCA GGAGTAATAGTCCACCGTATCGACGTCGCTTATCCCGCTCTCGCTCTCGA TCTCCACCTACCCGTCGGCAGCTAGAGCGGATGCGGGAGGAGCGTGAGAA GGAGAGGGAACGAGGAGGAGATAGAGGAGATAAAGGGGACAGGGAGAGAA GGAGGGATGAGGGAAGAGATATGGAAAGAGAGAGGGACCGCCGTCCTTCC CCTCCTTCCGATTCGTACGGGCGCTACGGTGAACGAGGTAGGGATGGCAG TGGAGGAGGACGGGTTGAAGGAGAGGAGAGGAGAGGAAGAGGAGGAAGTC GCTGGGAAAGAGGAGGAGGAGGAGGAGGAGGAGACGAGTCATGGGGTCGG AATGGTGGTGGTGGAGGAGGAAGCGCAGCAAGGGGGAATGATACCTCTTT GCCAGGTGAGACTTATGAGGAGATGCGGCTGCGGAAAAGGAGGGAATTGA GTGAGACTTCTACGGCGGCTCAAGATATCTGGGCCCGGTCGCCTACGCCG CCTGCAGTGAGGGGAAAGAAGATGGGTCAATGTCGAAGGGAAGGCGGTGG AGGGAGGAAGAAGAAAGAGGACATTATGGCGGTGAAGAGCGGAAAGAGGA AGAAGAGGAAGGAGGAGGTGAATTCCAAGCGCAAGGATAAAGGCCAGGGC TCCAATAATAGGAGGAAGAAGAAAAAGGCCCGTAGACCCTCTCCCCCCTC CTCATCCTCCTCCTCGTCCTCCTCTTCCTCGTCAGATAGCAGTAACAGCA GTAGCAGTAGCAGCAGCAGCAGCAGCAGTAGCAGCAGCAGTAGTAGTAGT ACTAGTAGTAGTAGTGAAAGTGAGGATGAGGAAGAGAGGCAACAGGCGGC ACGCCGACGAGAGAAAAGGGAAAATTCTCAGACCAGCACAGCAGCTGCCA CCGTGGCTGCAGCTGCTGGTGCCGAGGCAGAGGGAGAGGAGGGAAGGAGG GGGAAGGAGCCGGAGGAGGGGGAGGGGGAGAGCATGGATGAGACGGACCG TGCGGAGGCGGCTCGTTTCAAGGCTCAAGTGCAAGGTGGAGGAGGGCGGT ACGTGGCTTCTTGCCTTCCCTCGTTCCCTCTCTCCTCCACTCTCTCCCTC TTTTCCTCCTACCGCTCTCGCCAAAATCTGAGTGTCATTTCAACCACACC CCTGCCCCCTCCGTCCCTCCCTCCATCCTTCCATCCTTCCCTCCCTTTTT CCCTGCCCCCTGCCCAACCACACCGACAGCGACGACAGCAGCGACGAGGA CGACGATATGGGCCCACGGCCGTTGGAAGACGACCTGGAGGGGGGAAGAG AGGGCGGGAGGTCTAGAAACTTCGGCGGTGCGCTCATGCCAGGCGAGGTA AGTGGAAAAGGAGGGAGGGAGGGAAGGCAGGGGGGAGGGAGGGCAGTGGA GAGGGAACCGCTCGTTTGTATGAAAATCGCCGTGTCCGTGCCCTTACTTA TCCCTCCCTCCCCCCTTCCCCCTCTTCCTCCTCCTCTGTCGGGGCAAAGC CATGGCGGATTATATGAAGGAGAACATGCGCATTTTTACTGTATCCCTAC CCCTACTGACCTTTCCCTTCCCTCCCTCCCTCCATCCTTCCCTTCTCCCT CCCTCCCTCCCTCTCTCCCTCCCTCCTTCCCTCTTCTTGCCCCAGGGCGA AGCCATTGCCCAGTACGCGGAGAAGAACATGCGCATTCCCCGACGAGGCG AGGTCGGGTGGCAGGGGGAGGAGATCGAGAGGCTCGAGGAACTGGGATAT GTCATGAGCGGTAGGAACAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG AGGGAGGGCGCGGTCTATCCTCCACATCGCTCACTTACTTACTCGTTGTG ATGTTTCGCACCATGCGCATTGGAATGACAGGGAATCGGCACAAGCGGAT GAATGCCATTCGAATCCGGAAGGAGAATCAGGTAGGGAGGGACATGCGTC TGTCTGTCGGCGTTAACGCCTTGCTGATACTCCTTCCTTCGCTCACGTCC TTTTCTCTCTGTATTCGATGGATTCCTGTGTGCTTGTTTGTCCTCTGTCC TCGTCTCCCTTCGCTACCACGCTTTTTTCCCAGTGCTTGACCTTCCTTTT CTTCCTTTCCCTCTCTTCTTCCCTCCCTCTCTCGGTTCCTTCTCACTCCT AGGTCTACACCGCCCTGGAAAAAAAAGCCCTGGCGCTCATACAGCTGGAG GAGAACAAACAAAAGGAAGCCACCCTCCTGGCCAATTTCAAGCAGGCGCT GGAGCAGCGCAAGGCGAAGGGGGTGGAAGTGGCCGGGGAAGGTGGAGAAG AAGGTGGAGGTGGGGGCAAGCTGGAGGCTTAGAGAAACGGCTGCTTTGTC CACCGCGACGACAAGGGTAAGAACTAGTAGGCTGAAGATCGCAAAACCAT TAAAAAGAAAGAAAGAGAAACATTGCGGTG
back to top

Coding sequence (CDS) from alignment at chr1:1604268..1606797-

>NO01G05730.2 ID=NO01G05730.2|Name=NO01G05730.2|organism=Nannochloropsis oceanica|type=CDS|length=1590bp|location=Sequence derived from alignment at chr1:1604268..1606797- (Nannochloropsis oceanica)
ATGCCATCGAGCCGAGAAGCACCTCGTGACGGCCGCGATGAACGACGAAG
AGACAGGAGCGGCAGCGGGGGGAGGGAACGTCGGGGAGGGAGGGGAAGCA
GGAGTAATAGTCCACCGTATCGACGTCGCTTATCCCGCTCTCGCTCTCGA
TCTCCACCTACCCGTCGGCAGCTAGAGCGGATGCGGGAGGAGCGTGAGAA
GGAGAGGGAACGAGGAGGAGATAGAGGAGATAAAGGGGACAGGGAGAGAA
GGAGGGATGAGGGAAGAGATATGGAAAGAGAGAGGGACCGCCGTCCTTCC
CCTCCTTCCGATTCGTACGGGCGCTACGGTGAACGAGGTAGGGATGGCAG
TGGAGGAGGACGGGTTGAAGGAGAGGAGAGGAGAGGAAGAGGAGGAAGTC
GCTGGGAAAGAGGAGGAGGAGGAGGAGGAGGAGACGAGTCATGGGGTCGG
AATGGTGGTGGTGGAGGAGGAAGCGCAGCAAGGGGGAATGATACCTCTTT
GCCAGGTGAGACTTATGAGGAGATGCGGCTGCGGAAAAGGAGGGAATTGA
GTGAGACTTCTACGGCGGCTCAAGATATCTGGGCCCGGTCGCCTACGCCG
CCTGCAGTGAGGGGAAAGAAGATGGGTCAATGTCGAAGGGAAGGCGGTGG
AGGGAGGAAGAAGAAAGAGGACATTATGGCGGTGAAGAGCGGAAAGAGGA
AGAAGAGGAAGGAGGAGGTGAATTCCAAGCGCAAGGATAAAGGCCAGGGC
TCCAATAATAGGAGGAAGAAGAAAAAGGCCCGTAGACCCTCTCCCCCCTC
CTCATCCTCCTCCTCGTCCTCCTCTTCCTCGTCAGATAGCAGTAACAGCA
GTAGCAGTAGCAGCAGCAGCAGCAGCAGTAGCAGCAGCAGTAGTAGTAGT
ACTAGTAGTAGTAGTGAAAGTGAGGATGAGGAAGAGAGGCAACAGGCGGC
ACGCCGACGAGAGAAAAGGGAAAATTCTCAGACCAGCACAGCAGCTGCCA
CCGTGGCTGCAGCTGCTGGTGCCGAGGCAGAGGGAGAGGAGGGAAGGAGG
GGGAAGGAGCCGGAGGAGGGGGAGGGGGAGAGCATGGATGAGACGGACCG
TGCGGAGGCGGCTCGTTTCAAGGCTCAAGTGCAAGGTGGAGGAGGGCGCG
ACGACAGCAGCGACGAGGACGACGATATGGGCCCACGGCCGTTGGAAGAC
GACCTGGAGGGGGGAAGAGAGGGCGGGAGGTCTAGAAACTTCGGCGGTGC
GCTCATGCCAGGCGAGGGCGAAGCCATTGCCCAGTACGCGGAGAAGAACA
TGCGCATTCCCCGACGAGGCGAGGTCGGGTGGCAGGGGGAGGAGATCGAG
AGGCTCGAGGAACTGGGATATGTCATGAGCGGGAATCGGCACAAGCGGAT
GAATGCCATTCGAATCCGGAAGGAGAATCAGGTAGGGAGGGACATGCGTC
TGTCTGTCGGCGTTAACGCCTTGCTGATACTCCTTCCTTCGCTCACGTCC
TTTTCTCTCTGTATTCGATGGATTCCTGTGTGCTTGTTTGTCCTCTGTCC
TCGTCTCCCTTCGCTACCACGCTTTTTTCCCAGTGCTTGA
back to top
Synonyms
Publications