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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:1604268..1606797 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G05730.1 vs.
Match: XP_009519063.1 (hypothetical protein PHYSODRAFT_485686 [Phytophthora sojae]; EGZ23775.1 hypothetical protein PHYSODRAFT_485686 [Phytophthora sojae]) HSP 1 Score: 163.7 bits (413), Expect = 1.600e-36 Identity = 91/153 (59.48%), Postives = 112/153 (73.20%), Query Frame = 0
Query: 364 ETDRAEAARFKAQVQGGGGRDDSSDEDDDMGPRPLEDDLEGGREGGRSRNFGGALMPGEGEAIAQYAEKNMRIPRRGEVGWQGEEIERLEELGYVMSGNRHKRMNAIRIRKENQVYTALEKKALALIQLEENKQKEATLLANFKQALEQRKAK 517
E ++ EA +FK VQG DDS D+++GP+PL E S N+G AL+PGEG AIAQ+ +KNMRIPRRGEVGW GEEIE LE LGYVMSG+RHKRMNA+RIRKENQVYTA EK+ALALI EE +Q+E ++ +FK+ L +R K
Sbjct: 6 EDEKREAVKFKEAVQGARHADDS---DEEIGPKPLPAAEE---TAASSLNYGKALLPGEGAAIAQFVQKNMRIPRRGEVGWNGEEIENLENLGYVMSGSRHKRMNAVRIRKENQVYTAEEKRALALINFEEKQQRENAIMNDFKEMLTERLTK 152
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G05730.1 ID=NO01G05730.1|Name=NO01G05730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1709bp ATGCCATCGAGCCGAGAAGCACCTCGTGACGGCCGCGATGAACGACGAAG AGACAGGAGCGGCAGCGGGGGGAGGGAACGTCGGGGAGGGAGGGGAAGCA GGAGTAATAGTCCACCGTATCGACGTCGCTTATCCCGCTCTCGCTCTCGA TCTCCACCTACCCGTCGGCAGCTAGAGCGGATGCGGGAGGAGCGTGAGAA GGAGAGGGAACGAGGAGGAGATAGAGGAGATAAAGGGGACAGGGAGAGAA GGAGGGATGAGGGAAGAGATATGGAAAGAGAGAGGGACCGCCGTCCTTCC CCTCCTTCCGATTCGTACGGGCGCTACGGTGAACGAGGTAGGGATGGCAG TGGAGGAGGACGGGTTGAAGGAGAGGAGAGGAGAGGAAGAGGAGGAAGTC GCTGGGAAAGAGGAGGAGGAGGAGGAGGAGGAGACGAGTCATGGGGTCGG AATGGTGGTGGTGGAGGAGGAAGCGCAGCAAGGGGGAATGATACCTCTTT GCCAGGTGAGACTTATGAGGAGATGCGGCTGCGGAAAAGGAGGGAATTGA GTGAGACTTCTACGGCGGCTCAAGATATCTGGGCCCGGTCGCCTACGCCG CCTGCAGTGAGGGGAAAGAAGATGGGTCAATGTCGAAGGGAAGGCGGTGG AGGGAGGAAGAAGAAAGAGGACATTATGGCGGTGAAGAGCGGAAAGAGGA AGAAGAGGAAGGAGGAGGTGAATTCCAAGCGCAAGGATAAAGGCCAGGGC TCCAATAATAGGAGGAAGAAGAAAAAGGCCCGTAGACCCTCTCCCCCCTC CTCATCCTCCTCCTCGTCCTCCTCTTCCTCGTCAGATAGCAGTAACAGCA GTAGCAGTAGCAGCAGCAGCAGCAGCAGTAGCAGCAGCAGTAGTAGTAGT ACTAGTAGTAGTAGTGAAAGTGAGGATGAGGAAGAGAGGCAACAGGCGGC ACGCCGACGAGAGAAAAGGGAAAATTCTCAGACCAGCACAGCAGCTGCCA CCGTGGCTGCAGCTGCTGGTGCCGAGGCAGAGGGAGAGGAGGGAAGGAGG GGGAAGGAGCCGGAGGAGGGGGAGGGGGAGAGCATGGATGAGACGGACCG TGCGGAGGCGGCTCGTTTCAAGGCTCAAGTGCAAGGTGGAGGAGGGCGCG ACGACAGCAGCGACGAGGACGACGATATGGGCCCACGGCCGTTGGAAGAC GACCTGGAGGGGGGAAGAGAGGGCGGGAGGTCTAGAAACTTCGGCGGTGC GCTCATGCCAGGCGAGGGCGAAGCCATTGCCCAGTACGCGGAGAAGAACA TGCGCATTCCCCGACGAGGCGAGGTCGGGTGGCAGGGGGAGGAGATCGAG AGGCTCGAGGAACTGGGATATGTCATGAGCGGGAATCGGCACAAGCGGAT GAATGCCATTCGAATCCGGAAGGAGAATCAGGTCTACACCGCCCTGGAAA AAAAAGCCCTGGCGCTCATACAGCTGGAGGAGAACAAACAAAAGGAAGCC ACCCTCCTGGCCAATTTCAAGCAGGCGCTGGAGCAGCGCAAGGCGAAGGG GGTGGAAGTGGCCGGGGAAGGTGGAGAAGAAGGTGGAGGTGGGGGCAAGC TGGAGGCTTAGAGAAACGGCTGCTTTGTCCACCGCGACGACAAGGGTAAG AACTAGTAGGCTGAAGATCGCAAAACCATTAAAAAGAAAGAAAGAGAAAC ATTGCGGTG back to topprotein sequence of NO01G05730.1 >NO01G05730.1-protein ID=NO01G05730.1-protein|Name=NO01G05730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=537bp MPSSREAPRDGRDERRRDRSGSGGRERRGGRGSRSNSPPYRRRLSRSRSR SPPTRRQLERMREEREKERERGGDRGDKGDRERRRDEGRDMERERDRRPS PPSDSYGRYGERGRDGSGGGRVEGEERRGRGGSRWERGGGGGGGDESWGR NGGGGGGSAARGNDTSLPGETYEEMRLRKRRELSETSTAAQDIWARSPTP PAVRGKKMGQCRREGGGGRKKKEDIMAVKSGKRKKRKEEVNSKRKDKGQG SNNRRKKKKARRPSPPSSSSSSSSSSSSDSSNSSSSSSSSSSSSSSSSSS TSSSSESEDEEERQQAARRREKRENSQTSTAAATVAAAAGAEAEGEEGRR GKEPEEGEGESMDETDRAEAARFKAQVQGGGGRDDSSDEDDDMGPRPLED DLEGGREGGRSRNFGGALMPGEGEAIAQYAEKNMRIPRRGEVGWQGEEIE RLEELGYVMSGNRHKRMNAIRIRKENQVYTALEKKALALIQLEENKQKEA TLLANFKQALEQRKAKGVEVAGEGGEEGGGGGKLEA* back to topmRNA from alignment at chr1:1604268..1606797- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G05730.1 ID=NO01G05730.1|Name=NO01G05730.1|organism=Nannochloropsis oceanica|type=mRNA|length=2530bp|location=Sequence derived from alignment at chr1:1604268..1606797- (Nannochloropsis oceanica) ATGCCATCGAGCCGAGAAGCACCTCGTGACGGCCGCGATGAACGACGAAG
AGACAGGAGCGGCAGCGGGGGGAGGGAACGTCGGGGAGGGAGGGGAAGCA
GGAGTAATAGTCCACCGTATCGACGTCGCTTATCCCGCTCTCGCTCTCGA
TCTCCACCTACCCGTCGGCAGCTAGAGCGGATGCGGGAGGAGCGTGAGAA
GGAGAGGGAACGAGGAGGAGATAGAGGAGATAAAGGGGACAGGGAGAGAA
GGAGGGATGAGGGAAGAGATATGGAAAGAGAGAGGGACCGCCGTCCTTCC
CCTCCTTCCGATTCGTACGGGCGCTACGGTGAACGAGGTAGGGATGGCAG
TGGAGGAGGACGGGTTGAAGGAGAGGAGAGGAGAGGAAGAGGAGGAAGTC
GCTGGGAAAGAGGAGGAGGAGGAGGAGGAGGAGACGAGTCATGGGGTCGG
AATGGTGGTGGTGGAGGAGGAAGCGCAGCAAGGGGGAATGATACCTCTTT
GCCAGGTGAGACTTATGAGGAGATGCGGCTGCGGAAAAGGAGGGAATTGA
GTGAGACTTCTACGGCGGCTCAAGATATCTGGGCCCGGTCGCCTACGCCG
CCTGCAGTGAGGGGAAAGAAGATGGGTCAATGTCGAAGGGAAGGCGGTGG
AGGGAGGAAGAAGAAAGAGGACATTATGGCGGTGAAGAGCGGAAAGAGGA
AGAAGAGGAAGGAGGAGGTGAATTCCAAGCGCAAGGATAAAGGCCAGGGC
TCCAATAATAGGAGGAAGAAGAAAAAGGCCCGTAGACCCTCTCCCCCCTC
CTCATCCTCCTCCTCGTCCTCCTCTTCCTCGTCAGATAGCAGTAACAGCA
GTAGCAGTAGCAGCAGCAGCAGCAGCAGTAGCAGCAGCAGTAGTAGTAGT
ACTAGTAGTAGTAGTGAAAGTGAGGATGAGGAAGAGAGGCAACAGGCGGC
ACGCCGACGAGAGAAAAGGGAAAATTCTCAGACCAGCACAGCAGCTGCCA
CCGTGGCTGCAGCTGCTGGTGCCGAGGCAGAGGGAGAGGAGGGAAGGAGG
GGGAAGGAGCCGGAGGAGGGGGAGGGGGAGAGCATGGATGAGACGGACCG
TGCGGAGGCGGCTCGTTTCAAGGCTCAAGTGCAAGGTGGAGGAGGGCGGT
ACGTGGCTTCTTGCCTTCCCTCGTTCCCTCTCTCCTCCACTCTCTCCCTC
TTTTCCTCCTACCGCTCTCGCCAAAATCTGAGTGTCATTTCAACCACACC
CCTGCCCCCTCCGTCCCTCCCTCCATCCTTCCATCCTTCCCTCCCTTTTT
CCCTGCCCCCTGCCCAACCACACCGACAGCGACGACAGCAGCGACGAGGA
CGACGATATGGGCCCACGGCCGTTGGAAGACGACCTGGAGGGGGGAAGAG
AGGGCGGGAGGTCTAGAAACTTCGGCGGTGCGCTCATGCCAGGCGAGGTA
AGTGGAAAAGGAGGGAGGGAGGGAAGGCAGGGGGGAGGGAGGGCAGTGGA
GAGGGAACCGCTCGTTTGTATGAAAATCGCCGTGTCCGTGCCCTTACTTA
TCCCTCCCTCCCCCCTTCCCCCTCTTCCTCCTCCTCTGTCGGGGCAAAGC
CATGGCGGATTATATGAAGGAGAACATGCGCATTTTTACTGTATCCCTAC
CCCTACTGACCTTTCCCTTCCCTCCCTCCCTCCATCCTTCCCTTCTCCCT
CCCTCCCTCCCTCTCTCCCTCCCTCCTTCCCTCTTCTTGCCCCAGGGCGA
AGCCATTGCCCAGTACGCGGAGAAGAACATGCGCATTCCCCGACGAGGCG
AGGTCGGGTGGCAGGGGGAGGAGATCGAGAGGCTCGAGGAACTGGGATAT
GTCATGAGCGGTAGGAACAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGCGCGGTCTATCCTCCACATCGCTCACTTACTTACTCGTTGTG
ATGTTTCGCACCATGCGCATTGGAATGACAGGGAATCGGCACAAGCGGAT
GAATGCCATTCGAATCCGGAAGGAGAATCAGGTAGGGAGGGACATGCGTC
TGTCTGTCGGCGTTAACGCCTTGCTGATACTCCTTCCTTCGCTCACGTCC
TTTTCTCTCTGTATTCGATGGATTCCTGTGTGCTTGTTTGTCCTCTGTCC
TCGTCTCCCTTCGCTACCACGCTTTTTTCCCAGTGCTTGACCTTCCTTTT
CTTCCTTTCCCTCTCTTCTTCCCTCCCTCTCTCGGTTCCTTCTCACTCCT
AGGTCTACACCGCCCTGGAAAAAAAAGCCCTGGCGCTCATACAGCTGGAG
GAGAACAAACAAAAGGAAGCCACCCTCCTGGCCAATTTCAAGCAGGCGCT
GGAGCAGCGCAAGGCGAAGGGGGTGGAAGTGGCCGGGGAAGGTGGAGAAG
AAGGTGGAGGTGGGGGCAAGCTGGAGGCTTAGAGAAACGGCTGCTTTGTC
CACCGCGACGACAAGGGTAAGAACTAGTAGGCTGAAGATCGCAAAACCAT
TAAAAAGAAAGAAAGAGAAACATTGCGGTG back to topCoding sequence (CDS) from alignment at chr1:1604268..1606797- >NO01G05730.1 ID=NO01G05730.1|Name=NO01G05730.1|organism=Nannochloropsis oceanica|type=CDS|length=1611bp|location=Sequence derived from alignment at chr1:1604268..1606797- (Nannochloropsis oceanica) ATGCCATCGAGCCGAGAAGCACCTCGTGACGGCCGCGATGAACGACGAAG AGACAGGAGCGGCAGCGGGGGGAGGGAACGTCGGGGAGGGAGGGGAAGCA GGAGTAATAGTCCACCGTATCGACGTCGCTTATCCCGCTCTCGCTCTCGA TCTCCACCTACCCGTCGGCAGCTAGAGCGGATGCGGGAGGAGCGTGAGAA GGAGAGGGAACGAGGAGGAGATAGAGGAGATAAAGGGGACAGGGAGAGAA GGAGGGATGAGGGAAGAGATATGGAAAGAGAGAGGGACCGCCGTCCTTCC CCTCCTTCCGATTCGTACGGGCGCTACGGTGAACGAGGTAGGGATGGCAG TGGAGGAGGACGGGTTGAAGGAGAGGAGAGGAGAGGAAGAGGAGGAAGTC GCTGGGAAAGAGGAGGAGGAGGAGGAGGAGGAGACGAGTCATGGGGTCGG AATGGTGGTGGTGGAGGAGGAAGCGCAGCAAGGGGGAATGATACCTCTTT GCCAGGTGAGACTTATGAGGAGATGCGGCTGCGGAAAAGGAGGGAATTGA GTGAGACTTCTACGGCGGCTCAAGATATCTGGGCCCGGTCGCCTACGCCG CCTGCAGTGAGGGGAAAGAAGATGGGTCAATGTCGAAGGGAAGGCGGTGG AGGGAGGAAGAAGAAAGAGGACATTATGGCGGTGAAGAGCGGAAAGAGGA AGAAGAGGAAGGAGGAGGTGAATTCCAAGCGCAAGGATAAAGGCCAGGGC TCCAATAATAGGAGGAAGAAGAAAAAGGCCCGTAGACCCTCTCCCCCCTC CTCATCCTCCTCCTCGTCCTCCTCTTCCTCGTCAGATAGCAGTAACAGCA GTAGCAGTAGCAGCAGCAGCAGCAGCAGTAGCAGCAGCAGTAGTAGTAGT ACTAGTAGTAGTAGTGAAAGTGAGGATGAGGAAGAGAGGCAACAGGCGGC ACGCCGACGAGAGAAAAGGGAAAATTCTCAGACCAGCACAGCAGCTGCCA CCGTGGCTGCAGCTGCTGGTGCCGAGGCAGAGGGAGAGGAGGGAAGGAGG GGGAAGGAGCCGGAGGAGGGGGAGGGGGAGAGCATGGATGAGACGGACCG TGCGGAGGCGGCTCGTTTCAAGGCTCAAGTGCAAGGTGGAGGAGGGCGCG ACGACAGCAGCGACGAGGACGACGATATGGGCCCACGGCCGTTGGAAGAC GACCTGGAGGGGGGAAGAGAGGGCGGGAGGTCTAGAAACTTCGGCGGTGC GCTCATGCCAGGCGAGGGCGAAGCCATTGCCCAGTACGCGGAGAAGAACA TGCGCATTCCCCGACGAGGCGAGGTCGGGTGGCAGGGGGAGGAGATCGAG AGGCTCGAGGAACTGGGATATGTCATGAGCGGGAATCGGCACAAGCGGAT GAATGCCATTCGAATCCGGAAGGAGAATCAGGTCTACACCGCCCTGGAAA AAAAAGCCCTGGCGCTCATACAGCTGGAGGAGAACAAACAAAAGGAAGCC ACCCTCCTGGCCAATTTCAAGCAGGCGCTGGAGCAGCGCAAGGCGAAGGG GGTGGAAGTGGCCGGGGAAGGTGGAGAAGAAGGTGGAGGTGGGGGCAAGC TGGAGGCTTAG back to top
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