|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:1575058..1579726 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G05660.1 vs.
Match: SCJ21425.1 (Bifunctional protein FolD [uncultured Clostridium sp.]) HSP 1 Score: 194.9 bits (494), Expect = 6.500e-46 Identity = 123/318 (38.68%), Postives = 178/318 (55.97%), Query Frame = 0
Query: 71 LDGRELSRRMRAAIKAQVEDFKEEHGYAPHLAIITVGERPPEEAQRRALFASGPGEASWFDKVKGAKEVGMDVTHIVMPGTASFEDVRGEIDRLARLWNVHGIMVEQPLPEHLKPFRLDIWRTIRPHKDVDGMHSANAGRLADFASGLGRLGEHRFPLEYNNLPTTALGAMQYLDMCKIAIKPGARVLVIGRSKLVGLPLALLLLGRDATVTIAHSKTPTEDLKAMCKEADVVVGAVGRPRLIEPDWIKKDAVVLNVGTTFVPEEKAMVGDVDKRGMGQVTDLLTPSPYVDAETGAVGPSGVGPLTLPMLLYSTLASA 389
+DG+ LS ++R +K +V FK E+GY P L +I VGE P + R +K +G E GM I MP + E++ I++L R VHGI+V+ PLP+ + L + RTI P KDVDG H NAG+L +GE + T G M+ L+ +I ++ G +V+GRS +VG P+++LLL R+ATVTI HS+T ++LK +C+ ADV+V AVG+ LI D +K AVV++VG +P+ K +VGDVD + V +TP P GVGP+T+ MLL +TL +A
Sbjct: 6 MDGKGLSAKIRGQLKERVAAFKAEYGYVPGLTVILVGEDPASQIYVR-------------NKERGCNEAGMTSDVIRMPAQTTQEELLALIEKLNRDDKVHGILVQLPLPKGID--ELSVLRTIDPAKDVDGFHVVNAGKLF--------IGEKAL------VACTPKGIMRLLEEYEIDLE-GKNAVVVGRSNIVGKPISMLLLQRNATVTICHSRT--KNLKDICRGADVLVAAVGKANLITGDMVKPGAVVIDVGMNRLPDSKKVVGDVDFESVEPVAGYITPV-----------PGGVGPMTIAMLLENTLEAA 280
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G05660.1 ID=NO01G05660.1|Name=NO01G05660.1|organism=Nannochloropsis oceanica|type=mRNA|length=2504bp ATAGATACGTAGAGGCGGGTGCAACTACCTATGCCTGTACACATAGAAAG ATCAAATGACAACAAACAAAGAAGCTTACGGCACGGAGCGTAGGCATCCG GCCGATAGCCACAGGGACGGCTTGACGTTCGATCTCAGAAGCAAGTTGTC AACAGACCTCGTCGTTTCCCGACTTTAAAAACGTGCCCTTCCCGACACCT TTCTCGTGTTTGTATGCTACACAGGGGCACGTCATTTGACTTGACAAGAA TCTTGCTCGACCTCCCGCCCCATTTGTCCACCACCCACAAAAAGCGAGGA AGCACATGGGCGGCTACCGAGCAAAGGGATGGTCACATATGCTTCAATCC TTCCATGCAAGTCGAGGAGACGGAGTGGCTTCTTTTTTTAAGTTGCGGGC TTGAGATGGGAGCACGTACAATTCATGCGGCTCTCCTGCCTACTCCAATT CATCGTCTTACCCTGCTTGTAATTAGTAGTATTTCCTCAGTGCGTCGTTG CAGCAGAGAGCGCCTCAACTTCTATTCTACACATACGGTACAGGACGCAA TACTCACAAGCAGTGGCAGTGTAGGCAGCGATAAAATATGGCTCTAGGGT CCTCCGCCACTTTTGCCCGTGCCATCGCCCGGCGCATCTTCCTCTTTACC CCCATGACCCACCCCACCACCGCCCGCTTCGCAGCCTCTGCCTCTGGTCC CCATTTCATCAGTCGAAGCAGCAGCACCCGCAGAGGAATGTTTCCCGACT TGCCCATGGAGGACGATTCTGCCTCCTCTTCAGACGGGCCCACCATACTG GACGGCCGAGAGCTGAGCCGACGCATGCGTGCCGCCATCAAGGCGCAGGT CGAGGACTTCAAGGAGGAACACGGTTACGCACCTCATCTGGCAATCATTA CAGTTGGCGAACGCCCGCCAGAGGAGGCTCAGCGACGAGCTCTCTTTGCG TCCGGGCCTGGGGAAGCCTCGTGGTTCGACAAGGTCAAGGGGGCCAAGGA GGTCGGCATGGACGTGACCCACATCGTCATGCCCGGTACGGCCTCCTTCG AGGACGTGCGTGGGGAGATCGATCGCTTGGCACGGCTGTGGAATGTGCAC GGCATAATGGTGGAGCAGCCCCTCCCCGAGCACCTGAAACCCTTCCGCCT CGACATCTGGAGGACGATTCGCCCGCACAAGGACGTGGATGGCATGCACT CGGCCAATGCCGGCCGACTCGCCGACTTTGCGTCCGGCTTGGGGCGTCTG GGAGAACACCGGTTCCCTCTTGAGTACAACAACCTCCCCACGACGGCTCT GGGGGCTATGCAGTACCTCGACATGTGCAAGATCGCCATTAAGCCCGGGG CGCGTGTCCTGGTCATCGGCCGCTCCAAGCTTGTGGGCCTCCCCCTGGCC CTCCTTTTGCTCGGCAGGGACGCCACCGTTACCATTGCCCACAGCAAAAC CCCAACGGAGGACTTAAAAGCCATGTGCAAGGAGGCGGATGTGGTGGTGG GCGCCGTGGGCAGACCCCGGCTCATCGAACCTGACTGGATCAAGAAAGAT GCCGTGGTGCTGAACGTAGGCACGACTTTCGTGCCGGAGGAGAAGGCCAT GGTGGGTGACGTGGACAAGAGGGGGATGGGCCAAGTAACGGACCTCCTAA CGCCCTCGCCGTATGTGGATGCCGAGACGGGCGCGGTGGGTCCTAGTGGC GTGGGACCGTTGACGTTGCCCATGCTCCTCTACAGCACCCTGGCCAGTGC CTTGCGACAAGGACGAGCGGCCAAGCACCGCGAGAAGAACAAAGCGAGCA TCGGAGTGCAGCCCACCACCCCCGTCCTGACCTCCAACGAGCTCCGTGCC GCATTGGAGGGCCCAGGGGGGTTGAAGGAGAGCGGGTGGACGCTGGGGAG AGACGAGGAAGGCGGGCACCCTGTGCTGCGCAAGACGTGGCTATGCCGGG ACTTTAAAGAGGCCACAAATCTGGTCACTGAGATCCGACGCATCGCCGAC CGCGAGAATCACCATCCGATCCTATCCATCACCCGTCACAAGCCAGAGGA CGGTTCCATCTGGTGCGACAACGACATGCCTTCCGACCTGAACGTTGAGT TGTCCTCGGCCGCTGTGCAGGACCTGACCCACTTCGACATCACGCAAGCG CGCTCCTTGTCCGCCCTGGTCTGCGAGGCCCCGGGGGACCGAAAATATCA AGGACGAGACTGAGGCCCGGTGATGAGGGTGGAGGGATGAAAGAAGGGGA AGAAGGAGAAGGCGAGAAGGCGAAGGCAAGGGGAGCGCATAGGCTGTCTT TGCTTTTTTCGGGGGTGGGGGGAGGCACTAACTCATCGTCTTTCAAGTCG GATTTTAGCAATATTTTGGGTTAGAGGGCTAGCGGGATGGGGTTTTGGAA GGGGAGAGAAGAGAAGAGAAAAGCGACGGGTGTTGGCATGCATGCATTTA AAGATAAAGCACGAGCTCCAGCTTGAAAAGAACGATCCATCAAAGCAGTC GATA back to topprotein sequence of NO01G05660.1 >NO01G05660.1-protein ID=NO01G05660.1-protein|Name=NO01G05660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=542bp MALGSSATFARAIARRIFLFTPMTHPTTARFAASASGPHFISRSSSTRRG MFPDLPMEDDSASSSDGPTILDGRELSRRMRAAIKAQVEDFKEEHGYAPH LAIITVGERPPEEAQRRALFASGPGEASWFDKVKGAKEVGMDVTHIVMPG TASFEDVRGEIDRLARLWNVHGIMVEQPLPEHLKPFRLDIWRTIRPHKDV DGMHSANAGRLADFASGLGRLGEHRFPLEYNNLPTTALGAMQYLDMCKIA IKPGARVLVIGRSKLVGLPLALLLLGRDATVTIAHSKTPTEDLKAMCKEA DVVVGAVGRPRLIEPDWIKKDAVVLNVGTTFVPEEKAMVGDVDKRGMGQV TDLLTPSPYVDAETGAVGPSGVGPLTLPMLLYSTLASALRQGRAAKHREK NKASIGVQPTTPVLTSNELRAALEGPGGLKESGWTLGRDEEGGHPVLRKT WLCRDFKEATNLVTEIRRIADRENHHPILSITRHKPEDGSIWCDNDMPSD LNVELSSAAVQDLTHFDITQARSLSALVCEAPGDRKYQGRD* back to topmRNA from alignment at chr1:1575058..1579726+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G05660.1 ID=NO01G05660.1|Name=NO01G05660.1|organism=Nannochloropsis oceanica|type=mRNA|length=4669bp|location=Sequence derived from alignment at chr1:1575058..1579726+ (Nannochloropsis oceanica) ATAGATACGTAGAGGCGGGTGCAACTACCTATGCCTGTACACATAGAAAG
ATCAAATGACAACAAACAAAGAAGCTTACGGCACGGAGCGTAGGCATCCG
GCCGATAGCCACAGGGACGGCTTGACGTTCGATCTCAGAAGCAAGTTGTC
AACAGACCTCGTCGTTTCCCGACTTTAAAAACGTGCCCTTCCCGACACCT
TTCTCGTGTTTGTATGCTACACAGGGGCACGTCATTTGACTTGACAAGAA
TCTTGCTCGACCTCCCGCCCCATTTGTCCACCACCCACAAAAAGCGAGGA
AGCACATGGGCGGCTACCGAGCAAAGGGATGGTCACATATGCTTCAATCC
TTCCATGCAAGTCGAGGAGACGGAGTGGCTTCTTTTTTTAAGTTGCGGGC
TTGAGATGGGAGCACGTACAATTCATGCGGCTCTCCTGCCTACTCCAATT
CATCGTCTTACCCTGCTTGTAATTAGTAGTATTTCCTCAGTGCGTCGTTG
CAGCAGAGAGCGCCTCAACTTCTATTCTACACATACGGTACAGGACGCAA
TACTCACAAGCAGTGGCAGTGTAGGCAGCGATAAAATATGGCTCTAGGGT
CCTCCGCCACTTTTGCCCGTGCCATCGCCCGGCGCATCTTCCTCTTTACC
CCCATGACCCACCCCACCACCGCCCGCTTCGCAGCCTCTGCCTCTGGTCC
CCATTTCATCAGTCGAAGCAGCAGCACCCGCAGAGGAATGTTTCCCGACT
TGCCCATGGAGGACGATTCTGCCTCCTCTTCAGACGGGCCCACCATACTG
GACGGCCGAGAGCTGAGCCGACGCATGCGTGCCGCCATCAAGGCGCAGGT
AAGCCAGTAGTGCATGCCCCGGCCCAATTGCTTTGTCCTCTTCTCCTCTC
TCGATCTCACCATGTCTTCCGTGTATTTCCATGGTTTTGACAACGATCTT
TAAGCATCGTTTGCACAAATGCCCGTCACTAAATGAGACAGCCATTTTTC
TGACCTCCCCTATCCTTTCATGCCCTCCCTCCCTCCCTCTCTCCCTCCCT
CCCTCCCTCCCTCCTCCTGCCCCTAGGTCGAGGACTTCAAGGAGGAACAC
GGTTACGCACCTCATCTGGCAATCATTACAGTTGGCGAACGCCCGCCAGA
GGAGGCTCAGCGGTGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGATGGA
AGGAGTTATAGAGACGGACGGTTGACGGAAGGCGCTACATCCAAATGATC
GGAAGGGCAAATCAAGTGACTGGCTGCATCCATGCAACTCTGACCCCCTC
CATTTCTCCCCCTCTCCCTCTCTCCACGCCCGCGATGACAGACGAGCTCT
CTTTGCGTCCGGGCCTGGGGAAGCCTCGTGGTTCGACAAGGTCAAGGGGG
CCAAGGAGGTGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAAG
GGGTGTTGGACGGAGACAAGGAGTAGGTAGGTCTTGTTGGTGCACGAGGA
GAAAGGGCGCGTGCTGCGCGTGCTGGCAGTTTCGATCCTTCCGCCTTCCC
ATGCTCAGCCTGCTGTGTCATACCCACCGCTCCCATCCTCCCTCCCCTCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCTTTCCTCCAGGTCGGCATGGACGTGACCCACATC
GTCATGCCCGGTACGGCCTCCTTCGAGGACGTGCGTGGGGAGATCGATCG
CTTGGCACGGCTGTGGAATGTGCACGGCATAATGGTGGAGCAGCCCCTCC
CCGAGCACCTGAAACCCTTCCGCCTCGACATCTGGAGGACGATTCGCCCG
CACAAGGTCCAGGAAGGAGGGAGGGAGGGAAGGACGGAGGGAGGGAAGGA
CGGAGGGGGGGCAGGGCAGTGATATATCCATCTATGGATCAAACGTTCCT
CGTCATGGGTGAAGATCCATCACCCACCTTCCCGTCCCTCCCTCCCTCCC
TCCCCGCCTCAGGACGTGGATGGCATGCACTCGGCCAATGCCGGCCGACT
CGCCGACTTTGCGTCCGGCTTGGGGCGTCTGGGAGAACACCGGTAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGTTTGGCTGTGGGTGGGTAGAG
TATTTTGGTGTCGTTGAAACGGAAGAGACGCAGTATCTCTCCATCCACCC
AACTGCTGCTCCTCCCGCAAGTTGACTCATCCCTCCCCTTCCTTCCCTCC
CTCCCTCCCTCCCTCTCCAGGTTCCCTCTTGAGTACAACAACCTCCCCAC
GACGGCTCTGGGGGCTATGCAGTACCTCGACATGTGCAAGATCGCCATTA
AGCCCGGGGCGCGTGTCCTGGGTGAGGAGGGAGGGAGGGAGGGAGGGAGG
GGGAGGGGATGATTCGTGATGATAGACACTTACCTCTACGCCCTATGGTC
ACTCCCGGCCGTCAACGTCTCGTTCCATACCTCTCCCTCCCTCCCCTTCT
CCCTCCCTCCTTCTCCAGTCATCGGCCGCTCCAAGCTTGTGGGCCTCCCC
CTGGCCCTCCTTTTGCTCGGCAGGGACGCCACCGTTACCATTGCCCACAG
CAAAACCCCAACGGAGGACTTAAAAGCCATGTGCAAGGAGGCGGATGTGG
TGGTGGGCGCCGTGGGCAGACCCCGGCTCATCGAACCTGACTGGATCAAG
AAAGGCGAGTCTTTTCCCCTCCCTCCTCCCCTCCCTCCTCCCCTCCCTCT
TGCCCTCCCTCCTGGCTCTTCGAAGGCACTGATTGGTCTCCCTCCTCCCT
CCCCCTCCTCCTCCCCCTTCCTTCCTCCTCAGATGCCGTGGTGCTGAACG
TAGGCACGACTTTCGTGCCGGAGGAGAAGGCCATGGTGGGTGACGTGGAC
AAGAGGGGGATGGGCCAAGTAACGGACCTCCTAACGCCCTCGCCGTATGT
GGATGCCGGTACAGAGGACGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGATGACTGCTTATTGCCGGCGACCCAGCTCATGGACCATTTGTTTCC
TCCTTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCC
CCTCCCTCCCTCCCTCCCTCCCTCTGTCCCTGCAGAGACGGGCGCGGTGG
GTCCTAGTGGCGTGGGACCGTTGACGTTGCCCATGCTCCTCTACAGCACC
CTGGCCAGTGCCTTGTGAGCAGGGAGGGAGGGAGGGAGGGAGGGAGGGGA
GGAAGAAGGAGGGAAAGAGGTTTCCTTTACGCTTAATCTCTCTCGAGCCC
AGGCATGCAAACCGTCACTCCCACCCTTCCGTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTTCCTCAGGCGACAAGGACGAGCGGCCAAGCACCGCGAGAA
GAACAAAGCGAGCATCGGAGTGCAGCCCACCACCCCCGTCCTGACCTCCA
ACGAGCTCCGTGCCGCATTGGAGGGCCCAGGGGGGTTGAAGGAGAGCGGG
TGGACGCTGGGGAGAGACGAGGAAGGTAATGATAGAAGAGAGAGGAGAAC
GGAGTGCGCAGGAGGGAGGGCAAGCACGCGCAGAAGGAGGACGGGTGCTC
TCCTCTCCGAAAAACATTAAATTGATAATTTTGATTGTAACGACCCCTCC
CTCACTCCATCCCGTCCTCCCTCCCGCCCTCCCTCCCGCCCTCCCTCCCA
GGCGGGCACCCTGTGCTGCGCAAGACGTGGCTATGCCGGGACTTTAAAGA
GGCCACAAATCTGGTCACTGAGATCCGACGCATCGCCGACCGCGAGAATC
ACCATCCGGTACGATCGAACGCCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCTTTCCCTCTCTCCCTCCCCGCTTCCCTCCTCGCATGTGCTT
CACGGATTGACAAGACCCACGAGATCCCCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCTAGATCCTATCCATCACCCGTCACAAGCCAGAGGACGGT
TCCATCTGGTGCGACAACGACATGCCTTCCGACCTGAACGTTGAGTTGTC
CTCGGCCGCTGTGCAGGTAGGAAAGGGAAGGCTGGAGGGATGGAAGGAAG
TAAAAGGGCAAGGGTAGGAGGGATAAAATAAGCGAAAGAGAAAGGAGGGA
TTTGGTATTTTCATACGGGTTTGCTGGCTCCCCCTTTCCATCTGATATAC
CTCATTCTTTCCTCACTCACTCCCTCCCTCCCTCCCTCCCTCCCTCCCTT
CCTCCCTCCCTTCCTCCCTCTCCCTGCATCTCCAGGACCTGACCCACTTC
GACATCACGCAAGCGCGCTCCTTGTCCGCCCTGGTCTGCGAGGCCCCGGG
GGACCGAAAATATCAAGGACGAGACTGAGGCCCGGTGATGAGGGTGGAGG
GATGAAAGAAGGGGAAGAAGGAGAAGGCGAGAAGGCGAAGGCAAGGGGAG
CGCATAGGCTGTCTTTGCTTTTTTCGGGGGTGGGGGGAGGCACTAACTCA
TCGTCTTTCAAGTCGGATTTTAGCAATATTTTGGGTTAGAGGGCTAGCGG
GATGGGGTTTTGGAAGGGGAGAGAAGAGAAGAGAAAAGCGACGGGTGTTG
GCATGCATGCATTTAAAGATAAAGCACGAGCTCCAGCTTGAAAAGAACGA
TCCATCAAAGCAGTCGATA back to topCoding sequence (CDS) from alignment at chr1:1575058..1579726+ >NO01G05660.1 ID=NO01G05660.1|Name=NO01G05660.1|organism=Nannochloropsis oceanica|type=CDS|length=1626bp|location=Sequence derived from alignment at chr1:1575058..1579726+ (Nannochloropsis oceanica) ATGGCTCTAGGGTCCTCCGCCACTTTTGCCCGTGCCATCGCCCGGCGCAT CTTCCTCTTTACCCCCATGACCCACCCCACCACCGCCCGCTTCGCAGCCT CTGCCTCTGGTCCCCATTTCATCAGTCGAAGCAGCAGCACCCGCAGAGGA ATGTTTCCCGACTTGCCCATGGAGGACGATTCTGCCTCCTCTTCAGACGG GCCCACCATACTGGACGGCCGAGAGCTGAGCCGACGCATGCGTGCCGCCA TCAAGGCGCAGGTCGAGGACTTCAAGGAGGAACACGGTTACGCACCTCAT CTGGCAATCATTACAGTTGGCGAACGCCCGCCAGAGGAGGCTCAGCGACG AGCTCTCTTTGCGTCCGGGCCTGGGGAAGCCTCGTGGTTCGACAAGGTCA AGGGGGCCAAGGAGGTCGGCATGGACGTGACCCACATCGTCATGCCCGGT ACGGCCTCCTTCGAGGACGTGCGTGGGGAGATCGATCGCTTGGCACGGCT GTGGAATGTGCACGGCATAATGGTGGAGCAGCCCCTCCCCGAGCACCTGA AACCCTTCCGCCTCGACATCTGGAGGACGATTCGCCCGCACAAGGACGTG GATGGCATGCACTCGGCCAATGCCGGCCGACTCGCCGACTTTGCGTCCGG CTTGGGGCGTCTGGGAGAACACCGGTTCCCTCTTGAGTACAACAACCTCC CCACGACGGCTCTGGGGGCTATGCAGTACCTCGACATGTGCAAGATCGCC ATTAAGCCCGGGGCGCGTGTCCTGGTCATCGGCCGCTCCAAGCTTGTGGG CCTCCCCCTGGCCCTCCTTTTGCTCGGCAGGGACGCCACCGTTACCATTG CCCACAGCAAAACCCCAACGGAGGACTTAAAAGCCATGTGCAAGGAGGCG GATGTGGTGGTGGGCGCCGTGGGCAGACCCCGGCTCATCGAACCTGACTG GATCAAGAAAGATGCCGTGGTGCTGAACGTAGGCACGACTTTCGTGCCGG AGGAGAAGGCCATGGTGGGTGACGTGGACAAGAGGGGGATGGGCCAAGTA ACGGACCTCCTAACGCCCTCGCCGTATGTGGATGCCGAGACGGGCGCGGT GGGTCCTAGTGGCGTGGGACCGTTGACGTTGCCCATGCTCCTCTACAGCA CCCTGGCCAGTGCCTTGCGACAAGGACGAGCGGCCAAGCACCGCGAGAAG AACAAAGCGAGCATCGGAGTGCAGCCCACCACCCCCGTCCTGACCTCCAA CGAGCTCCGTGCCGCATTGGAGGGCCCAGGGGGGTTGAAGGAGAGCGGGT GGACGCTGGGGAGAGACGAGGAAGGCGGGCACCCTGTGCTGCGCAAGACG TGGCTATGCCGGGACTTTAAAGAGGCCACAAATCTGGTCACTGAGATCCG ACGCATCGCCGACCGCGAGAATCACCATCCGATCCTATCCATCACCCGTC ACAAGCCAGAGGACGGTTCCATCTGGTGCGACAACGACATGCCTTCCGAC CTGAACGTTGAGTTGTCCTCGGCCGCTGTGCAGGACCTGACCCACTTCGA CATCACGCAAGCGCGCTCCTTGTCCGCCCTGGTCTGCGAGGCCCCGGGGG ACCGAAAATATCAAGGACGAGACTGA back to top
|