|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:1572653..1574910 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G05650.1 vs.
Match: EWM22780.1 (NMT1/THI5-like protein, partial [Nannochloropsis gaditana]) HSP 1 Score: 233.8 bits (595), Expect = 7.500e-58 Identity = 116/142 (81.69%), Postives = 134/142 (94.37%), Query Frame = 0
Query: 1 MPRPRVFFQGDYELLSSQFAGLVVAAKKGIFKAKGIDVILRGRVRPGSEADVVAAIQEAVGEKGGVALGCAEQNIVVPAQHGGAPVKVISAMYHKSPLGLGLLPSSRITSLKELAHRESRVGMLADSLTLAQRMMHQAAGST 143
MPRPRVFFQGDYELLSSQFAGLVVAAK G+F+++GID++LRG+VRPGSEADVVA IQEAVG++G +ALGCAEQNIVVPAQ GAPV+V+SAMYHKSPLGLGLLP+SRITSLKELA R+ RVGMLADSL+LAQR++HQA GS+
Sbjct: 12 MPRPRVFFQGDYELLSSQFAGLVVAAKSGLFQSRGIDLVLRGKVRPGSEADVVAGIQEAVGDRGNLALGCAEQNIVVPAQAHGAPVQVVSAMYHKSPLGLGLLPTSRITSLKELAQRQMRVGMLADSLSLAQRLLHQAVGSS 153
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G05650.1 ID=NO01G05650.1|Name=NO01G05650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1045bp ACAGTCAAACCCCCTCTGTTGCAGCCATGCCGCGGCCCCGGGTGTTCTTT CAGGGCGACTATGAGTTACTCTCTTCCCAGTTCGCCGGTCTCGTCGTCGC TGCCAAAAAGGGTATATTTAAGGCCAAAGGCATTGACGTGATCTTGCGCG GGAGGGTACGGCCGGGTTCGGAGGCCGATGTGGTGGCCGCCATCCAGGAA GCAGTGGGGGAGAAGGGCGGTGTGGCCTTGGGGTGTGCAGAGCAAAACAT TGTCGTGCCCGCCCAACACGGCGGCGCCCCCGTCAAAGTCATAAGTGCCA TGTACCACAAGAGTCCCCTAGGGCTCGGTCTTCTACCCTCCTCCAGAATC ACCAGCCTCAAAGAGCTCGCCCACCGGGAGTCGCGGGTAGGCATGCTGGC CGACTCTTTAACCCTAGCGCAACGAATGATGCACCAAGCCGCGGGCAGCA CGAGTGCCTACATCCCTGAGGTGGTGGAGGTGACCAACGAGAACAAAATC GGTCTTCTTTTAGCCGGAAAGCTGGACGCTATTCAGATCTACGACGCCAC CGAACCCGTAGAGATCCAGATCGAGACGGGACACCCCCCACGTTTCCTCC CCTTCCTCCCCTCCCTCGGCTACGCTCAAGCCATTTTCGCCCACTCCACG GCTCTGACGAACGAGAAACAGAGGGATGTGATAACGACGTTTCTAGCCTG CATGTATCAAGGCTGGGAGGAGGCTCTGAACGACCCCCGGGCCACGGCCG CCCTCATCATGGAGGCACGGAGGGAGGCCCACGTGGCGGTGACCAACCCC AAAATCGAGAAGACGGAATACTTCGAGAAGGTTCTACGCAACCTCGAGGC CTACGTCCGTCCTCCCGCAGGAAAGAGCAAGATGGGTCTTGTGGACCCCG GCGTGTACGACGAGGCGAGTGCGTTTTTCGTGAAGGCCGGCTTACTGTCC AAGGCCTTCCCACAGGCCAAGAGCCTGGACACCACTCTCTGGGCATGAGG GGAGGGAGGGAGGGAGGGGTGTGCAGGAAATTTGGGTGATGGGAG back to topprotein sequence of NO01G05650.1 >NO01G05650.1-protein ID=NO01G05650.1-protein|Name=NO01G05650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=324bp MPRPRVFFQGDYELLSSQFAGLVVAAKKGIFKAKGIDVILRGRVRPGSEA DVVAAIQEAVGEKGGVALGCAEQNIVVPAQHGGAPVKVISAMYHKSPLGL GLLPSSRITSLKELAHRESRVGMLADSLTLAQRMMHQAAGSTSAYIPEVV EVTNENKIGLLLAGKLDAIQIYDATEPVEIQIETGHPPRFLPFLPSLGYA QAIFAHSTALTNEKQRDVITTFLACMYQGWEEALNDPRATAALIMEARRE AHVAVTNPKIEKTEYFEKVLRNLEAYVRPPAGKSKMGLVDPGVYDEASAF FVKAGLLSKAFPQAKSLDTTLWA* back to topmRNA from alignment at chr1:1572653..1574910- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G05650.1 ID=NO01G05650.1|Name=NO01G05650.1|organism=Nannochloropsis oceanica|type=mRNA|length=2258bp|location=Sequence derived from alignment at chr1:1572653..1574910- (Nannochloropsis oceanica) ACAGTCAAACCCCCTCTGTTGCAGCCATGCCGCGGCCCCGGGTGTTCTTT
CAGGGCGACTATGAGTTACTCTCTTCCCAGGTAAAGGCGCTCAGACCTCC
CCTCCCCCTCCTCCGCCCCTCTCCTTCTCGATCTCTATTACTCACCCTCC
GTCTTACTTCTTCCTTGTATTCCCTCCACTCTCGTAGTTCGCCGGTCTCG
TCGTCGCTGCCAAAAAGGGTATATTTAAGGCCAAAGGCATTGACGTGATC
TTGCGCGGGAGGGTACGGCCGGGTTCGGAGGCCGATGTGGTGGCCGCCAT
CCAGGAAGCAGTGGGGGAGAAGGGCGGTGTGGCCTTGGGGTGTGCAGAGC
AGTGAGTTTTGGCAAGGAGGGGCTAACAGGAGTGAAGGAGGGAGGGAATT
GCTGAATAAGTCGGGGTTGCCGTCTTCTCCATCATATCCACCTACCCTCC
GTCCCATCCCTCCCTCCCTCCCTCACTCAGAAACATTGTCGTGCCCGCCC
AACACGGCGGCGCCCCCGTCAAAGTCATAAGTGCCATGTACCACAAGAGT
CCCCTAGGGCTCGGTCTTCTACCCTCCTCCAGAATCACCAGCCTCAAGTA
CGTCCTCTTACCCTCCCTCTTTCCCACCCTCCCTCCCCCTCCCTCCCTCA
AACGCTCCCTCCCTCTTTACATTATGTTACTTTCCTATTGCTCAGACATT
CCATCTTTTCCTTCGCCCTGTCATCCTCCCCCCCCTTCTGTAGAGAGCTC
GCCCACCGGGAGTCGCGGGTAGGCATGCTGGCCGACTCTTTAACCCTAGC
GCAACGAATGATGCACCAAGCCGCGGGCAGCACGAGGTAGGGGGGGAGGG
GGAGGGGGAGGAGGAACGGGTAGCCACGCGCGATTTCCCCGCCGAGAGTC
ATTTGTGCGATCCGTCGCGTATTTCATCCTCCCTCGCTCCCTTCCTCCCG
TCCTCCCTCCCGTCCTCCCTCCCGCCCTCCTTCAGTGCCTACATCCCTGA
GGTGGTGGAGGTGACCAACGAGAACAAAATCGGTCTTCTTTTAGCCGGAA
AGCTGGACGCTATTCAGGTAGGCCTCCCTCCCTCCCTCCCTCCCTCCCTT
ATGTCCTCAATCCCACTTCTCGTCGCAGAACCCCTCCAAACCTCATTCCC
CCTCCTTCCCGCCCTCCCTCCTTCCCTCCTTCCCGCCCTCCCTCCCTCCC
CTCCTCCCTCCCTTCCAGATCTACGACGCCACCGAACCCGTAGAGATCCA
GATCGAGACGGGACACCCCCCACGTTTCCTCCCCTTCCTCCCCTCCCTCG
GCTACGCTCAAGCCATTTTCGCCCACTCCACGGCTCTGACGAACGAGAAA
CAGAGGTAGGGAGGTAGGGAGGGAGGGAGGAGGTCGCAATAAGAACCGCA
CGCTCAATCCCATTCGCCTTATATATGCACTCTTTCATTTCACATGTGCC
CTCCCTCCCTCCCTCCCTCCCTCGTCCAGGGATGTGATAACGACGTTTCT
AGCCTGCATGTATCAAGGCTGGGAGGAGGCTCTGAACGACCCCCGGGCCA
CGGCCGCCCTCATCATGGAGGCACGGAGGGAGGTGAGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGAGTGGCTGAGTTTTGACTCATGAGGAG
GGTGGAGCACGGCGTTGTGAAGGGGGGGGGGGCAGGGAGGGAAGGGGGGA
GGGAGTCCTGATCCTTTGACGCCTGCTGGCATTATCTTTATTTCACACTC
GCCCCTCCCCTTCCCCCCCTCCTTTCCTCCCTCTCAAGGCCCACGTGGCG
GTGACCAACCCCAAAATCGAGAAGACGGAATACTTCGAGAAGGTTCTACG
CAACCTCGAGGCCTACGTCCGTCCTCCCGCAGGAAAGAGCAAGATGGGTA
GGTCCCCTCCCTCCCTCCCTCCCTCCCTCTCTTCCCCTTTCCTTCCTCTG
CCCCCTGTTCTAAAGAATAATGAGATAATGCGACCTCACATCATTTCGCG
CATTTCGGGTGGTCGAACTATCAATCAAACACCCCCACACCCCCGTTAAG
CCTTTACCTCTCACCCTCTCTCCCTCCCTCCCTCCCTCCCTCTCCCAGGT
CTTGTGGACCCCGGCGTGTACGACGAGGCGAGTGCGTTTTTCGTGAAGGC
CGGCTTACTGTCCAAGGCCTTCCCACAGGCCAAGAGCCTGGACACCACTC
TCTGGGCATGAGGGGAGGGAGGGAGGGAGGGGTGTGCAGGAAATTTGGGT
GATGGGAG back to topCoding sequence (CDS) from alignment at chr1:1572653..1574910- >NO01G05650.1 ID=NO01G05650.1|Name=NO01G05650.1|organism=Nannochloropsis oceanica|type=CDS|length=972bp|location=Sequence derived from alignment at chr1:1572653..1574910- (Nannochloropsis oceanica) ATGCCGCGGCCCCGGGTGTTCTTTCAGGGCGACTATGAGTTACTCTCTTC CCAGTTCGCCGGTCTCGTCGTCGCTGCCAAAAAGGGTATATTTAAGGCCA AAGGCATTGACGTGATCTTGCGCGGGAGGGTACGGCCGGGTTCGGAGGCC GATGTGGTGGCCGCCATCCAGGAAGCAGTGGGGGAGAAGGGCGGTGTGGC CTTGGGGTGTGCAGAGCAAAACATTGTCGTGCCCGCCCAACACGGCGGCG CCCCCGTCAAAGTCATAAGTGCCATGTACCACAAGAGTCCCCTAGGGCTC GGTCTTCTACCCTCCTCCAGAATCACCAGCCTCAAAGAGCTCGCCCACCG GGAGTCGCGGGTAGGCATGCTGGCCGACTCTTTAACCCTAGCGCAACGAA TGATGCACCAAGCCGCGGGCAGCACGAGTGCCTACATCCCTGAGGTGGTG GAGGTGACCAACGAGAACAAAATCGGTCTTCTTTTAGCCGGAAAGCTGGA CGCTATTCAGATCTACGACGCCACCGAACCCGTAGAGATCCAGATCGAGA CGGGACACCCCCCACGTTTCCTCCCCTTCCTCCCCTCCCTCGGCTACGCT CAAGCCATTTTCGCCCACTCCACGGCTCTGACGAACGAGAAACAGAGGGA TGTGATAACGACGTTTCTAGCCTGCATGTATCAAGGCTGGGAGGAGGCTC TGAACGACCCCCGGGCCACGGCCGCCCTCATCATGGAGGCACGGAGGGAG GCCCACGTGGCGGTGACCAACCCCAAAATCGAGAAGACGGAATACTTCGA GAAGGTTCTACGCAACCTCGAGGCCTACGTCCGTCCTCCCGCAGGAAAGA GCAAGATGGGTCTTGTGGACCCCGGCGTGTACGACGAGGCGAGTGCGTTT TTCGTGAAGGCCGGCTTACTGTCCAAGGCCTTCCCACAGGCCAAGAGCCT GGACACCACTCTCTGGGCATGA back to top
|