NO01G05650.1, NO01G05650.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05650.1
Unique NameNO01G05650.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1045
Alignment locationchr1:1572653..1574910 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1572653..1574910 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G05650.1 vs.
Match: EWM22780.1 (NMT1/THI5-like protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 233.8 bits (595), Expect = 7.500e-58
Identity = 116/142 (81.69%), Postives = 134/142 (94.37%), Query Frame = 0
Query:    1 MPRPRVFFQGDYELLSSQFAGLVVAAKKGIFKAKGIDVILRGRVRPGSEADVVAAIQEAVGEKGGVALGCAEQNIVVPAQHGGAPVKVISAMYHKSPLGLGLLPSSRITSLKELAHRESRVGMLADSLTLAQRMMHQAAGST 143
            MPRPRVFFQGDYELLSSQFAGLVVAAK G+F+++GID++LRG+VRPGSEADVVA IQEAVG++G +ALGCAEQNIVVPAQ  GAPV+V+SAMYHKSPLGLGLLP+SRITSLKELA R+ RVGMLADSL+LAQR++HQA GS+
Sbjct:   12 MPRPRVFFQGDYELLSSQFAGLVVAAKSGLFQSRGIDLVLRGKVRPGSEADVVAGIQEAVGDRGNLALGCAEQNIVVPAQAHGAPVQVVSAMYHKSPLGLGLLPTSRITSLKELAQRQMRVGMLADSLSLAQRLLHQAVGSS 153          
The following BLAST results are available for this feature:
BLAST of NO01G05650.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22780.17.500e-5881.69NMT1/THI5-like protein, partial [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05650NO01G05650Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05650.1NO01G05650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05650.1.cds1NO01G05650.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05650.1.cds2NO01G05650.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05650.1.cds3NO01G05650.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05650.1.cds4NO01G05650.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05650.1.cds5NO01G05650.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05650.1.cds6NO01G05650.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05650.1.cds7NO01G05650.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05650.1.cds8NO01G05650.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05650.1.cds9NO01G05650.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05650.1 ID=NO01G05650.1|Name=NO01G05650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1045bp
ACAGTCAAACCCCCTCTGTTGCAGCCATGCCGCGGCCCCGGGTGTTCTTT
CAGGGCGACTATGAGTTACTCTCTTCCCAGTTCGCCGGTCTCGTCGTCGC
TGCCAAAAAGGGTATATTTAAGGCCAAAGGCATTGACGTGATCTTGCGCG
GGAGGGTACGGCCGGGTTCGGAGGCCGATGTGGTGGCCGCCATCCAGGAA
GCAGTGGGGGAGAAGGGCGGTGTGGCCTTGGGGTGTGCAGAGCAAAACAT
TGTCGTGCCCGCCCAACACGGCGGCGCCCCCGTCAAAGTCATAAGTGCCA
TGTACCACAAGAGTCCCCTAGGGCTCGGTCTTCTACCCTCCTCCAGAATC
ACCAGCCTCAAAGAGCTCGCCCACCGGGAGTCGCGGGTAGGCATGCTGGC
CGACTCTTTAACCCTAGCGCAACGAATGATGCACCAAGCCGCGGGCAGCA
CGAGTGCCTACATCCCTGAGGTGGTGGAGGTGACCAACGAGAACAAAATC
GGTCTTCTTTTAGCCGGAAAGCTGGACGCTATTCAGATCTACGACGCCAC
CGAACCCGTAGAGATCCAGATCGAGACGGGACACCCCCCACGTTTCCTCC
CCTTCCTCCCCTCCCTCGGCTACGCTCAAGCCATTTTCGCCCACTCCACG
GCTCTGACGAACGAGAAACAGAGGGATGTGATAACGACGTTTCTAGCCTG
CATGTATCAAGGCTGGGAGGAGGCTCTGAACGACCCCCGGGCCACGGCCG
CCCTCATCATGGAGGCACGGAGGGAGGCCCACGTGGCGGTGACCAACCCC
AAAATCGAGAAGACGGAATACTTCGAGAAGGTTCTACGCAACCTCGAGGC
CTACGTCCGTCCTCCCGCAGGAAAGAGCAAGATGGGTCTTGTGGACCCCG
GCGTGTACGACGAGGCGAGTGCGTTTTTCGTGAAGGCCGGCTTACTGTCC
AAGGCCTTCCCACAGGCCAAGAGCCTGGACACCACTCTCTGGGCATGAGG
GGAGGGAGGGAGGGAGGGGTGTGCAGGAAATTTGGGTGATGGGAG
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protein sequence of NO01G05650.1

>NO01G05650.1-protein ID=NO01G05650.1-protein|Name=NO01G05650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=324bp
MPRPRVFFQGDYELLSSQFAGLVVAAKKGIFKAKGIDVILRGRVRPGSEA
DVVAAIQEAVGEKGGVALGCAEQNIVVPAQHGGAPVKVISAMYHKSPLGL
GLLPSSRITSLKELAHRESRVGMLADSLTLAQRMMHQAAGSTSAYIPEVV
EVTNENKIGLLLAGKLDAIQIYDATEPVEIQIETGHPPRFLPFLPSLGYA
QAIFAHSTALTNEKQRDVITTFLACMYQGWEEALNDPRATAALIMEARRE
AHVAVTNPKIEKTEYFEKVLRNLEAYVRPPAGKSKMGLVDPGVYDEASAF
FVKAGLLSKAFPQAKSLDTTLWA*
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mRNA from alignment at chr1:1572653..1574910-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05650.1 ID=NO01G05650.1|Name=NO01G05650.1|organism=Nannochloropsis oceanica|type=mRNA|length=2258bp|location=Sequence derived from alignment at chr1:1572653..1574910- (Nannochloropsis oceanica)
ACAGTCAAACCCCCTCTGTTGCAGCCATGCCGCGGCCCCGGGTGTTCTTT CAGGGCGACTATGAGTTACTCTCTTCCCAGGTAAAGGCGCTCAGACCTCC CCTCCCCCTCCTCCGCCCCTCTCCTTCTCGATCTCTATTACTCACCCTCC GTCTTACTTCTTCCTTGTATTCCCTCCACTCTCGTAGTTCGCCGGTCTCG TCGTCGCTGCCAAAAAGGGTATATTTAAGGCCAAAGGCATTGACGTGATC TTGCGCGGGAGGGTACGGCCGGGTTCGGAGGCCGATGTGGTGGCCGCCAT CCAGGAAGCAGTGGGGGAGAAGGGCGGTGTGGCCTTGGGGTGTGCAGAGC AGTGAGTTTTGGCAAGGAGGGGCTAACAGGAGTGAAGGAGGGAGGGAATT GCTGAATAAGTCGGGGTTGCCGTCTTCTCCATCATATCCACCTACCCTCC GTCCCATCCCTCCCTCCCTCCCTCACTCAGAAACATTGTCGTGCCCGCCC AACACGGCGGCGCCCCCGTCAAAGTCATAAGTGCCATGTACCACAAGAGT CCCCTAGGGCTCGGTCTTCTACCCTCCTCCAGAATCACCAGCCTCAAGTA CGTCCTCTTACCCTCCCTCTTTCCCACCCTCCCTCCCCCTCCCTCCCTCA AACGCTCCCTCCCTCTTTACATTATGTTACTTTCCTATTGCTCAGACATT CCATCTTTTCCTTCGCCCTGTCATCCTCCCCCCCCTTCTGTAGAGAGCTC GCCCACCGGGAGTCGCGGGTAGGCATGCTGGCCGACTCTTTAACCCTAGC GCAACGAATGATGCACCAAGCCGCGGGCAGCACGAGGTAGGGGGGGAGGG GGAGGGGGAGGAGGAACGGGTAGCCACGCGCGATTTCCCCGCCGAGAGTC ATTTGTGCGATCCGTCGCGTATTTCATCCTCCCTCGCTCCCTTCCTCCCG TCCTCCCTCCCGTCCTCCCTCCCGCCCTCCTTCAGTGCCTACATCCCTGA GGTGGTGGAGGTGACCAACGAGAACAAAATCGGTCTTCTTTTAGCCGGAA AGCTGGACGCTATTCAGGTAGGCCTCCCTCCCTCCCTCCCTCCCTCCCTT ATGTCCTCAATCCCACTTCTCGTCGCAGAACCCCTCCAAACCTCATTCCC CCTCCTTCCCGCCCTCCCTCCTTCCCTCCTTCCCGCCCTCCCTCCCTCCC CTCCTCCCTCCCTTCCAGATCTACGACGCCACCGAACCCGTAGAGATCCA GATCGAGACGGGACACCCCCCACGTTTCCTCCCCTTCCTCCCCTCCCTCG GCTACGCTCAAGCCATTTTCGCCCACTCCACGGCTCTGACGAACGAGAAA CAGAGGTAGGGAGGTAGGGAGGGAGGGAGGAGGTCGCAATAAGAACCGCA CGCTCAATCCCATTCGCCTTATATATGCACTCTTTCATTTCACATGTGCC CTCCCTCCCTCCCTCCCTCCCTCGTCCAGGGATGTGATAACGACGTTTCT AGCCTGCATGTATCAAGGCTGGGAGGAGGCTCTGAACGACCCCCGGGCCA CGGCCGCCCTCATCATGGAGGCACGGAGGGAGGTGAGGAGGGAGGGAGGG AGGGAGGGAGGGAGGGAGGGAGGAGTGGCTGAGTTTTGACTCATGAGGAG GGTGGAGCACGGCGTTGTGAAGGGGGGGGGGGCAGGGAGGGAAGGGGGGA GGGAGTCCTGATCCTTTGACGCCTGCTGGCATTATCTTTATTTCACACTC GCCCCTCCCCTTCCCCCCCTCCTTTCCTCCCTCTCAAGGCCCACGTGGCG GTGACCAACCCCAAAATCGAGAAGACGGAATACTTCGAGAAGGTTCTACG CAACCTCGAGGCCTACGTCCGTCCTCCCGCAGGAAAGAGCAAGATGGGTA GGTCCCCTCCCTCCCTCCCTCCCTCCCTCTCTTCCCCTTTCCTTCCTCTG CCCCCTGTTCTAAAGAATAATGAGATAATGCGACCTCACATCATTTCGCG CATTTCGGGTGGTCGAACTATCAATCAAACACCCCCACACCCCCGTTAAG CCTTTACCTCTCACCCTCTCTCCCTCCCTCCCTCCCTCCCTCTCCCAGGT CTTGTGGACCCCGGCGTGTACGACGAGGCGAGTGCGTTTTTCGTGAAGGC CGGCTTACTGTCCAAGGCCTTCCCACAGGCCAAGAGCCTGGACACCACTC TCTGGGCATGAGGGGAGGGAGGGAGGGAGGGGTGTGCAGGAAATTTGGGT GATGGGAG
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Coding sequence (CDS) from alignment at chr1:1572653..1574910-

>NO01G05650.1 ID=NO01G05650.1|Name=NO01G05650.1|organism=Nannochloropsis oceanica|type=CDS|length=972bp|location=Sequence derived from alignment at chr1:1572653..1574910- (Nannochloropsis oceanica)
ATGCCGCGGCCCCGGGTGTTCTTTCAGGGCGACTATGAGTTACTCTCTTC
CCAGTTCGCCGGTCTCGTCGTCGCTGCCAAAAAGGGTATATTTAAGGCCA
AAGGCATTGACGTGATCTTGCGCGGGAGGGTACGGCCGGGTTCGGAGGCC
GATGTGGTGGCCGCCATCCAGGAAGCAGTGGGGGAGAAGGGCGGTGTGGC
CTTGGGGTGTGCAGAGCAAAACATTGTCGTGCCCGCCCAACACGGCGGCG
CCCCCGTCAAAGTCATAAGTGCCATGTACCACAAGAGTCCCCTAGGGCTC
GGTCTTCTACCCTCCTCCAGAATCACCAGCCTCAAAGAGCTCGCCCACCG
GGAGTCGCGGGTAGGCATGCTGGCCGACTCTTTAACCCTAGCGCAACGAA
TGATGCACCAAGCCGCGGGCAGCACGAGTGCCTACATCCCTGAGGTGGTG
GAGGTGACCAACGAGAACAAAATCGGTCTTCTTTTAGCCGGAAAGCTGGA
CGCTATTCAGATCTACGACGCCACCGAACCCGTAGAGATCCAGATCGAGA
CGGGACACCCCCCACGTTTCCTCCCCTTCCTCCCCTCCCTCGGCTACGCT
CAAGCCATTTTCGCCCACTCCACGGCTCTGACGAACGAGAAACAGAGGGA
TGTGATAACGACGTTTCTAGCCTGCATGTATCAAGGCTGGGAGGAGGCTC
TGAACGACCCCCGGGCCACGGCCGCCCTCATCATGGAGGCACGGAGGGAG
GCCCACGTGGCGGTGACCAACCCCAAAATCGAGAAGACGGAATACTTCGA
GAAGGTTCTACGCAACCTCGAGGCCTACGTCCGTCCTCCCGCAGGAAAGA
GCAAGATGGGTCTTGTGGACCCCGGCGTGTACGACGAGGCGAGTGCGTTT
TTCGTGAAGGCCGGCTTACTGTCCAAGGCCTTCCCACAGGCCAAGAGCCT
GGACACCACTCTCTGGGCATGA
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Synonyms
Publications