NO01G05630.1, NO01G05630.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G05630.1
Unique Name	NO01G05630.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2453
Alignment location	chr1:1562736..1565428 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:1562736..1565428 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO01G05630.1 vs.
Match: EWM22776.1 (Ribonuclease Zc3h12a-like protein [Nannochloropsis gaditana])

HSP 1 Score: 224.2 bits (570), Expect = 1.100e-54
Identity = 111/161 (68.94%), Postives = 126/161 (78.26%), Query Frame = 0

Query:  406 MHDAPDTSSACQGRIPLNSRIDANRIAAAIEYFRQRNVGVAAFIPAYVLRRKGPASASAKGP--GSENVMMQTETQEVLQSLVDSRRLATVPPNDNDDLYILEFAREKNALVVSNDCFRDHCARDKSLRLFVAQNRLSYTFFNQDFLPNPGHAWIKQLNER 565
            MHDAP+ +    G  PLN+RIDA+RIA+AI YFR R++GVAAFIPAY LRRKGP    A G   G  NVMMQTE QE LQS+VD R LAT+PP DNDDLYILEFAREKNALV+SNDCFRDHCARD SLR F+ +NR+SYTFF  DFLPNPGH  ++ L  R
Sbjct:    1 MHDAPEDAVTTSGPAPLNARIDASRIASAISYFRGRSIGVAAFIPAYALRRKGPGGGRAGGREGGGGNVMMQTEAQESLQSMVDRRWLATIPPTDNDDLYILEFAREKNALVLSNDCFRDHCARDPSLRPFLQRNRVSYTFFANDFLPNPGHVGLQALKSR 161

The following BLAST results are available for this feature:

BLAST of NO01G05630.1 vs.

BLAST of NO01G05630.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM22776.1	1.100e-54	68.94	Ribonuclease Zc3h12a-like protein [Nannochloropsis...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO01G05630	NO01G05630	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO01G05630.1	NO01G05630.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO01G05630.1.cds1	NO01G05630.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05630.1.cds2	NO01G05630.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05630.1.cds3	NO01G05630.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:1562736..1565428-
coding sequence from alignment at chr1:1562736..1565428-

mRNA sequence

>NO01G05630.1 ID=NO01G05630.1|Name=NO01G05630.1|organism=Nannochloropsis oceanica|type=mRNA|length=2453bp
CATCGAAGTAGTCGTACTGCCTGTGTGGTGTGTGTGAAACAAAAGGCGCT
GTGTGAGCTTGTGTGTGGAAGTGGAGAGACATGTCCAAGCACGGAGATAC
GAGGTAGTCTCGGGTATCAACTGGGTTGCGCGAAGGCGTGCCCAGAGTTC
GAACGTCAAGGCCTTGGGCCAAGCGCGAACAGCGTGCATGCACACATGCA
TCAATTTTTCCACAAAACACATATCAAACAACAGGGGCGAGGCCCTCCAG
AGCCAGTGAGGCAGCCAGGTGCAAGGGCAGGGGCCAGTTTGGGTAAGCGT
GGAGATTGATGCCTGTCTCGTCCCCTGGCGGAAGAAGTCCTGCCACTCCT
ACAACAAATTCCTCTTCCTCCTCATTCTCCGCCCACGCCACCGGTGCCAG
CACCACAGCAAGCAACATGGCTGTGGAGGCCCCCCGGACTCTGTATAAGA
CCTCGCTGGGGAATATCGTGCATGCGGTGGAAGGAGAGGAGACGGGTGGT
GGCGATGGAGGGGCGAACCAAACCACCAACTCCACAAGCTCAACGCATGT
CAGACGCCGGAAAGGCCATTTAATCACGGAGGAAGACGTGCATGGGAACG
TGGTGCGCGTGAGTCGGGCTCCGGTTACCAAGAAGCGGATGCGGTTTCAG
GCGGGGTCAGGGGATGTGCGGATGGCGACGGACTCGAAGAGGGAGGAGGA
GGGGGAGGGAGAGGATGAGCGGAGGATAGCGAGTCACGGGCACGACCTGC
CGCCGGCTTCTTTTATCTTCCCTCCACATAACTCGCAGCAGCAGTACCAC
TATGGGCAGCGGCAGGATGAGGAGCATCACCGACATCAACACTACCAGCA
GCAGCCGCAGCACAACCACCACCTCCTGATGCAGCAGCAACAGCAACAGC
AGTGCGAGGATCAGCAGCGACTTCAGTATTCACGGTACCAGCAACATCAC
TTGGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACA
GCAACAACAACAACCACATGGACAACAGCTTTACCACCAACAACAACAAC
AACACCACCAGCAGCAGCAGCAGCACTGCCAGCAAGAGGTAGAAGATGAA
GGGAACACTGAGATGGAAATCGATGCATCTGCCTCTGCTGCACCTCCACT
TCCATCTCCTCCTCGAGCAGTCTTGTCGGCGCATCGAACCCTACCTCCTC
CTCCAGGTGACGCAAAGTCGTCGTCATCATCCTCCTCTTCCTCCCCCTCC
TCTTCATGTTCGGGTTTTTTGTTCTCGTCTTCTTCAAGCCATCCCCCCGA
TACGATGTCCCACCAATTAAAAGCACGAGCACAAACAGCAGCAGGAGAAG
CACCGGAAGCTGCAAAACCCGTCACAGTCTTCTCTACCTCCGTCCCTGCC
CAGATAGCCACGAATCCAGTAGCGGCCTGTCATGCATCTCTCCCCCCTCC
CTCTATCAACGCCCCACCCTCCCCTGACAGGTCTATTCGCATCAAGGTTG
TGATCGACGCAGCCAATGTGGGCATGCATGACGCCCCCGATACCTCCAGC
GCGTGCCAGGGCCGAATCCCCCTCAATTCCCGCATCGACGCCAACCGAAT
CGCGGCCGCCATCGAGTATTTCCGCCAGCGCAACGTGGGTGTCGCGGCCT
TTATTCCCGCCTATGTACTGCGTCGGAAGGGCCCGGCGTCGGCCTCAGCG
AAGGGGCCTGGGAGCGAGAATGTCATGATGCAGACGGAGACGCAGGAGGT
TCTTCAGTCTCTGGTGGACAGTCGCAGACTCGCAACCGTGCCACCCAACG
ACAACGACGACCTATACATTCTAGAATTTGCCCGAGAGAAGAACGCCCTA
GTGGTGTCGAACGACTGTTTCCGCGATCACTGTGCCCGCGATAAGTCCCT
CCGCCTTTTCGTCGCGCAGAACCGCCTGTCCTATACTTTCTTCAACCAGG
ACTTTTTGCCCAACCCCGGCCACGCGTGGATCAAGCAGTTGAATGAGAGG
GTGAGGGCGAAGGAGGGGCCTTGAGTGGGATGAGCTGGAGGAGGAGGGAG
ACGAAGGGAGGTGGAAGGAGACAAGGCAGGAAGTGTGTGTTCACGCAGTC
ATTCGTGCGCATGTATATTCAATAGAAAAAATTAGGGAAGGATCGTGTAC
AAACTAACTCCAAAAGTAACCAGAGAATGACGCAGATGACGAGAAATTAT
GTTTCCAGCTTGCTCCCACTCTTTCTCTCCTTTTCATCGTTTTACTCTGA
GCAACTGTTTGGTTGGGCGTACACACAAGTAACTCATGAATGATGGTGGG
TAAATAACTGAATAGCTTGTTGCTCTAATCTGGGTCTCCGTGTACAGTCA
CTGAATCCTTGTGATTCCATCGCGACGCACTGGGCCTCCACGGTATATAC
GTCCAGACTTTCCCCTGCGACATAGAGGCGTCGCGGCCGGCATCTCTTCC
CTG

protein sequence of NO01G05630.1

>NO01G05630.1-protein ID=NO01G05630.1-protein|Name=NO01G05630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=572bp
MPVSSPGGRSPATPTTNSSSSSFSAHATGASTTASNMAVEAPRTLYKTSL
GNIVHAVEGEETGGGDGGANQTTNSTSSTHVRRRKGHLITEEDVHGNVVR
VSRAPVTKKRMRFQAGSGDVRMATDSKREEEGEGEDERRIASHGHDLPPA
SFIFPPHNSQQQYHYGQRQDEEHHRHQHYQQQPQHNHHLLMQQQQQQQCE
DQQRLQYSRYQQHHLEQQQQQQQQQQQQQQQQQQQPHGQQLYHQQQQQHH
QQQQQHCQQEVEDEGNTEMEIDASASAAPPLPSPPRAVLSAHRTLPPPPG
DAKSSSSSSSSSPSSSCSGFLFSSSSSHPPDTMSHQLKARAQTAAGEAPE
AAKPVTVFSTSVPAQIATNPVAACHASLPPPSINAPPSPDRSIRIKVVID
AANVGMHDAPDTSSACQGRIPLNSRIDANRIAAAIEYFRQRNVGVAAFIP
AYVLRRKGPASASAKGPGSENVMMQTETQEVLQSLVDSRRLATVPPNDND
DLYILEFAREKNALVVSNDCFRDHCARDKSLRLFVAQNRLSYTFFNQDFL
PNPGHAWIKQLNERVRAKEGP*

mRNA from alignment at chr1:1562736..1565428-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO01G05630.1 ID=NO01G05630.1|Name=NO01G05630.1|organism=Nannochloropsis oceanica|type=mRNA|length=2693bp|location=Sequence derived from alignment at chr1:1562736..1565428- (Nannochloropsis oceanica)
CATCGAAGTAGTCGTACTGCCTGTGTGGTGTGTGTGAAACAAAAGGCGCT
GTGTGAGCTTGTGTGTGGAAGTGGAGAGACATGTCCAAGCACGGAGATAC
GAGGTAGTCTCGGGTATCAACTGGGTTGCGCGAAGGCGTGCCCAGAGTTC
GAACGTCAAGGCCTTGGGCCAAGCGCGAACAGCGTGCATGCACACATGCA
TCAATTTTTCCACAAAACACATATCAAACAACAGGGGCGAGGCCCTCCAG
AGCCAGTGAGGCAGCCAGGTGCAAGGGCAGGGGCCAGTTTGGGTAAGCGT
GGAGATTGATGCCTGTCTCGTCCCCTGGCGGAAGAAGTCCTGCCACTCCT
ACAACAAATTCCTCTTCCTCCTCATTCTCCGCCCACGCCACCGGTGCCAG
CACCACAGCAAGCAACATGGCTGTGGAGGCCCCCCGGACTCTGTATAAGA
CCTCGCTGGGGAATATCGTGCATGCGGTGGAAGGAGAGGAGACGGGTGGT
GGCGATGGAGGGGCGAACCAAACCACCAACTCCACAAGCTCAACGCATGT
CAGACGCCGGAAAGGCCATTTAATCACGGAGGAAGACGTGCATGGGAACG
TGGTGCGCGTGAGTCGGGCTCCGGTTACCAAGAAGCGGATGCGGTTTCAG
GCGGGGTCAGGGGATGTGCGGATGGCGACGGACTCGAAGAGGGAGGAGGA
GGGGGAGGGAGAGGATGAGCGGAGGATAGCGAGTCACGGGCACGACCTGC
CGCCGGCTTCTTTTATCTTCCCTCCACATAACTCGCAGCAGCAGTACCAC
TATGGGCAGCGGCAGGATGAGGAGCATCACCGACATCAACACTACCAGCA
GCAGCCGCAGCACAACCACCACCTCCTGATGCAGCAGCAACAGCAACAGC
AGTGCGAGGATCAGCAGCGACTTCAGTATTCACGGTACCAGCAACATCAC
TTGGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACA
GCAACAACAACAACCACATGGACAACAGCTTTACCACCAACAACAACAAC
AACACCACCAGCAGCAGCAGCAGCACTGCCAGCAAGAGGTAGAAGATGAA
GGGAACACTGAGATGGAAATCGATGCATCTGCCTCTGCTGCACCTCCACT
TCCATCTCCTCCTCGAGCAGTCTTGTCGGCGCATCGAACCCTACCTCCTC
CTCCAGGTGACGCAAAGTCGTCGTCATCATCCTCCTCTTCCTCCCCCTCC
TCTTCATGTTCGGGTTTTTTGTTCTCGTCTTCTTCAAGCCATCCCCCCGA
TACGATGTCCCACCAATTAAAAGCACGAGCACAAACAGCAGCAGGAGAAG
CACCGGAAGCTGCAAAACCCGTCACAGTCTTCTCTACCTCCGTCCCTGCC
CAGATAGCCACGAATCCAGTAGCGGCCTGTCATGCATCTCTCCCCCCTCC
CTCTATCAACGCCCCACCCTCCCCTGACAGGTCTATTCGCATCAAGGTAG
GTTCTTGAGGTGCTCTCTTCCCAGATTTATCACACACACACACACATACA
CACTTTCCCTCTTCTTCATTTCTCCTTTTCTCAACCGCCCGCCCACCCTC
TCTATCTCCCTCCTTCCCCCCGTCCCTCTTCACTCAGGTTGTGATCGACG
CAGCCAATGTGGGCATGCATGACGCCCCCGATACCTCCAGCGCGTGCCAG
GGCCGAATCCCCCTCAATTCCCGCATCGACGCCAACCGAATCGCGGCCGC
CATCGAGTATTTCCGCCAGCGCAACGTGGGTGTCGCGGCCTTTATTCCCG
CCTATGTACTGCGTCGGAAGGGCCCGGCGTCGGCCTCAGCGAAGGGGCCT
GGGAGCGAGAATGTCATGATGCAGACGGAGACGCAGGAGGTTCTTCAGTC
TCTGGTGGACAGTCGCAGACTCGCAACCGTGCCACCCAACGACAACGACG
ACCTATACATTCTAGAATTTGCCCGAGAGAAGGTACGGATTGGATCGAGG
CCACGCGAAGTGAATTATGGACTTGCTTGCGTCTTCTACTAACACCTGCT
TCCCCCTCCTTCCTCCCCCCCCCCTCCCAAGAACGCCCTAGTGGTGTCGA
ACGACTGTTTCCGCGATCACTGTGCCCGCGATAAGTCCCTCCGCCTTTTC
GTCGCGCAGAACCGCCTGTCCTATACTTTCTTCAACCAGGACTTTTTGCC
CAACCCCGGCCACGCGTGGATCAAGCAGTTGAATGAGAGGGTGAGGGCGA
AGGAGGGGCCTTGAGTGGGATGAGCTGGAGGAGGAGGGAGACGAAGGGAG
GTGGAAGGAGACAAGGCAGGAAGTGTGTGTTCACGCAGTCATTCGTGCGC
ATGTATATTCAATAGAAAAAATTAGGGAAGGATCGTGTACAAACTAACTC
CAAAAGTAACCAGAGAATGACGCAGATGACGAGAAATTATGTTTCCAGCT
TGCTCCCACTCTTTCTCTCCTTTTCATCGTTTTACTCTGAGCAACTGTTT
GGTTGGGCGTACACACAAGTAACTCATGAATGATGGTGGGTAAATAACTG
AATAGCTTGTTGCTCTAATCTGGGTCTCCGTGTACAGTCACTGAATCCTT
GTGATTCCATCGCGACGCACTGGGCCTCCACGGTATATACGTCCAGACTT
TCCCCTGCGACATAGAGGCGTCGCGGCCGGCATCTCTTCCCTG

Coding sequence (CDS) from alignment at chr1:1562736..1565428-

>NO01G05630.1 ID=NO01G05630.1|Name=NO01G05630.1|organism=Nannochloropsis oceanica|type=CDS|length=1716bp|location=Sequence derived from alignment at chr1:1562736..1565428- (Nannochloropsis oceanica)
ATGCCTGTCTCGTCCCCTGGCGGAAGAAGTCCTGCCACTCCTACAACAAA
TTCCTCTTCCTCCTCATTCTCCGCCCACGCCACCGGTGCCAGCACCACAG
CAAGCAACATGGCTGTGGAGGCCCCCCGGACTCTGTATAAGACCTCGCTG
GGGAATATCGTGCATGCGGTGGAAGGAGAGGAGACGGGTGGTGGCGATGG
AGGGGCGAACCAAACCACCAACTCCACAAGCTCAACGCATGTCAGACGCC
GGAAAGGCCATTTAATCACGGAGGAAGACGTGCATGGGAACGTGGTGCGC
GTGAGTCGGGCTCCGGTTACCAAGAAGCGGATGCGGTTTCAGGCGGGGTC
AGGGGATGTGCGGATGGCGACGGACTCGAAGAGGGAGGAGGAGGGGGAGG
GAGAGGATGAGCGGAGGATAGCGAGTCACGGGCACGACCTGCCGCCGGCT
TCTTTTATCTTCCCTCCACATAACTCGCAGCAGCAGTACCACTATGGGCA
GCGGCAGGATGAGGAGCATCACCGACATCAACACTACCAGCAGCAGCCGC
AGCACAACCACCACCTCCTGATGCAGCAGCAACAGCAACAGCAGTGCGAG
GATCAGCAGCGACTTCAGTATTCACGGTACCAGCAACATCACTTGGAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAAC
AACAACCACATGGACAACAGCTTTACCACCAACAACAACAACAACACCAC
CAGCAGCAGCAGCAGCACTGCCAGCAAGAGGTAGAAGATGAAGGGAACAC
TGAGATGGAAATCGATGCATCTGCCTCTGCTGCACCTCCACTTCCATCTC
CTCCTCGAGCAGTCTTGTCGGCGCATCGAACCCTACCTCCTCCTCCAGGT
GACGCAAAGTCGTCGTCATCATCCTCCTCTTCCTCCCCCTCCTCTTCATG
TTCGGGTTTTTTGTTCTCGTCTTCTTCAAGCCATCCCCCCGATACGATGT
CCCACCAATTAAAAGCACGAGCACAAACAGCAGCAGGAGAAGCACCGGAA
GCTGCAAAACCCGTCACAGTCTTCTCTACCTCCGTCCCTGCCCAGATAGC
CACGAATCCAGTAGCGGCCTGTCATGCATCTCTCCCCCCTCCCTCTATCA
ACGCCCCACCCTCCCCTGACAGGTCTATTCGCATCAAGGTTGTGATCGAC
GCAGCCAATGTGGGCATGCATGACGCCCCCGATACCTCCAGCGCGTGCCA
GGGCCGAATCCCCCTCAATTCCCGCATCGACGCCAACCGAATCGCGGCCG
CCATCGAGTATTTCCGCCAGCGCAACGTGGGTGTCGCGGCCTTTATTCCC
GCCTATGTACTGCGTCGGAAGGGCCCGGCGTCGGCCTCAGCGAAGGGGCC
TGGGAGCGAGAATGTCATGATGCAGACGGAGACGCAGGAGGTTCTTCAGT
CTCTGGTGGACAGTCGCAGACTCGCAACCGTGCCACCCAACGACAACGAC
GACCTATACATTCTAGAATTTGCCCGAGAGAAGAACGCCCTAGTGGTGTC
GAACGACTGTTTCCGCGATCACTGTGCCCGCGATAAGTCCCTCCGCCTTT
TCGTCGCGCAGAACCGCCTGTCCTATACTTTCTTCAACCAGGACTTTTTG
CCCAACCCCGGCCACGCGTGGATCAAGCAGTTGAATGAGAGGGTGAGGGC
GAAGGAGGGGCCTTGA

Synonyms

Publications