NO01G05610.1, NO01G05610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05610.1
Unique NameNO01G05610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length387
Alignment locationchr1:1558793..1559531 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1558793..1559531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G05610.1 vs.
Match: XP_005854694.1 (protein nef1 [Nannochloropsis gaditana CCMP526]; EKU21668.1 protein nef1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 119.4 bits (298), Expect = 5.100e-24
Identity = 60/79 (75.95%), Postives = 70/79 (88.61%), Query Frame = 0
Query:    1 MTTEAAYYSPVDPALFGILSLILIGSGLSFMAMFFVYEMKVSHEHSSRSIITELSMATLSSTLLGFGTLFLTLWAGVFI 80
            M+++  YYSPV+PA FG L+LILIGSGLSFMA+FFVYEMKVSH+H SRS++ EL MATLSS LLG GTLFLTLWAGVF+
Sbjct:    1 MSSQTPYYSPVNPAAFGTLALILIGSGLSFMALFFVYEMKVSHDHKSRSLVKELFMATLSSLLLGCGTLFLTLWAGVFV 79          
The following BLAST results are available for this feature:
BLAST of NO01G05610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854694.15.100e-2475.95protein nef1 [Nannochloropsis gaditana CCMP526]; E... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05610NO01G05610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05610.1NO01G05610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05610.1.cds1NO01G05610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05610.1.cds2NO01G05610.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05610.1.cds3NO01G05610.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05610.1 ID=NO01G05610.1|Name=NO01G05610.1|organism=Nannochloropsis oceanica|type=mRNA|length=387bp
ACAGGGACACCGAAGCAAAGCCACTGCACTCCACCTCTCCGCACCACCAC
CATGACTACGGAGGCCGCTTACTACAGCCCCGTGGACCCCGCTTTGTTCG
GCATCCTGTCCCTCATCTTGATTGGCTCGGGGCTTTCGTTCATGGCAATG
TTCTTCGTGTACGAGATGAAGGTCTCGCACGAGCACTCCTCCCGATCCAT
CATCACTGAGTTGTCCATGGCCACTCTTTCGTCCACTCTCCTCGGATTTG
GCACCCTTTTTCTCACATTGTGGGCAGGAGTATTCATTTAAACCGAATTG
GTCGGAGGGAAGAGCCGTGTGGATGTACTGATTTCAAGAGAGAAAGAAAG
AACTTCAAAAAAGTGATGCGATGAGGTGGGATGTTCA
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protein sequence of NO01G05610.1

>NO01G05610.1-protein ID=NO01G05610.1-protein|Name=NO01G05610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=80bp
MTTEAAYYSPVDPALFGILSLILIGSGLSFMAMFFVYEMKVSHEHSSRSI
ITELSMATLSSTLLGFGTLFLTLWAGVFI*
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mRNA from alignment at chr1:1558793..1559531+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05610.1 ID=NO01G05610.1|Name=NO01G05610.1|organism=Nannochloropsis oceanica|type=mRNA|length=739bp|location=Sequence derived from alignment at chr1:1558793..1559531+ (Nannochloropsis oceanica)
ACAGGGACACCGAAGCAAAGCCACTGCACTCCACCTCTCCGCACCACCAC CATGACTACGGAGGTACGCAACGCCACAAGCCCCTGTTTTCTTGTATCAA TGCTTCATTCCATGCACGTTGTGCGCAGGCACATTTCCTCCTCACACTGA CGCCCTCCCTTCCCACCCCACCCTCCCTTCCTTCCAACCCTATGATCGCT GCGTTGATCAGGCCGCTTACTACAGCCCCGTGGACCCCGCTTTGTTCGGC ATCCTGTCCCTCATCTTGATTGGCTCGGGGCTTTCGTTCATGGCAATGTT CTTCGTGTACGAGATGAAGGTAAGTGGAGATACCAGAGAGGGGGGACAGG GTGTCTTTTGGGAAGGGGGAGGAAGGGCAAGAGGGGGGAAGAAGGAATAG CTGCGTGGTTTGTGCCCTAGGTGGTACCCGAGCGCTGTACTTGTTCTGTC ATTATGCAAATTGTGGCAAGTATGACCTTGCTGATCGCACTCACCCACAC CGCTTGCCCCCTCCCTTCCCTAGGTCTCGCACGAGCACTCCTCCCGATCC ATCATCACTGAGTTGTCCATGGCCACTCTTTCGTCCACTCTCCTCGGATT TGGCACCCTTTTTCTCACATTGTGGGCAGGAGTATTCATTTAAACCGAAT TGGTCGGAGGGAAGAGCCGTGTGGATGTACTGATTTCAAGAGAGAAAGAA AGAACTTCAAAAAAGTGATGCGATGAGGTGGGATGTTCA
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Coding sequence (CDS) from alignment at chr1:1558793..1559531+

>NO01G05610.1 ID=NO01G05610.1|Name=NO01G05610.1|organism=Nannochloropsis oceanica|type=CDS|length=240bp|location=Sequence derived from alignment at chr1:1558793..1559531+ (Nannochloropsis oceanica)
ATGACTACGGAGGCCGCTTACTACAGCCCCGTGGACCCCGCTTTGTTCGG
CATCCTGTCCCTCATCTTGATTGGCTCGGGGCTTTCGTTCATGGCAATGT
TCTTCGTGTACGAGATGAAGGTCTCGCACGAGCACTCCTCCCGATCCATC
ATCACTGAGTTGTCCATGGCCACTCTTTCGTCCACTCTCCTCGGATTTGG
CACCCTTTTTCTCACATTGTGGGCAGGAGTATTCATTTAA
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Synonyms
Publications