NO01G05560.1, NO01G05560.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G05560.1
Unique Name	NO01G05560.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	4471
Alignment location	chr1:1532886..1540432 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:1532886..1540432 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO01G05560.1 vs.
Match: EWM22774.1 (p-type atpase [Nannochloropsis gaditana])

HSP 1 Score: 1183.7 bits (3061), Expect = 0.000e+0
Identity = 620/788 (78.68%), Postives = 673/788 (85.41%), Query Frame = 0

Query:  430 MGNATAICSDKTGTLTENRMAVTKCYMADLGALDCPPPSLPPGLTRLLAQGIALNTTANLDKGLRHTDEDEGEGEGEDELKDEKEDEKEAG-DKGKNGR-SLSSSSSALPPSPKKRL-----------IQVLGNKTEGALLLMADKYGVDYDKIREQHRGSIQYNPFSSKRKKMSVLVPEG-GDKKHRMLYVKGAAEMVLASCTHICRALDGESVPIDAAKRKELESYITTLAKQSLRTISLAHRKIEAPASSNARSS----GGGGNLDLDELEEKLTLDAIVGITDPLRPEVTDAVRACQKAGIMVRMVTGDNVETAKAIARQSGILTSYGTVLEGPAFRALTPRQLDALLPSLQVLARSSPDDKHTLVARLNGTLPETQAEWEEAHPGRSWETERDKLLPGYLAEWAASRGGVGEVVGVTGDGTNDAPALRVADVGLSMGLSGTEVAKEASDIVIMDDNFASIVKAVLWGRSVFDNIRKFLQFQLTVNVVALTITFLSAVSGYDPPLNAVMMLWVNLIMDTMGALALGTEAPAPELLVRRPYKRNASLISRPMWRNILVQSAYQIAILVLLLLRANEVLAFEGWWVHQPGATPPAPIEMGSTRHMTLIFNAFVFCQIFNEFNARSLADDVNIFRGLEKNPVFVCVIFFTVVVQWLVVQYGGDFTKTEPLSAEEWRATVLLGLCAIPLGVAMRFLPVTEDPENFGGTAESGFENVEPAVDNKNLPAHALPPYLVHHHGARRRV-LWRWVGVLLQLAALFVVPVLVGICMKNPERCQSLG-WLDFYKF 1198
            MGNATAICSDKTGTLTENRM VT CY+ DLG  +  PPSLPP L RLL  GI+LNTTANLDKG +                D +ED +E G   G+NG  SL SSSS LP     RL           +++LGNKTEGALLL  D Y VDYDK+RE +RGSIQYNPFSSKRKKMSVLVPEG G  K R+LYVKGAAE++LASCTHIC A DG+S P+DA KRKELE YITTLAKQSLRT+SLAHR I+  + S  +++    GGGG +DLDELEE LTLDAIVGITDPLRPEV++AVRACQKAGIMVRMVTGDNVETAKAIARQ GILTS GTV+EGPAFRALTP+QLD +LPSLQVLARSSPDDKHTLVARLNGTLPE QAEWE+AHPG+SWE ERD LLPGYL EWA SRGGVGEVVGVTGDGTNDAPALRVADVGLSMGLSGTEVAKEASDIVIMDDNFASIVKAVLWGR VFDNIRKFLQFQLTVNVVALTITFLSAVSGYDPPLNAVMMLWVNLIMDTMGALALGTEAP P LLVRRPYKRNASLISR MWRNILVQS YQI +LVLLLLRAN+VLAFEGWWVH+PGA+ PAPIEMGSTRHMTLIFNAFVFCQIFNEFNARSL DDVNI RGLEKNPVF+ +IFFTVVVQW+VVQ+GG+FTKT PLSAEEWRATVLLG+CAIPLGVAMR+LPV+E+P++FGGTAESGFENVEP+ D K   A A   Y VHHHGARRR  +WRW+GVL QL+ L VVPVLVGIC+K+PERCQSLG +LDFYKF
Sbjct:    1 MGNATAICSDKTGTLTENRMTVTHCYLGDLGPQNRLPPSLPPALLRLLGDGISLNTTANLDKGSQ----------------DGREDAEEGGVGVGQNGLPSLGSSSSRLPSFLPSRLPSLLSSLSKPPVKILGNKTEGALLLFVDAYNVDYDKVRENYRGSIQYNPFSSKRKKMSVLVPEGEGGGKQRVLYVKGAAELILASCTHICGAEDGKSKPLDAEKRKELEEYITTLAKQSLRTMSLAHRSIDPASLSKGKAAGFGEGGGGGVDLDELEEGLTLDAIVGITDPLRPEVSEAVRACQKAGIMVRMVTGDNVETAKAIARQCGILTSCGTVMEGPAFRALTPKQLDVVLPSLQVLARSSPDDKHTLVARLNGTLPEDQAEWEKAHPGKSWERERDGLLPGYLEEWAVSRGGVGEVVGVTGDGTNDAPALRVADVGLSMGLSGTEVAKEASDIVIMDDNFASIVKAVLWGRGVFDNIRKFLQFQLTVNVVALTITFLSAVSGYDPPLNAVMMLWVNLIMDTMGALALGTEAPTPNLLVRRPYKRNASLISRTMWRNILVQSGYQIIVLVLLLLRANDVLAFEGWWVHRPGASLPAPIEMGSTRHMTLIFNAFVFCQIFNEFNARSLGDDVNILRGLEKNPVFIGIIFFTVVVQWVVVQFGGEFTKTAPLSAEEWRATVLLGMCAIPLGVAMRYLPVSENPDDFGGTAESGFENVEPSGDAKQALAQAPALYHVHHHGARRRAQVWRWLGVLFQLSVLLVVPVLVGICVKDPERCQSLGNFLDFYKF 772

The following BLAST results are available for this feature:

BLAST of NO01G05560.1 vs.

BLAST of NO01G05560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM22774.1	0.000e+0	78.68	p-type atpase [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO01G05560	NO01G05560	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO01G05560.1	NO01G05560.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO01G05560.1.cds1	NO01G05560.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05560.1.cds2	NO01G05560.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05560.1.cds3	NO01G05560.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05560.1.cds4	NO01G05560.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05560.1.cds5	NO01G05560.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05560.1.cds6	NO01G05560.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05560.1.cds7	NO01G05560.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05560.1.cds8	NO01G05560.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05560.1.cds9	NO01G05560.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05560.1.cds10	NO01G05560.1.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05560.1.cds11	NO01G05560.1.cds11	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05560.1.cds12	NO01G05560.1.cds12	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05560.1.cds13	NO01G05560.1.cds13	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05560.1.cds14	NO01G05560.1.cds14	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05560.1.cds15	NO01G05560.1.cds15	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05560.1.cds16	NO01G05560.1.cds16	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05560.1.cds17	NO01G05560.1.cds17	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05560.1.cds18	NO01G05560.1.cds18	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:1532886..1540432+
coding sequence from alignment at chr1:1532886..1540432+

mRNA sequence

>NO01G05560.1 ID=NO01G05560.1|Name=NO01G05560.1|organism=Nannochloropsis oceanica|type=mRNA|length=4471bp
CCTCCCCTTCTTCATGTCTTTCCTCCACCTGACATCGCGAGACCATCGAA
AAAAGGTAGATTCAATTTGGACCTTGCAGGCATTGATAAGGACACCCATA
GGCGAGGTAAAAGTCCTTCCCCAACCCTGCTTGGAAGTGATCTAGTAGGG
GTGTACGCTGTGGCTGGGAATCTCGGAGGCTGGGTGATTGAGGCTTTGAA
TGGAAATTCGATGTGTAAAAGCCATTGACAGGCATAATACCCAAATACTT
GATGCCTCGCCCTGTTTATTAAAAAAAACTGCGCTATTATTTTTGAGTCG
ACAAGACGCAGGTTTACGAAAAGTAAAGTCACCACGCACGCGCGCACGCG
CTCGCCGCTTCCGACTTCCAATTTGCGGCGAAGGGGTGATCTTGCCATTA
CTCGTTGTTGCCCTTGCCGTACATCCACATGACTGGCGTGTCGACCATAG
AACAGCATGAAAATGTGCTTTTACAGTGTGGAAGTGCAGCTGCCGCATAT
TATGCCTGCCTTGCGTCGGGAGGGTTCAAGGAGTGCCATGGCATTTGATT
CGTCCACACGCTTTCTCGAATATTATGATGGGTCCCGGGCAGCGCACACT
GTACTGCATTCGAATTCAACAAGCCTTTTCAAGCTTTTTCTTATCCAAGC
CAACTGCTCCCATTCATCAATTCACACATCACAGCACCAGAGCATGGAAC
CCTTCAAGATCGGGCTCCGTGAGCTTGCGGAGCTGAATGAGGATCAACAA
ACGTTCCAGAATGTTTCACGTCTACGGGCGGGAGGGGGCGTCTCATGGTT
GCTCAAGGCCCTGCTTACGGACCGCGACAAGGGCATTGCCACGCGTGAGG
TGGCACGTCGCAAGGAAGCCTTTGGATCGAACCGCCTTCCCGAGCAGGAG
GCTGAATCATGGCTAAGCATCTTCATGGGGAGCTTCAACGATGCCACCTT
GATCGTGCTGATCGTTTCGGCCGTGGTCTCGCTCGCGATCGGCCTATACG
AGGACCCGAAAAAGGGTTGGGTTGAGGGCGTGGCCATCCTGACCGCTGTC
CTGGCAGTTGCCACCGTTACGGCCAGTAACGACTATTCCAAGGAACAGCA
ATTCCGGGCCCTTAATGCCGTCAAGGAGGATATTCTTATTAAGGTCCGGC
GCGATGGATACGTAAAGGCAGTTTCGGTGCATGATGTTGTGGTAGGCGAC
ATCGTTATCGTGGAGGCGGGGGACAAGGTGGCAGCGGACGGCGTGCTGCT
GGAGTACTACGATGTAACGGCCAACGAGAGTTCGTTAACGGGCGAGGCGG
AGGAGATCACCAAGAACGAGGACGATCCATTCCTCCTCTCGGGTTGCCAA
GTAACGAACGGTAACGGGCAGATGCTGGCGCTGGCCGTTGGGAAGGAGAG
CCGGTGGGGTCGAATCCGCGAAAAGCTCGAAGCGGAGACCAAGGACACCC
CCTTGCAGGAAAAACTGGACGACATGGCCAACTTCATCGGGTATATGGGC
ATGGGCGCGGCCCTCCTGACCTTCATCGCCATCATGGGCTGCTGGTACAT
ACAACCGATGTCGTCTGTGGACCGCCTGCCCCTCCACGACGTGATCCTCC
AAGCCTTCATCATGGCCGTGACTATCGTCGTCGTCGCCGTCCCCGAAGGC
CTCCCGCTCGCCGTCACCATCTCCCTCGCCTACTCCACCAAGAAGATGCT
CCGCGACCAGAACCTGATCCGACATCTAGCCGCCTGCGAGACGATGGGCA
ATGCCACGGCCATCTGCAGCGACAAGACGGGCACCCTCACGGAGAATAGG
ATGGCCGTCACCAAATGCTACATGGCCGATCTGGGTGCTCTTGACTGCCC
CCCCCCCTCCCTCCCTCCCGGCTTGACCCGCCTGCTGGCCCAAGGAATCG
CGCTCAACACCACAGCCAACCTGGATAAGGGCCTCCGCCACACGGACGAG
GACGAGGGCGAGGGCGAGGGCGAGGACGAGCTCAAGGACGAGAAAGAAGA
CGAGAAGGAAGCGGGAGACAAGGGGAAGAACGGCCGCTCCCTCTCCTCCT
CTTCCTCCGCCCTCCCCCCCTCTCCCAAGAAGAGGCTCATCCAGGTGCTT
GGGAACAAGACGGAGGGTGCCCTCCTCCTCATGGCCGACAAGTACGGCGT
AGACTATGACAAGATCCGCGAGCAGCACCGGGGCTCGATTCAGTACAACC
CCTTCTCGTCCAAGCGGAAGAAGATGAGCGTCCTGGTGCCCGAGGGCGGG
GACAAGAAGCACCGGATGCTGTATGTGAAGGGCGCAGCCGAGATGGTCCT
CGCCTCCTGCACGCACATCTGCCGGGCCTTGGATGGGGAGTCGGTGCCCA
TCGACGCCGCCAAGCGGAAGGAGCTCGAGAGCTACATCACTACACTGGCC
AAACAGAGCCTGCGGACCATCAGCTTGGCCCACCGCAAAATCGAAGCACC
CGCCTCCTCCAACGCCAGGAGCTCGGGCGGTGGGGGCAACCTTGACCTGG
ACGAGCTCGAGGAGAAGCTAACCCTCGACGCCATTGTGGGCATTACGGAC
CCTCTCCGGCCCGAGGTGACCGATGCCGTCCGCGCCTGCCAGAAAGCCGG
CATCATGGTGCGCATGGTCACGGGCGACAACGTAGAGACCGCCAAGGCCA
TTGCGAGACAGAGCGGCATCCTCACCTCCTACGGTACCGTCCTCGAAGGG
CCCGCCTTCCGGGCCTTGACTCCCCGCCAGCTCGACGCACTCCTTCCCTC
CCTACAAGTCCTCGCCCGCTCTTCCCCGGACGACAAACACACGCTGGTGG
CGCGCTTGAATGGCACCCTTCCCGAGACACAGGCAGAATGGGAAGAGGCC
CACCCTGGCCGGTCGTGGGAGACCGAGCGCGACAAGCTCTTACCCGGCTA
CTTGGCCGAATGGGCGGCGTCTCGGGGAGGAGTTGGGGAAGTGGTTGGCG
TAACGGGAGACGGCACCAACGATGCACCGGCCTTGAGGGTCGCGGACGTG
GGGCTGTCGATGGGCTTGAGTGGGACGGAGGTCGCGAAAGAGGCCTCGGA
CATTGTGATCATGGATGACAATTTTGCGAGTATCGTCAAAGCGGTCTTAT
GGGGTCGGAGTGTTTTTGACAACATCCGCAAGTTCCTTCAGTTCCAATTG
ACGGTCAACGTAGTTGCGCTCACCATTACCTTCCTCTCTGCTGTGTCTGG
GTATGACCCGCCTTTGAACGCTGTTATGATGCTGTGGGTCAACTTGATCA
TGGACACCATGGGCGCCCTCGCCCTGGGCACGGAGGCCCCCGCCCCTGAG
CTACTCGTCCGTCGCCCCTACAAGCGCAATGCCTCCCTCATCTCCCGTCC
CATGTGGCGCAATATACTGGTGCAGTCCGCGTACCAGATCGCCATCCTTG
TCCTGCTCCTTTTGCGCGCGAACGAGGTCCTGGCCTTTGAAGGCTGGTGG
GTCCACCAACCGGGCGCTACCCCGCCAGCGCCCATTGAGATGGGCTCGAC
GCGTCACATGACATTGATTTTCAACGCTTTTGTGTTCTGTCAGATCTTCA
ACGAGTTTAATGCGCGATCTCTGGCGGATGATGTAAACATCTTCCGGGGA
TTGGAGAAGAACCCGGTGTTTGTATGTGTCATCTTCTTCACTGTCGTGGT
GCAGTGGTTGGTGGTGCAATACGGTGGGGACTTCACCAAGACCGAGCCCT
TGAGTGCGGAGGAGTGGCGGGCGACCGTACTGTTGGGTTTGTGTGCTATC
CCTCTGGGCGTAGCCATGCGCTTTTTGCCCGTGACTGAGGACCCCGAGAA
CTTTGGTGGGACGGCCGAATCTGGCTTCGAGAATGTGGAGCCTGCGGTCG
ATAACAAGAACCTCCCCGCGCACGCACTGCCACCTTACCTCGTGCACCAC
CACGGGGCGCGCCGGCGGGTGCTATGGCGGTGGGTGGGGGTGCTGTTGCA
GTTGGCGGCTCTGTTTGTGGTGCCTGTCCTGGTCGGCATTTGTATGAAGA
ACCCCGAGCGGTGCCAGTCATTAGGCTGGTTGGACTTTTACAAGTTCTGA
GGATATATAGATGGGAAGGGGAAAAGAAAGGACGAAAAAACATGCAACGG
ACATTAGAGCAGGAATTGACAGAGGAATCGCAATGAAACACAAGTAGAAA
AGGGAAGTGAATCACCCCTCCAACGAAAGAACGAATTTTGGACATCTCTT
ACATAAGTGTATTTAATGCGTTTCCCCCGCTTGACCAGTAATCAGAGGAA
TCCTGTGTGAGGATGGCAAAGCTTCAAGCCTCGCCTCCCCCTACTTCCGA
AGTAGAAAAGGAGGAAAACATCCAGGGTACCGATAGGGAAAGAGAAAAGC
CATCCATTTGGGTTTCTTTAAAGAATGAGAAAACGTCGAGTGCATGGATG
GAAATTATCACTGTTGATTTTAATGTACATTGAAAAAATACTAAGTCCAA
AAGAAGAAACCATTGAACGGC

protein sequence of NO01G05560.1

>NO01G05560.1-protein ID=NO01G05560.1-protein|Name=NO01G05560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1198bp
MKMCFYSVEVQLPHIMPALRREGSRSAMAFDSSTRFLEYYDGSRAAHTVL
HSNSTSLFKLFLIQANCSHSSIHTSQHQSMEPFKIGLRELAELNEDQQTF
QNVSRLRAGGGVSWLLKALLTDRDKGIATREVARRKEAFGSNRLPEQEAE
SWLSIFMGSFNDATLIVLIVSAVVSLAIGLYEDPKKGWVEGVAILTAVLA
VATVTASNDYSKEQQFRALNAVKEDILIKVRRDGYVKAVSVHDVVVGDIV
IVEAGDKVAADGVLLEYYDVTANESSLTGEAEEITKNEDDPFLLSGCQVT
NGNGQMLALAVGKESRWGRIREKLEAETKDTPLQEKLDDMANFIGYMGMG
AALLTFIAIMGCWYIQPMSSVDRLPLHDVILQAFIMAVTIVVVAVPEGLP
LAVTISLAYSTKKMLRDQNLIRHLAACETMGNATAICSDKTGTLTENRMA
VTKCYMADLGALDCPPPSLPPGLTRLLAQGIALNTTANLDKGLRHTDEDE
GEGEGEDELKDEKEDEKEAGDKGKNGRSLSSSSSALPPSPKKRLIQVLGN
KTEGALLLMADKYGVDYDKIREQHRGSIQYNPFSSKRKKMSVLVPEGGDK
KHRMLYVKGAAEMVLASCTHICRALDGESVPIDAAKRKELESYITTLAKQ
SLRTISLAHRKIEAPASSNARSSGGGGNLDLDELEEKLTLDAIVGITDPL
RPEVTDAVRACQKAGIMVRMVTGDNVETAKAIARQSGILTSYGTVLEGPA
FRALTPRQLDALLPSLQVLARSSPDDKHTLVARLNGTLPETQAEWEEAHP
GRSWETERDKLLPGYLAEWAASRGGVGEVVGVTGDGTNDAPALRVADVGL
SMGLSGTEVAKEASDIVIMDDNFASIVKAVLWGRSVFDNIRKFLQFQLTV
NVVALTITFLSAVSGYDPPLNAVMMLWVNLIMDTMGALALGTEAPAPELL
VRRPYKRNASLISRPMWRNILVQSAYQIAILVLLLLRANEVLAFEGWWVH
QPGATPPAPIEMGSTRHMTLIFNAFVFCQIFNEFNARSLADDVNIFRGLE
KNPVFVCVIFFTVVVQWLVVQYGGDFTKTEPLSAEEWRATVLLGLCAIPL
GVAMRFLPVTEDPENFGGTAESGFENVEPAVDNKNLPAHALPPYLVHHHG
ARRRVLWRWVGVLLQLAALFVVPVLVGICMKNPERCQSLGWLDFYKF*

mRNA from alignment at chr1:1532886..1540432+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO01G05560.1 ID=NO01G05560.1|Name=NO01G05560.1|organism=Nannochloropsis oceanica|type=mRNA|length=7547bp|location=Sequence derived from alignment at chr1:1532886..1540432+ (Nannochloropsis oceanica)
CCTCCCCTTCTTCATGTCTTTCCTCCACCTGACATCGCGAGACCATCGAA
AAAAGGTAGATTCAATTTGGACCTTGCAGGCATTGATAAGGACACCCATA
GGCGAGGTAAAAGTCCTTCCCCAACCCTGCTTGGAAGTGATCTAGTAGGG
GTGTACGCTGTGGCTGGGAATCTCGGAGGCTGGGTGATTGAGGCTTTGAA
TGGAAATTCGATGTGTAAAAGCCATTGACAGGCATAATACCCAAATACTT
GATGCCTCGCCCTGTTTATTAAAAAAAACTGCGCTATTATTTTTGAGTCG
ACAAGACGCAGGTTTACGAAAAGTAAAGTCACCACGCACGCGCGCACGCG
CTCGCCGCTTCCGACTTCCAATTTGCGGCGAAGGGGTGATCTTGCCATTA
CTCGTTGTTGCCCTTGCCGTACATCCACATGACTGGCGTGTCGACCATAG
AACAGCATGAAAATGTGCTTTTACAGTGTGGAAGTGCAGCTGCCGCATAT
TATGCCTGCCTTGCGTCGGGAGGGTTCAAGGAGTGCCATGGCATTTGATT
CGTCCACACGCTTTCTCGAATATTATGATGGGTCCCGGGCAGCGCACACT
GTACTGCATTCGAATTCAACAAGCCTTTTCAAGCTTTTTCTTATCCAAGC
CAACTGCTCCCATTCATCAATTCACACATCACAGCACCAGAGCATGGAAC
CCTTCAAGATCGGGCTCCGTGAGCTTGCGGAGCTGAATGAGGATCAACAA
GTAAGTCCCTCCCCCCCCCCCTTTGCCTGCTCCCCTCCGGGCACCTAACC
CTTACACCCCGCCCTTCCTACACCATCCCCGCATCCACCTACAGACGTTC
CAGAATGTTTCACGTCTACGGGCGGGAGGGGGCGTCTCATGGTTGCTCAA
GGCCCTGCTTACGGACCGCGACAAGGGCATTGCCACGCGTGAGGTATGTA
CTCGATCGACTTCCCTTGCCCGCTGTCTTCCCTTTTCTGCTCGGGACAAG
AGATTGCCTTCTGCCAAACCACTTGTCTGATACAGATCGTTAAGACCACA
ATGCCTCGCTTTCTTTCCATGTTGTCTGTAGGGCTTCACATCATCATTCA
TCACCCCTCGTGCTCTATCTCCTCCCTCCCCTCCCCCTTGCCCAGGTGGC
ACGTCGCAAGGAAGCCTTTGGATCGAACCGCCTTCCCGAGCAGGAGGCTG
AATCATGGCTAAGCATCTTCATGGGGAGCTTCAACGATGCCACCTTGATC
GTGCTGATCGTTTCGGCCGTGGTCTCGCTCGCGATCGGTAGGGAGGGAGG
GAAGGAGGGGGGCCAGGAGGAGGAGGAGGAACGTCAGAGAGTAGGAATAT
CTCTCTCTATGTACCAAGAAGATATGCAAGAAAATAATTCATTGAAGACT
CACACCGATTCATCCGCTTCCCTATTCTCTTAAGGCCTATACGAGGACCC
GAAAAAGGGTTGGGTTGAGGGCGTGGCCATCCTGACCGCTGTCCTGGCAG
TTGCCACCGTTACGGCCAGTAACGACTATTCCAAGGAACAGCAATTCCGG
GCCCTTAATGCCGTCAAGGAGGATATTCTTATTAAGGTAGTGTATCTGTG
TGTCGCTTGGATTCCTCCTATCTCTCCTTCCTTCCTTTCCTTTGCTTTCT
GGTCGTTGGTCGTACCCTCCTGATCTTCCCTTCCTGCCTTTCCTCCTTCC
CTCCCTCCCTCCCTCCCTTCTCCTCATTCCCAGGTCCGGCGCGATGGATA
CGTAAAGGCAGTTTCGGTGCATGATGTTGTGGTAGGCGACATCGTTATCG
TGGAGGCGGGGGACAAGGTAAGGAAGGAGGGAGGGAGGGAGGGAGGGAGA
GAGGGAGGGAGGGAGGGAGGAAGGGAGGGAGGGAGGGAGAGAGGAAGGGA
GGGAAGGAGGATGCAGAGGTAAGTACCTTGGTGCTAGCCAGCTTGAAAAC
CCTCCCTCATTCAACCCCCCCTCCCCCCTCCCTCCCTTCCTTTCTCCCTC
CCTCGCGGCAGGTGGCAGCGGACGGCGTGCTGCTGGAGTACTACGATGTA
ACGGCCAACGAGAGTTCGTTAACGGGCGAGGCGGAGGAGATCACCAAGAG
TAAGTCTTCTTGCCCTTCCTCCCTCTCTTCCTCCCTTCCTCTCTCGTCCC
CTCCCTCCCTCTCATCCTACCTCCTCTCTCTTCCTCACCGAAAGATACAG
CCTCTCTTCCCATCCCATCAAGGAAAAGCAGACACGCACTTCCTCCCACC
TGCTCACCCCCCCCTCCCTCCTTCCCTCTCTCCCTCCCCCCCCCTCCTCC
AGACGAGGACGATCCATTCCTCCTCTCGGGTTGCCAAGTAACGAACGGTA
ACGGGCAGATGCTGGCGCTGGCCGTTGGGAAGGAGAGCCGGTGGGGTCGA
ATCCGCGAAAAGCTCGAAGCGGAGACCAAGGACACCCCCTTGCAGGTACA
CGTCCCCTCCCTCCCTCCCTCCCTTCCTCCCTTCCACCCTCCCTCCCTCC
CTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCTTT
CCGTCAGTGGTCTCTGTTGTTCTGAGGCTCTTTTGTTTATTTTCTCACAG
GAAAAACTGGACGACATGGCCAACTTCATCGGGTAAGCACGCCCTCCCTC
CCTCTCTCCCTCCCTCTCTCTCTCCCTCCCTCCCTCCCTCCCTCACTCCC
TTCCTCCCTCCTTTCTTCGCGTTCTCGACCTCTTGACTCACCCACCCATT
TGCTCCCTCCTCCTCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCCTCT
ATCACTCCCTCCCTCCCTCCCTCCCTCCCTCTTTCTCTCCCTCAGGTATA
TGGGCATGGGCGCGGCCCTCCTGACCTTCATCGCCATCATGGGCTGCTGG
TACATACAACCGATGGTACGTAAATGCCTTCCCACAAGAGAAGGGAGGGA
GGAAGGGAGGAAGGGAGGGGCGCGAAAGACGAGGATAGAAACACACACAC
ACACACACACACAACTTTTCGCTCACCTCTCCCTCTCCCTCTCCCTCTTC
CTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTTGCTTCTCCTTC
TTTCCCAGTCGTCTGTGGACCGCCTGCCCCTCCACGACGTGATCCTCCAA
GCCTTCATCATGGCCGTGACTATCGTCGTCGTCGCCGTCCCCGAAGGCCT
CCCGCTCGCCGTCACCATCTCCCTCGCCTACTCCACCAAGAAGGTGAGTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCGTTGTCCCACCGCATCCCCCTCCCTCGGCTTCCCCAGTCCTACCGCCA
GCTGTGCTCCCTCCAACAGAGTCCCTCCCTCCCTCCCTCCCTCCCTCTTT
GACCCACCGCTCTCCCCTCATGACGGAATCCCTCCCTCCTTCCCCTCCCT
CCCTCCCTTTCCCTTCCAGATGCTCCGCGACCAGAACCTGATCCGACATC
TAGCCGCCTGCGAGACGATGGGCAATGCCACGGCCATCTGCAGCGACAAG
ACGGGCACCCTCACGGAGAATAGGATGGCCGTCACCAAATGCTACATGGC
CGGTGAGGAGGGAGGGAGGGAGGGAGGGACGGAGGTGGGCAAGGCCCTTA
TTTACCCTGAACATAAATAAAATGTAAATTCTGTCGTGACGTGCGGGACG
TTTTTATTTCTCGGTATGGACCGTGTGGATTGCATGGAGGAGGAAGGAAG
AGGGGGGAAGGGATGGATGGAGAGAGGGAGGGAGGGAGGCATCGATTGAT
AGGTGAACACAAAGGCCTCGCGATGGCACGACTCCCATGAAGAAAACAGC
ACGTATATCCTTACACCTTTCTTTCTTCCCTCCCTCCCTCCCCCCCTCCC
TCCCTCCCTCCCTCCAGATCTGGGTGCTCTTGACTGCCCCCCCCCCTCCC
TCCCTCCCGGCTTGACCCGCCTGCTGGCCCAAGGAATCGCGCTCAACACC
ACAGCCAACCTGGATAAGGGCCTCCGCCACACGGACGAGGACGAGGGCGA
GGGCGAGGGCGAGGACGAGCTCAAGGACGAGAAAGAAGACGAGAAGGAAG
CGGGAGACAAGGGGAAGGTGAGTAGGTCGTGGATGAAAAACAGAGGGAGG
GAGAGAGGGCGGGAAGGAGGGAGGAGAAGAGGCAAGTTGTCGAGATGCCT
GCACGCACCTTCCCTCATTTTTATACTCCCTCCCGTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCCCGATGTTTCTCCGCCCTCCTCCAGAACG
GCCGCTCCCTCTCCTCCTCTTCCTCCGCCCTCCCCCCCTCTCCCAAGAAG
AGGCTCATCCAGGTGCTTGGGAACAAGACGGAGGGTGCCCTCCTCCTCAT
GGCCGACAAGTACGGCGTAGACTATGACAAGGTACGTCTTTTCCTCTCTC
CCTCCCTCCCTTCACCTCGAATGTGACGAAAGAAGTTACATTCTCCTTTA
CCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTAGATCCGCGAGCAG
CACCGGGGCTCGATTCAGTACAACCCCTTCTCGTCCAAGCGGAAGAAGAT
GAGCGTCCTGGTGCCCGAGGGCGGGGACAAGAAGCACCGGATGCTGTATG
TGAAGGGCGCAGGTAGGCAGGGAGGGAGGGCGGGCGGGAGGGAGGCCAAA
AAGGTAAGGAAATAGGGCATCAACACACAGAGTCGGACGAATCAGCGTAC
ACGCCTTCCGATCGAACCCTCCCTCCCTCTCTCCCTCTCTCCCTCCCTCC
CAGCCGAGATGGTCCTCGCCTCCTGCACGCACATCTGCCGGGCCTTGGAT
GGGGAGTCGGTGCCCATCGACGCCGCCAAGCGGAAGGAGCTCGAGAGCTA
CATCACTACACTGGCCAAACAGAGCCTGCGGACCATCAGGTGGGGAGTGC
GGAGAAGAAAAAGGAGGGAGGGAAGAGGGTGTGGGGGAGTTGCTGTTGAT
GCCTCATCATCATATCATCTGTCCGAGTCTCTTAGAACTCGCGTTACCAC
CCGCTTATATATATATACCCGCTTATAGAATGACGATTTCTGTCGTTGTC
ACTCTCGTTTCTTCTCTCCTTCTCTTCTCTCCCTCTCCCCCTCCCTCCTT
CACCTCCTCCTTCTCCTATCCCACTTAAACATAGCTTGGCCCACCGCAAA
ATCGAAGCACCCGCCTCCTCCAACGCCAGGAGCTCGGGCGGTGGGGGCAA
CCTTGACCTGGACGAGCTCGAGGAGAAGCTAACCCTCGACGCCATTGTGG
GCATTACGGTACCGCCCTCCCTTCCTCCCTCCCTCCCTCACTCCTTCCTT
CCTTCCTCCCCTCCCTCCCTTCCTCTCTCCTTCCCTTCCTCCCTCCCTTC
CTCCCTTCCACCCTATCCGCCTTGCTTCCCCCCAGTACCCGTGAGCTCTC
CCTCGAACACACGACTATGCAACCTCTCAATCTGCCACTCCTTCCTTCCC
TCCCTCCCTCTCTCCCTCCCCCGCCCTTTTCCTCAGGACCCTCTCCGGCC
CGAGGTGACCGATGCCGTCCGCGCCTGCCAGAAAGCCGGCATCATGGTGC
GCATGGTCACGGGCGACAACGTAGAGACCGCCAAGGTACATATATAAAGA
GGGAATGCAAGAATCGAATCCTTTTCCCTATAATACGAACCAACTCACTT
CCCTCCCTCTTTCCCCTGGTAGGCCATTGCGAGACAGAGCGGCATCCTCA
CCTCCTACGGTACCGTCCTCGAAGGGCCCGCCTTCCGGGCCTTGACTCCC
CGCCAGCTCGACGCACTCCTTCCCTCCCTACAAGTCCTCGCCCGCTCTTC
CCCGGACGACAAACACACGCTGGTGGCGCGCTTGAATGGCACCCTTCCCG
AGACACAGGCAGAATGGGAAGAGGCCCACCCTGGCCGGTCGTGGGAGACC
GAGCGCGACAAGCTCTTACCCGGCTACTTGGCCGAATGGGCGGCGTCTCG
GGGAGGAGTTGGGGAAGTGGTTGGCGTAACGGGAGACGGCACCAACGATG
CACCGGCCTTGAGGGTCGCGGACGTGGGGCTGTCGATGGGCTTGAGTGGG
ACGGAGGTCGCGAAAGAGGCCTCGGACATTGTGATCATGGATGACAATTT
TGCGAGTATCGTCAAAGCGGTCTTATGGGGTCGGAGTGTTTTTGACAACA
TCCGCAAGTTCCTTCAGTTCCAATTGACGGTCAACGTAGTTGCGCTCACC
ATTACCTTCCTCTCTGCTGTGTCTGGGTATGACCCGCCTTTGAACGCTGT
TATGATGCTGTGGGTCAACTTGATCATGGACACCATGGGCGCCCTCGCCC
TGGGCACGGAGGCCCCCGCCCCTGAGCTACTCGTCCGTCGCCCCTACAAG
CGCAATGCCTCCCTCATCTCCCGTCCCATGTGGCGCAATATACTGGTGCA
GTCCGCGTACCAGATCGCCATCCTTGTCCTGCTCCTTTTGCGCGCGAACG
AGGTCCTGGCCTTTGAAGGCTGGTGGGTCCACCAACCGGGCGCTACCCCG
CCAGCGCCCATTGAGATGGGCTCGACGCGTCACATGACATTGATTTTCAA
CGCTTTTGTGTTCTGTCAGATCTTCAACGAGTTTAATGCGCGATCTCTGG
CGGATGATGTAAACATCTTCCGGGGATTGGAGAAGAACCCGGTGTTTGTA
TGTGTCATCTTCTTCACTGTCGTGGTGCAGTGGTTGGTGGTGCAATACGG
TGGGGACTTCACCAAGACCGAGCCCTTGAGTGCGGAGGAGTGGCGGGCGA
CCGTACTGTTGGGTTTGTGTGCTATCCCTCTGGGCGTAGCCATGCGCTTT
TTGCCCGTGACTGAGGACCCCGAGAACTTTGGTGGGACGGCCGAATCTGG
CTTCGAGAATGTGGAGCCTGCGGTCGATAACAAGAACCTCCCCGCGCACG
CACTGCCACCTTACCTCGTGCACCACCACGGGGCGCGCCGGCGGGTGCTA
TGGCGGTGGGTGGGGGTGCTGTTGCAGTTGGCGGCTCTGTTTGTGGTGCC
TGTCCTGGTCGGCATTTGTATGAAGAACCCCGAGCGGTGCCAGTCATTAG
GCTGGTTGGACTTTTACAAGTTCTGAGGATATATAGATGGGAAGGGGAAA
AGAAAGGACGAAAAAACATGCAACGGACATTAGAGCAGGAATTGACAGAG
GAATCGCAATGAAACACAAGTAGAAAAGGGAAGTGAATCACCCCTCCAAC
GAAAGAACGAATTTTGGACATCTCTTACATAAGTGTATTTAATGCGTTTC
CCCCGCTTGACCAGTAATCAGAGGAATCCTGTGTGAGGATGGCAAAGCTT
CAAGCCTCGCCTCCCCCTACTTCCGAAGTAGAAAAGGAGGAAAACATCCA
GGGTACCGATAGGGAAAGAGAAAAGCCATCCATTTGGGTTTCTTTAAAGA
ATGAGAAAACGTCGAGTGCATGGATGGAAATTATCACTGTTGATTTTAAT
GTACATTGAAAAAATACTAAGTCCAAAAGAAGAAACCATTGAACGGC

Coding sequence (CDS) from alignment at chr1:1532886..1540432+

>NO01G05560.1 ID=NO01G05560.1|Name=NO01G05560.1|organism=Nannochloropsis oceanica|type=CDS|length=3594bp|location=Sequence derived from alignment at chr1:1532886..1540432+ (Nannochloropsis oceanica)
ATGAAAATGTGCTTTTACAGTGTGGAAGTGCAGCTGCCGCATATTATGCC
TGCCTTGCGTCGGGAGGGTTCAAGGAGTGCCATGGCATTTGATTCGTCCA
CACGCTTTCTCGAATATTATGATGGGTCCCGGGCAGCGCACACTGTACTG
CATTCGAATTCAACAAGCCTTTTCAAGCTTTTTCTTATCCAAGCCAACTG
CTCCCATTCATCAATTCACACATCACAGCACCAGAGCATGGAACCCTTCA
AGATCGGGCTCCGTGAGCTTGCGGAGCTGAATGAGGATCAACAAACGTTC
CAGAATGTTTCACGTCTACGGGCGGGAGGGGGCGTCTCATGGTTGCTCAA
GGCCCTGCTTACGGACCGCGACAAGGGCATTGCCACGCGTGAGGTGGCAC
GTCGCAAGGAAGCCTTTGGATCGAACCGCCTTCCCGAGCAGGAGGCTGAA
TCATGGCTAAGCATCTTCATGGGGAGCTTCAACGATGCCACCTTGATCGT
GCTGATCGTTTCGGCCGTGGTCTCGCTCGCGATCGGCCTATACGAGGACC
CGAAAAAGGGTTGGGTTGAGGGCGTGGCCATCCTGACCGCTGTCCTGGCA
GTTGCCACCGTTACGGCCAGTAACGACTATTCCAAGGAACAGCAATTCCG
GGCCCTTAATGCCGTCAAGGAGGATATTCTTATTAAGGTCCGGCGCGATG
GATACGTAAAGGCAGTTTCGGTGCATGATGTTGTGGTAGGCGACATCGTT
ATCGTGGAGGCGGGGGACAAGGTGGCAGCGGACGGCGTGCTGCTGGAGTA
CTACGATGTAACGGCCAACGAGAGTTCGTTAACGGGCGAGGCGGAGGAGA
TCACCAAGAACGAGGACGATCCATTCCTCCTCTCGGGTTGCCAAGTAACG
AACGGTAACGGGCAGATGCTGGCGCTGGCCGTTGGGAAGGAGAGCCGGTG
GGGTCGAATCCGCGAAAAGCTCGAAGCGGAGACCAAGGACACCCCCTTGC
AGGAAAAACTGGACGACATGGCCAACTTCATCGGGTATATGGGCATGGGC
GCGGCCCTCCTGACCTTCATCGCCATCATGGGCTGCTGGTACATACAACC
GATGTCGTCTGTGGACCGCCTGCCCCTCCACGACGTGATCCTCCAAGCCT
TCATCATGGCCGTGACTATCGTCGTCGTCGCCGTCCCCGAAGGCCTCCCG
CTCGCCGTCACCATCTCCCTCGCCTACTCCACCAAGAAGATGCTCCGCGA
CCAGAACCTGATCCGACATCTAGCCGCCTGCGAGACGATGGGCAATGCCA
CGGCCATCTGCAGCGACAAGACGGGCACCCTCACGGAGAATAGGATGGCC
GTCACCAAATGCTACATGGCCGATCTGGGTGCTCTTGACTGCCCCCCCCC
CTCCCTCCCTCCCGGCTTGACCCGCCTGCTGGCCCAAGGAATCGCGCTCA
ACACCACAGCCAACCTGGATAAGGGCCTCCGCCACACGGACGAGGACGAG
GGCGAGGGCGAGGGCGAGGACGAGCTCAAGGACGAGAAAGAAGACGAGAA
GGAAGCGGGAGACAAGGGGAAGAACGGCCGCTCCCTCTCCTCCTCTTCCT
CCGCCCTCCCCCCCTCTCCCAAGAAGAGGCTCATCCAGGTGCTTGGGAAC
AAGACGGAGGGTGCCCTCCTCCTCATGGCCGACAAGTACGGCGTAGACTA
TGACAAGATCCGCGAGCAGCACCGGGGCTCGATTCAGTACAACCCCTTCT
CGTCCAAGCGGAAGAAGATGAGCGTCCTGGTGCCCGAGGGCGGGGACAAG
AAGCACCGGATGCTGTATGTGAAGGGCGCAGCCGAGATGGTCCTCGCCTC
CTGCACGCACATCTGCCGGGCCTTGGATGGGGAGTCGGTGCCCATCGACG
CCGCCAAGCGGAAGGAGCTCGAGAGCTACATCACTACACTGGCCAAACAG
AGCCTGCGGACCATCAGCTTGGCCCACCGCAAAATCGAAGCACCCGCCTC
CTCCAACGCCAGGAGCTCGGGCGGTGGGGGCAACCTTGACCTGGACGAGC
TCGAGGAGAAGCTAACCCTCGACGCCATTGTGGGCATTACGGACCCTCTC
CGGCCCGAGGTGACCGATGCCGTCCGCGCCTGCCAGAAAGCCGGCATCAT
GGTGCGCATGGTCACGGGCGACAACGTAGAGACCGCCAAGGCCATTGCGA
GACAGAGCGGCATCCTCACCTCCTACGGTACCGTCCTCGAAGGGCCCGCC
TTCCGGGCCTTGACTCCCCGCCAGCTCGACGCACTCCTTCCCTCCCTACA
AGTCCTCGCCCGCTCTTCCCCGGACGACAAACACACGCTGGTGGCGCGCT
TGAATGGCACCCTTCCCGAGACACAGGCAGAATGGGAAGAGGCCCACCCT
GGCCGGTCGTGGGAGACCGAGCGCGACAAGCTCTTACCCGGCTACTTGGC
CGAATGGGCGGCGTCTCGGGGAGGAGTTGGGGAAGTGGTTGGCGTAACGG
GAGACGGCACCAACGATGCACCGGCCTTGAGGGTCGCGGACGTGGGGCTG
TCGATGGGCTTGAGTGGGACGGAGGTCGCGAAAGAGGCCTCGGACATTGT
GATCATGGATGACAATTTTGCGAGTATCGTCAAAGCGGTCTTATGGGGTC
GGAGTGTTTTTGACAACATCCGCAAGTTCCTTCAGTTCCAATTGACGGTC
AACGTAGTTGCGCTCACCATTACCTTCCTCTCTGCTGTGTCTGGGTATGA
CCCGCCTTTGAACGCTGTTATGATGCTGTGGGTCAACTTGATCATGGACA
CCATGGGCGCCCTCGCCCTGGGCACGGAGGCCCCCGCCCCTGAGCTACTC
GTCCGTCGCCCCTACAAGCGCAATGCCTCCCTCATCTCCCGTCCCATGTG
GCGCAATATACTGGTGCAGTCCGCGTACCAGATCGCCATCCTTGTCCTGC
TCCTTTTGCGCGCGAACGAGGTCCTGGCCTTTGAAGGCTGGTGGGTCCAC
CAACCGGGCGCTACCCCGCCAGCGCCCATTGAGATGGGCTCGACGCGTCA
CATGACATTGATTTTCAACGCTTTTGTGTTCTGTCAGATCTTCAACGAGT
TTAATGCGCGATCTCTGGCGGATGATGTAAACATCTTCCGGGGATTGGAG
AAGAACCCGGTGTTTGTATGTGTCATCTTCTTCACTGTCGTGGTGCAGTG
GTTGGTGGTGCAATACGGTGGGGACTTCACCAAGACCGAGCCCTTGAGTG
CGGAGGAGTGGCGGGCGACCGTACTGTTGGGTTTGTGTGCTATCCCTCTG
GGCGTAGCCATGCGCTTTTTGCCCGTGACTGAGGACCCCGAGAACTTTGG
TGGGACGGCCGAATCTGGCTTCGAGAATGTGGAGCCTGCGGTCGATAACA
AGAACCTCCCCGCGCACGCACTGCCACCTTACCTCGTGCACCACCACGGG
GCGCGCCGGCGGGTGCTATGGCGGTGGGTGGGGGTGCTGTTGCAGTTGGC
GGCTCTGTTTGTGGTGCCTGTCCTGGTCGGCATTTGTATGAAGAACCCCG
AGCGGTGCCAGTCATTAGGCTGGTTGGACTTTTACAAGTTCTGA

Synonyms

Publications