NO01G05480.1, NO01G05480.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05480.1
Unique NameNO01G05480.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1705
Alignment locationchr1:1504259..1506484 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1504259..1506484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G05480.1 vs.
Match: XP_005855167.1 (mitochondrial ornithine transporter 1 [Nannochloropsis gaditana CCMP526]; EKU21191.1 mitochondrial ornithine transporter 1 [Nannochloropsis gaditana CCMP526]; EWM22765.1 mitochondrial ornithine transporter 1 [Nannochloropsis gaditana])

HSP 1 Score: 532.7 bits (1371), Expect = 8.100e-148
Identity = 274/332 (82.53%), Postives = 301/332 (90.66%), Query Frame = 0 
Query:    1 MSSSSSTTSTTPNATSSISPSITQEGSAGFFPPDVVHAAKDVLSSIVGSAMCVYTGQPFDTVKVRMQARPDAFMSPIQCFMTTFREEGLRALWKGSVPALVGAVSENAVAFSVNQQLKRIIADMEGYGLSTGGGGAEAETEKEGGGVEESLIVPFLTGGFTGIFTSAALCPSDVIKCKVQVSRAMLKTGETAMDAKEMLVHVLKQQGIKGLFVGLGAQFARDIPFYAFFFGTYELSLRTLKIYTSVPQEAAYLIAGGLAGVAGWAAVMPIDMAKSIIQTSSNPKRLIPTMLDVSRARGPLALYSGLGVAIFRAFPANAALFLGYELARELLD 333
            MSSSSS+T+T+PNA +++S  +  +G A FFP DVVHAAKDVLSSIVGSAMCVYTGQPFDTVKVRMQARP+AF SPIQCF++TFREEGLRALWKGSVPALVGAVSENAVAFSVNQQLKRI+AD+EGYGL    G    +  ++    EESL+VPFLTGGFTGIFTSAALCPSDVIKCKVQVSRAMLKTGETAMDA+EMLVHVLK QG+KGLFVGLGAQFARDIPFYAFFFGTYELSL  LK YT++PQE AYL+AGGLAGVAGWAAVMPIDMAKSIIQTS NPK LIPTM+DV+R RGP+ALYSGLGVA+FRAFPANAALFLGYELARE+LD
Sbjct:    1 MSSSSSSTTTSPNAGNNLSAPMAVDGQASFFPADVVHAAKDVLSSIVGSAMCVYTGQPFDTVKVRMQARPEAFSSPIQCFISTFREEGLRALWKGSVPALVGAVSENAVAFSVNQQLKRILADLEGYGL----GNESNQESRKAEAKEESLVVPFLTGGFTGIFTSAALCPSDVIKCKVQVSRAMLKTGETAMDAQEMLVHVLKTQGVKGLFVGLGAQFARDIPFYAFFFGTYELSLVALKAYTTMPQEGAYLVAGGLAGVAGWAAVMPIDMAKSIIQTSPNPKSLIPTMMDVARTRGPMALYSGLGVAVFRAFPANAALFLGYELAREILD 328
The following BLAST results are available for this feature:
BLAST of NO01G05480.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855167.18.100e-14882.53mitochondrial ornithine transporter 1 [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05480NO01G05480Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05480.1NO01G05480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05480.1.cds1NO01G05480.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05480.1.cds2NO01G05480.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05480.1.cds3NO01G05480.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05480.1.cds4NO01G05480.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05480.1 ID=NO01G05480.1|Name=NO01G05480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1705bp
AATAATTGCCCAGCCGCTAGCACGACACGCATCGAGAGGGGGCAACGGGT
TCGCGAGTGCAGGCAATTCGGGTGGTGGAAAAGCACCAGGAGCACTTGGA
TCGATCCATCATCGTCATCACACCACAACTCAGCCGCAACCACACTATTA
TGTCGTCCTCATCCTCCACCACCAGCACTACGCCCAACGCTACTAGCAGT
ATAAGCCCGTCCATCACCCAGGAAGGCAGCGCGGGCTTCTTCCCGCCTGA
CGTTGTGCATGCCGCCAAAGATGTTTTATCATCCATCGTGGGCTCGGCCA
TGTGCGTCTACACAGGGCAGCCATTTGACACCGTTAAAGTGCGCATGCAA
GCCCGACCTGACGCATTTATGTCCCCTATCCAGTGCTTCATGACCACCTT
CAGAGAAGAAGGGCTACGGGCCTTGTGGAAAGGGAGCGTGCCGGCCCTTG
TTGGGGCTGTGAGTGAGAACGCGGTTGCTTTCAGTGTGAATCAACAACTC
AAGCGCATCATTGCCGATATGGAGGGCTACGGCTTGAGCACTGGGGGAGG
TGGAGCTGAGGCAGAGACAGAGAAGGAGGGAGGAGGGGTGGAAGAGAGTT
TAATCGTACCATTTTTGACCGGGGGGTTTACCGGGATCTTCACCTCAGCA
GCCTTATGTCCGAGTGACGTGATAAAGTGCAAAGTCCAGGTGTCGCGGGC
TATGCTAAAGACGGGGGAGACTGCCATGGATGCCAAGGAGATGCTGGTGC
ATGTCCTAAAGCAGCAAGGGATCAAAGGCTTGTTCGTTGGGTTGGGGGCT
CAGTTTGCGCGAGATATCCCGTTCTACGCCTTCTTCTTCGGTACCTACGA
GCTCAGCCTTCGAACCCTCAAGATCTACACCTCCGTCCCGCAGGAGGCAG
CCTATCTGATTGCAGGCGGGCTAGCGGGCGTGGCGGGCTGGGCGGCTGTA
ATGCCCATCGACATGGCCAAGAGCATTATTCAAACCTCATCTAACCCCAA
GAGACTCATTCCCACCATGCTGGACGTATCGCGGGCACGAGGGCCACTAG
CTTTGTACTCAGGTTTGGGTGTGGCCATCTTTCGTGCCTTCCCCGCCAAC
GCCGCATTGTTTCTAGGATACGAATTGGCAAGAGAATTGTTGGATTAAGC
AAAACGAGGAGCAACGGGGGCTCACTGTTTGCGAAAGGCAATGGAAAGGG
CAAGGGTTGGACGCTTGCCTTGTTAGGTCTGCATGAGAGTGGGATAGAGA
GAGGGCAAGAAGGAAAATAGAGGAAGAGGAGGGAGGGGAGAATTATTTTT
CTACATGTGGTGGGATGTGTGTATATCTAACTGCTGATATCTTATGATGC
ATACAACGACTGAAGCGGCAGGATGGACGAGAAGGCCAGAACTGTGGCAA
AAGCCAATGCAAATATGAGAATGTGAACGTGTATGCGAGTGTGGCATCCA
ATTGTGATAGTGGAATAACAGTCTAGGCATGGCATGGGGGGGGGGGAGGG
CAAATGAGGATGGAAAGAGAGGAAGCAACTGATTCTAAAATGGTACAAAC
AATCTAAAAATGAATGAAGTAACCGAGAAATTAACACAAAGATGTCAGTA
AGTGCATCTGACTACCCTTATAGTGTGCATCTTTCCTTTATTTGTCATAT
CTTGTTCTGTCTTCTTTTGATTGATAGATTGATTGATTCTTGTCTTGTCT
TTTTT
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protein sequence of NO01G05480.1

>NO01G05480.1-protein ID=NO01G05480.1-protein|Name=NO01G05480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=333bp
MSSSSSTTSTTPNATSSISPSITQEGSAGFFPPDVVHAAKDVLSSIVGSA
MCVYTGQPFDTVKVRMQARPDAFMSPIQCFMTTFREEGLRALWKGSVPAL
VGAVSENAVAFSVNQQLKRIIADMEGYGLSTGGGGAEAETEKEGGGVEES
LIVPFLTGGFTGIFTSAALCPSDVIKCKVQVSRAMLKTGETAMDAKEMLV
HVLKQQGIKGLFVGLGAQFARDIPFYAFFFGTYELSLRTLKIYTSVPQEA
AYLIAGGLAGVAGWAAVMPIDMAKSIIQTSSNPKRLIPTMLDVSRARGPL
ALYSGLGVAIFRAFPANAALFLGYELARELLD*
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mRNA from alignment at chr1:1504259..1506484-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05480.1 ID=NO01G05480.1|Name=NO01G05480.1|organism=Nannochloropsis oceanica|type=mRNA|length=2226bp|location=Sequence derived from alignment at chr1:1504259..1506484- (Nannochloropsis oceanica)
AATAATTGCCCAGCCGCTAGCACGACACGCATCGAGAGGGGGCAACGGGT
TCGCGAGTGCAGGCAATTCGGGTGGTGGAAAAGCACCAGGAGCACTTGGA
TCGATCCATCATCGTCATCACACCACAACTCAGCCGCAACCACACTATTA
TGTCGTCCTCATCCTCCACCACCAGCACTACGCCCAACGCTACTAGCAGT
ATAAGCCCGTCCATCACCCAGGAAGGCAGCGCGGGCTTCTTCCCGCCTGA
CGTTGTGCATGCCGCCAAAGATGTTTTATCATCCATCGTGGGCTCGGCCA
TGTGCGTCTACACAGGGCAGCCATTTGACACCGGTAAGTGGAGAGATGGC
AGGAAGGGGATAAGACGGGGAAGGAGGATTGCGGGCGGCATTAATGACGC
TTGTGACAATGAAGATTGTACCTCCCTTGCTCACTCTTCCTCTCCCCTCC
TCCCATCCTGCTCTCCCCCCCCATCCACAGTTAAAGTGCGCATGCAAGCC
CGACCTGACGCATTTATGTCCCCTATCCAGTGCTTCATGACCACCTTCAG
AGAAGAAGGGCTACGGGCCTTGTGGAAAGGGAGCGTGCCGGCCCTTGTTG
GGGCTGTGAGTGAGAACGCGGTTGCTTTCAGTGTGAATCAACAACTCAAG
CGCATCATTGCCGATATGGAGGGCTACGGCTTGAGCACTGGGGGAGGTGG
AGCTGAGGCAGAGACAGAGAAGGAGGGAGGAGGGGTGGAAGAGAGTTTAA
TCGTACCATTTTTGACCGGGGGGTTTACCGGGATCTTCACCTCAGCAGCC
TTATGTCCGAGTGACGTGATAAAGTGCAAAGTCCAGGTGTCGCGGGCTAT
GCTAAAGACGGGGGAGACTGCCATGGATGCCAAGGAGATGCTGGTGCATG
TCCTAAAGCAGCAAGGGATCAAAGGCTTGTTCGTTGGGTTGGGGGCTCAG
TTTGCGCGAGATATCCCGTTCTACGCCTTCTTCTTCGGTACCTACGAGCT
CAGCCTTCGAACCCTCAAGATCTACACCTCCGTCCCGCAGGAGGCAGCCT
ATCTGATTGCAGGTGCGTGTTAATTGTCATCTTATTCCCTCTCTCCTTCT
TCTTCTCCCCCCTTTCTACCCCTTGTGAAATCGATCGCATCTTTTGGGGG
CCTCGACTCAGCCCTCATTCCTTCCCCCTCTCCTCCCTCCCTCCTTCCCT
CCCTCCTTCCCTCCCTCCCCAGGCGGGCTAGCGGGCGTGGCGGGCTGGGC
GGCTGTAATGCCCATCGACATGGCCAAGAGCATTATTCAAACCTCATCTA
ACCCCAAGAGACTCATTCCCACCATGCTGGACGTATCGCGGGCACGAGGG
CCACTAGCTTTGTACTCAGGTAAGCGAGGAAGGAGTGAGGGAAGGAGGAA
TAGAAGGTTCATGCTCTAAAATAAACAGGAGGCTGGTCGTGGAAGGACTG
CAAAGGTGGTGTTTCATGCGGCTGTTGTTGGATCAACCTGTACGGTATTA
TCCCTTGCTTTCCCCCTTACCTTGCTCATCTCGTCTTCCCTCCCTTCCTC
TTCCTCCCCCCCTCCTTACTCTATTTCTTCAAGGTTTGGGTGTGGCCATC
TTTCGTGCCTTCCCCGCCAACGCCGCATTGTTTCTAGGATACGAATTGGC
AAGAGAATTGTTGGATTAAGCAAAACGAGGAGCAACGGGGGCTCACTGTT
TGCGAAAGGCAATGGAAAGGGCAAGGGTTGGACGCTTGCCTTGTTAGGTC
TGCATGAGAGTGGGATAGAGAGAGGGCAAGAAGGAAAATAGAGGAAGAGG
AGGGAGGGGAGAATTATTTTTCTACATGTGGTGGGATGTGTGTATATCTA
ACTGCTGATATCTTATGATGCATACAACGACTGAAGCGGCAGGATGGACG
AGAAGGCCAGAACTGTGGCAAAAGCCAATGCAAATATGAGAATGTGAACG
TGTATGCGAGTGTGGCATCCAATTGTGATAGTGGAATAACAGTCTAGGCA
TGGCATGGGGGGGGGGGAGGGCAAATGAGGATGGAAAGAGAGGAAGCAAC
TGATTCTAAAATGGTACAAACAATCTAAAAATGAATGAAGTAACCGAGAA
ATTAACACAAAGATGTCAGTAAGTGCATCTGACTACCCTTATAGTGTGCA
TCTTTCCTTTATTTGTCATATCTTGTTCTGTCTTCTTTTGATTGATAGAT
TGATTGATTCTTGTCTTGTCTTTTTT
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Coding sequence (CDS) from alignment at chr1:1504259..1506484-

>NO01G05480.1 ID=NO01G05480.1|Name=NO01G05480.1|organism=Nannochloropsis oceanica|type=CDS|length=999bp|location=Sequence derived from alignment at chr1:1504259..1506484- (Nannochloropsis oceanica)
ATGTCGTCCTCATCCTCCACCACCAGCACTACGCCCAACGCTACTAGCAG
TATAAGCCCGTCCATCACCCAGGAAGGCAGCGCGGGCTTCTTCCCGCCTG
ACGTTGTGCATGCCGCCAAAGATGTTTTATCATCCATCGTGGGCTCGGCC
ATGTGCGTCTACACAGGGCAGCCATTTGACACCGTTAAAGTGCGCATGCA
AGCCCGACCTGACGCATTTATGTCCCCTATCCAGTGCTTCATGACCACCT
TCAGAGAAGAAGGGCTACGGGCCTTGTGGAAAGGGAGCGTGCCGGCCCTT
GTTGGGGCTGTGAGTGAGAACGCGGTTGCTTTCAGTGTGAATCAACAACT
CAAGCGCATCATTGCCGATATGGAGGGCTACGGCTTGAGCACTGGGGGAG
GTGGAGCTGAGGCAGAGACAGAGAAGGAGGGAGGAGGGGTGGAAGAGAGT
TTAATCGTACCATTTTTGACCGGGGGGTTTACCGGGATCTTCACCTCAGC
AGCCTTATGTCCGAGTGACGTGATAAAGTGCAAAGTCCAGGTGTCGCGGG
CTATGCTAAAGACGGGGGAGACTGCCATGGATGCCAAGGAGATGCTGGTG
CATGTCCTAAAGCAGCAAGGGATCAAAGGCTTGTTCGTTGGGTTGGGGGC
TCAGTTTGCGCGAGATATCCCGTTCTACGCCTTCTTCTTCGGTACCTACG
AGCTCAGCCTTCGAACCCTCAAGATCTACACCTCCGTCCCGCAGGAGGCA
GCCTATCTGATTGCAGGCGGGCTAGCGGGCGTGGCGGGCTGGGCGGCTGT
AATGCCCATCGACATGGCCAAGAGCATTATTCAAACCTCATCTAACCCCA
AGAGACTCATTCCCACCATGCTGGACGTATCGCGGGCACGAGGGCCACTA
GCTTTGTACTCAGGTTTGGGTGTGGCCATCTTTCGTGCCTTCCCCGCCAA
CGCCGCATTGTTTCTAGGATACGAATTGGCAAGAGAATTGTTGGATTAA
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Synonyms
Publications