NO01G05450.1, NO01G05450.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G05450.1
Unique Name	NO01G05450.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2855
Alignment location	chr1:1495503..1499014 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:1495503..1499014 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO01G05450.1 vs.

BLAST of NO01G05450.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO01G05450	NO01G05450	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO01G05450.1	NO01G05450.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO01G05450.1.cds1	NO01G05450.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05450.1.cds2	NO01G05450.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05450.1.cds3	NO01G05450.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05450.1.cds4	NO01G05450.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05450.1.cds5	NO01G05450.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05450.1.cds6	NO01G05450.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:1495503..1499014+
coding sequence from alignment at chr1:1495503..1499014+

mRNA sequence

>NO01G05450.1 ID=NO01G05450.1|Name=NO01G05450.1|organism=Nannochloropsis oceanica|type=mRNA|length=2855bp
ACAGTCTACAACCTCTATAATGAAACCGTTCACAAAAGACAAGACAACTA
CGTCCATAAAGCGGGAATCAGATGGAGTAGTGTTTGAGGTGGATCAACGA
GTAAGCTTCATTGACCCACAGTCAGGCATTTATACGGACGGAATCGTGAT
TGGTATCCATGGACCTGAGGAAATCGAGGTCGGGTATTGGCGTTCAAGTT
GGTCGGATACCAAGTACAACCGATTGGTTTCCGTTGACACACTCCTGAGG
TGCGGCAAGGTCTCTGGCTCGATGAAGAGGAAATCTACAGCTGCAGCTGC
CGCCCCCTCGCCGACGCCAGCGGACACAGCGAAAAGCGCAAATAGCACCA
CGTCTGTCAATAGGGCTTCAGCAAGCGCAGAGATAGCCTCAGGCTCGACG
ACTGGGACAGTTAGCTTCACGAGTACTAGCACAAACAGCAAGGCGTCGAC
GGCAGAAGTAACATCGCCAAAAAGAGACATAGAGAATAACGTCACTGCTT
TCTCCGTCAAGAAAGATGCGAACACGCCTACCCCGGCTGATGAAGCAGAC
TCGACGACCCCAGGTGCTGATGCGGCACCAAGCAGCGCTCAGGTGACATC
AGTGAAGGGCTTGTCCTCCTTTGGTGCTCCTAACGAAGAATCGTTGGCGC
CCACGAAAGAGTGCTCCTCAGTTCCTGACTCAGTTCCTGAGTGTCGGTCC
ACCACCGCCATCTCTCCCGCATTTGCGTCGCTACCACAGAAGGGAGGCAC
GGATCCTACTACAGTCACTTCTTCCAAGGCCATCGCGGCTTCTGTACCCA
TTATTAAGGATTTCCATGTTCGTACTTCCGCCCGTGTCTCGGCTTGCCCC
TTATGCATTGGTTGTGGCACACGAGGTCCTCCTTTGACCGCCAGATCCAC
GATCTCCAAGGAATGGACATGCCAGGCCTGCTTGGAACACGTGAACTCCT
GTTCCCCCAACTCTTCTTTAGCGCCTGTCAGCATGAAAGATCCACTAGCA
CCAGCAGGACCGGGGAAAGTAAAGAAACGAGACCGTGAAACAGAAAGCGG
ACGAAGCAAACAGAGAGGTGAAAAGAAACAAGGGAAGGCTTTCCCAGACA
CGAACAGCGTCTACACGCGCGATATGGGGAAGAATGATGGGGAACGAGAA
ACCAAGTCGGCTGAAGAGGATCACTTCGAGGCAGAGGGCCTGGCTCCCTC
TATTCAAGCTGCGCTGGGTATCAGCCGGTCTTTCCCCCCTCTCCAGGCTC
CGGCAACCTCAGCAGACGCATCGGGTTCCAGTACCTCAGGTCCTGGCATC
ACCCAAGAATGTACTTCTTCTCTTTTCCCCCTTGCTTCCAAAGCGCCCAC
ACCCACATCGGAACTCGCTGCTGGAGCGGAGGTAGCTAATTACAGCGCTT
CTGTACGTCCACACACTGTTCCCCTGCAGCAGCAGCAGCAGTCTCTGGAC
CCCTCCAGCCTAGAAGCGAACTTTCTTCTCAACCCCCTCGAGGGCGGCGA
ATCCCATCCGCTTTACGCTTGGATGCCTTCAGGCTTGAGCGCAGAGGAAC
GAAATTTGCAGATTCAAAAGGGAAAAAAGGACATGTGGGGGACAGCCGTG
GCATTGGTTCGTCTCCGAGAAGAAGTGGAGCGGTGCTTCCAAACGATGGA
CGGAGAAGAGGGCCTGCATCTCGCGGTGGCTCGGCATAAGCAGCAACAGC
ACCACCTCGCACAGCCATTGCCTCTACAGTCCGTCACATCTCAATCATCC
TTTATGCCGCATGGCTCCATGCATGGGTCGTACCTTCATCGTCATCCGCA
GCAGCAGCAGCAGCAGCAGCTGCAGCTGCAGCAGCGTCTTCTTAATGGCC
GTGTCCCTATATCTCACCACCTTGCATGCCAGTCTACCTCTTCTCCGATC
GCAGGACTGCATTTCCCCAACTCTCACCTTACCTCACCGGACCCGGCACC
ATCTATTACCGAGCCAAGGCATCATTTCGGCCAGGGACTTCCGTACCAGC
CTCCTCCTCTTTCACTAAGTTCTCTATGTGCTCCTCCCCAAAGCTACGTG
CAGGGGCATGATTCTTTTTGTCACCAGCAAGGTCAGCAGCCTTTACATGT
CAATCATCAGCAGCATCCGCCACAGACACGACACATGTACGCTTACCCAC
GGTACCAGGAGAAACAGCAGCAGCAGAAACAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGATGATGTACCAGTACCGATAAGGGAGAATTATCTGTAA
GGTAGCAAGAAAAGGGCCGGAAAAGAGGTAAGGGATGAATCGGATGCTAT
GAGAGGAAATAAAGGGGTAAGACATTGGGCACAGAATAGCGTGCATGGTA
GATCGATAGATCCTACAAGGCAGGCATTAGATTCAAAAGAATGACGTGGA
AAGAAGACAAAAATTATAGACACATAGTGCATAAGGAAGATAAACAGTCT
TATGCGGATAAAGGTGAGGAGGCGGGGGAGTAGAGGGGGATAATGGTGGT
AGGAGAAGATAAAATAGTATTTAAAAGCAATAGAGAGAAATAGCCTTAGA
GTACATAGACAAGACAGATTCAAAGCGCGCTTCTTGCCATGAAATACTAA
CTGTATAAACGTCTATAGGACAATCAAAAGACGAGATTAGTGGTAGAAAG
TAGACAGAAAGTAAGCTACGCATGCTTGGGTTGGTGTGCACACTTTTGAG
CCTAGAAGGGATAGGGAAAATGAAGGAACAGAGAAAAAATTTAGGCAACG
AGAAATGGGAGACAAAATCGCGACTGTAAAGACATAAGCAAGAACAAAAA
GCACAATTATTTAACAGTTTACACAAAGTTAAACGAAGGCCTGCCTTGCA
TATTC

protein sequence of NO01G05450.1

>NO01G05450.1-protein ID=NO01G05450.1-protein|Name=NO01G05450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=738bp
MKPFTKDKTTTSIKRESDGVVFEVDQRVSFIDPQSGIYTDGIVIGIHGPE
EIEVGYWRSSWSDTKYNRLVSVDTLLRCGKVSGSMKRKSTAAAAAPSPTP
ADTAKSANSTTSVNRASASAEIASGSTTGTVSFTSTSTNSKASTAEVTSP
KRDIENNVTAFSVKKDANTPTPADEADSTTPGADAAPSSAQVTSVKGLSS
FGAPNEESLAPTKECSSVPDSVPECRSTTAISPAFASLPQKGGTDPTTVT
SSKAIAASVPIIKDFHVRTSARVSACPLCIGCGTRGPPLTARSTISKEWT
CQACLEHVNSCSPNSSLAPVSMKDPLAPAGPGKVKKRDRETESGRSKQRG
EKKQGKAFPDTNSVYTRDMGKNDGERETKSAEEDHFEAEGLAPSIQAALG
ISRSFPPLQAPATSADASGSSTSGPGITQECTSSLFPLASKAPTPTSELA
AGAEVANYSASVRPHTVPLQQQQQSLDPSSLEANFLLNPLEGGESHPLYA
WMPSGLSAEERNLQIQKGKKDMWGTAVALVRLREEVERCFQTMDGEEGLH
LAVARHKQQQHHLAQPLPLQSVTSQSSFMPHGSMHGSYLHRHPQQQQQQQ
LQLQQRLLNGRVPISHHLACQSTSSPIAGLHFPNSHLTSPDPAPSITEPR
HHFGQGLPYQPPPLSLSSLCAPPQSYVQGHDSFCHQQGQQPLHVNHQQHP
PQTRHMYAYPRYQEKQQQQKQQQQQQQQQQQMMYQYR*

mRNA from alignment at chr1:1495503..1499014+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO01G05450.1 ID=NO01G05450.1|Name=NO01G05450.1|organism=Nannochloropsis oceanica|type=mRNA|length=3512bp|location=Sequence derived from alignment at chr1:1495503..1499014+ (Nannochloropsis oceanica)
ACAGTCTACAACCTCTATAATGAAACCGTTCACAAAAGACAAGACAACTA
CGTCCATAAAGCGGGAATCAGATGGAGTAGTGTTTGAGGTACGTTCCACA
GTATGAGATTAGAGGGCCAGTGCTGACATCTCCATTGTAATATGTGTCAA
GATTCTCGGCCATAAGCGTCGCAACCCACTCGTTCACCACTATTTCGACA
GGTGGATCAACGAGTAAGCTTCATTGACCCACAGTCAGGCATTTATACGG
ACGGAATCGTGATTGGTATCCATGGACCTGAGGAAATCGAGGTCGGGTAT
TGGCGTTCAAGTTGGTCGGATACCAAGTAAGTGCTACTTTCATATGACTG
TCCAAACTGTATCGAATGCCGTAAAAGACTGTTGAGAATTTGTTTTCTTG
CATGCATTCTGGATGTTGTTTGGTTCATGAGTTTTAAATCTTCAATTTCT
CGACCTTAAACCCGCTTTTTATGTATTCTAGGTACAACCGATTGGTTTCC
GTTGACACACTCCTGAGGTGCGGCAAGGTCTCTGGCTCGATGAAGAGGGT
ACGTATGCTTGGTCGTCGACGATTTTGAACGCTTTCTAGACCTTGCTTTA
TTTGAAGGCTACAGTGGCGGTCGCAGATACTAAGACACAAATATATATGC
CTGTACACATACGCAATAGAAATCTACAGCTGCAGCTGCCGCCCCCTCGC
CGACGCCAGCGGACACAGCGAAAAGCGCAAATAGCACCACGTCTGTCAAT
AGGGCTTCAGCAAGCGCAGAGATAGCCTCAGGCTCGACGACTGGGACAGT
TAGCTTCACGAGTACTAGCACAAACAGCAAGGCGTCGACGGCAGAAGTAA
CATCGCCAAAAAGAGGTGCGTTCAGATTTGCTTTCCCAGTGTTACAAAGA
CACACTCGAATGCTCACTATTTTTGCTTTTCCCGAAATATATGCAATGTC
TGCCCTTTACTTGCACGCATAACACGCATATCAAAGACATAGAGAATAAC
GTCACTGCTTTCTCCGTCAAGAAAGATGCGAACACGCCTACCCCGGCTGA
TGAAGCAGACTCGACGACCCCAGGTGCTGATGCGGCACCAAGCAGCGCTC
AGGTGACATCAGTGAAGGGCTTGTCCTCCTTTGGTGCTCCTAACGAAGAA
TCGTTGGCGCCCACGAAAGAGTGCTCCTCAGTTCCTGACTCAGTTCCTGA
GTGTCGGTCCACCACCGCCATCTCTCCCGCATTTGCGTCGCTACCACAGA
AGGGAGGCACGGATCCTACTACAGTCACTTCTTCCAAGGCCATCGCGGCT
TCTGTACCCATTATTAAGGATTTCCATGTTCGTACTTCCGCCCGTGTCTC
GGCTTGCCCCTTATGCATTGGTTGTGGCACACGAGGTCCTCCTTTGACCG
CCAGATCCACGATCTCCAAGGAATGGACATGCCAGGCCTGCTTGGAACAC
GTGAACTCCTGTTCCCCCAACTCTTCTTTAGCGCCTGTCAGCATGAAAGA
TCCACTAGCACCAGCAGGACCGGGGAAAGTAAAGAAACGAGACCGTGAAA
CAGAAAGCGGACGAAGCAAACAGAGAGGTGAAAAGAAACAAGGGAAGGCT
TTCCCAGACACGAACAGCGTCTACACGCGCGATATGGGGAAGAATGATGG
GGAACGAGAAACCAAGTCGGCTGAAGAGGATCACTTCGAGGCAGAGGGCC
TGGCTCCCTCTATTCAAGCTGCGCTGGGTATCAGCCGGTCTTTCCCCCCT
CTCCAGGCTCCGGCAACCTCAGCAGACGCATCGGGTTCCAGTACCTCAGG
TCCTGGCATCACCCAAGAATGTACTTCTTCTCTTTTCCCCCTTGCTTCCA
AAGCGCCCACACCCACATCGGAACTCGCTGCTGGAGCGGAGGTAGCTAAT
TACAGCGCTTCTGTACGTCCACACACTGTTCCCCTGCAGCAGCAGCAGCA
GTCTCTGGACCCCTCCAGCCTAGAAGCGGTACGTACATGACGCAGGTCAC
AACAGCATGCATGTATATGTATGTGTTCATATTGAGATAGATTTACCCCT
CTTCGCAGCATCCCTTGCACATATCCACTTCCCTTTCTTTCCTGCTGCTT
CTCACCTTCCTCTGCCCCCTCGCAGAACTTTCTTCTCAACCCCCTCGAGG
GCGGCGAATCCCATCCGCTTTACGCTTGGATGCCTTCAGGCTTGAGCGCA
GAGGAACGAAATTTGCAGATTCAAAAGGGAAAAAAGGACATGTGGGGGAC
AGCCGTGGCATTGGTTCGTCTCCGAGAAGAAGTGGAGCGGTGCTTCCAAA
CGATGGACGGAGAAGAGGGCCTGCATCTCGCGGTGGCTCGGCATAAGCAG
CAACAGCACCACCTCGCACAGCCATTGCCTCTACAGTCCGTCACATCTCA
ATCATCCTTTATGCCGCATGGCTCCATGCATGGGTCGTACCTTCATCGTC
ATCCGCAGCAGCAGCAGCAGCAGCAGCTGCAGCTGCAGCAGCGTCTTCTT
AATGGCCGTGTCCCTATATCTCACCACCTTGCATGCCAGTCTACCTCTTC
TCCGATCGCAGGACTGCATTTCCCCAACTCTCACCTTACCTCACCGGACC
CGGCACCATCTATTACCGAGCCAAGGCATCATTTCGGCCAGGGACTTCCG
TACCAGCCTCCTCCTCTTTCACTAAGTTCTCTATGTGCTCCTCCCCAAAG
CTACGTGCAGGGGCATGATTCTTTTTGTCACCAGCAAGGTCAGCAGCCTT
TACATGTCAATCATCAGCAGCATCCGCCACAGACACGACACATGTACGCT
TACCCACGGTACCAGGAGAAACAGCAGCAGCAGAAACAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGATGATGTACCAGTACCGATAAGGGAGAATTA
TCTGTAAGGTAGCAAGAAAAGGGCCGGAAAAGAGGTAAGGGATGAATCGG
ATGCTATGAGAGGAAATAAAGGGGTAAGACATTGGGCACAGAATAGCGTG
CATGGTAGATCGATAGATCCTACAAGGCAGGCATTAGATTCAAAAGAATG
ACGTGGAAAGAAGACAAAAATTATAGACACATAGTGCATAAGGAAGATAA
ACAGTCTTATGCGGATAAAGGTGAGGAGGCGGGGGAGTAGAGGGGGATAA
TGGTGGTAGGAGAAGATAAAATAGTATTTAAAAGCAATAGAGAGAAATAG
CCTTAGAGTACATAGACAAGACAGATTCAAAGCGCGCTTCTTGCCATGAA
ATACTAACTGTATAAACGTCTATAGGACAATCAAAAGACGAGATTAGTGG
TAGAAAGTAGACAGAAAGTAAGCTACGCATGCTTGGGTTGGTGTGCACAC
TTTTGAGCCTAGAAGGGATAGGGAAAATGAAGGAACAGAGAAAAAATTTA
GGCAACGAGAAATGGGAGACAAAATCGCGACTGTAAAGACATAAGCAAGA
ACAAAAAGCACAATTATTTAACAGTTTACACAAAGTTAAACGAAGGCCTG
CCTTGCATATTC

Coding sequence (CDS) from alignment at chr1:1495503..1499014+

>NO01G05450.1 ID=NO01G05450.1|Name=NO01G05450.1|organism=Nannochloropsis oceanica|type=CDS|length=2214bp|location=Sequence derived from alignment at chr1:1495503..1499014+ (Nannochloropsis oceanica)
ATGAAACCGTTCACAAAAGACAAGACAACTACGTCCATAAAGCGGGAATC
AGATGGAGTAGTGTTTGAGGTGGATCAACGAGTAAGCTTCATTGACCCAC
AGTCAGGCATTTATACGGACGGAATCGTGATTGGTATCCATGGACCTGAG
GAAATCGAGGTCGGGTATTGGCGTTCAAGTTGGTCGGATACCAAGTACAA
CCGATTGGTTTCCGTTGACACACTCCTGAGGTGCGGCAAGGTCTCTGGCT
CGATGAAGAGGAAATCTACAGCTGCAGCTGCCGCCCCCTCGCCGACGCCA
GCGGACACAGCGAAAAGCGCAAATAGCACCACGTCTGTCAATAGGGCTTC
AGCAAGCGCAGAGATAGCCTCAGGCTCGACGACTGGGACAGTTAGCTTCA
CGAGTACTAGCACAAACAGCAAGGCGTCGACGGCAGAAGTAACATCGCCA
AAAAGAGACATAGAGAATAACGTCACTGCTTTCTCCGTCAAGAAAGATGC
GAACACGCCTACCCCGGCTGATGAAGCAGACTCGACGACCCCAGGTGCTG
ATGCGGCACCAAGCAGCGCTCAGGTGACATCAGTGAAGGGCTTGTCCTCC
TTTGGTGCTCCTAACGAAGAATCGTTGGCGCCCACGAAAGAGTGCTCCTC
AGTTCCTGACTCAGTTCCTGAGTGTCGGTCCACCACCGCCATCTCTCCCG
CATTTGCGTCGCTACCACAGAAGGGAGGCACGGATCCTACTACAGTCACT
TCTTCCAAGGCCATCGCGGCTTCTGTACCCATTATTAAGGATTTCCATGT
TCGTACTTCCGCCCGTGTCTCGGCTTGCCCCTTATGCATTGGTTGTGGCA
CACGAGGTCCTCCTTTGACCGCCAGATCCACGATCTCCAAGGAATGGACA
TGCCAGGCCTGCTTGGAACACGTGAACTCCTGTTCCCCCAACTCTTCTTT
AGCGCCTGTCAGCATGAAAGATCCACTAGCACCAGCAGGACCGGGGAAAG
TAAAGAAACGAGACCGTGAAACAGAAAGCGGACGAAGCAAACAGAGAGGT
GAAAAGAAACAAGGGAAGGCTTTCCCAGACACGAACAGCGTCTACACGCG
CGATATGGGGAAGAATGATGGGGAACGAGAAACCAAGTCGGCTGAAGAGG
ATCACTTCGAGGCAGAGGGCCTGGCTCCCTCTATTCAAGCTGCGCTGGGT
ATCAGCCGGTCTTTCCCCCCTCTCCAGGCTCCGGCAACCTCAGCAGACGC
ATCGGGTTCCAGTACCTCAGGTCCTGGCATCACCCAAGAATGTACTTCTT
CTCTTTTCCCCCTTGCTTCCAAAGCGCCCACACCCACATCGGAACTCGCT
GCTGGAGCGGAGGTAGCTAATTACAGCGCTTCTGTACGTCCACACACTGT
TCCCCTGCAGCAGCAGCAGCAGTCTCTGGACCCCTCCAGCCTAGAAGCGA
ACTTTCTTCTCAACCCCCTCGAGGGCGGCGAATCCCATCCGCTTTACGCT
TGGATGCCTTCAGGCTTGAGCGCAGAGGAACGAAATTTGCAGATTCAAAA
GGGAAAAAAGGACATGTGGGGGACAGCCGTGGCATTGGTTCGTCTCCGAG
AAGAAGTGGAGCGGTGCTTCCAAACGATGGACGGAGAAGAGGGCCTGCAT
CTCGCGGTGGCTCGGCATAAGCAGCAACAGCACCACCTCGCACAGCCATT
GCCTCTACAGTCCGTCACATCTCAATCATCCTTTATGCCGCATGGCTCCA
TGCATGGGTCGTACCTTCATCGTCATCCGCAGCAGCAGCAGCAGCAGCAG
CTGCAGCTGCAGCAGCGTCTTCTTAATGGCCGTGTCCCTATATCTCACCA
CCTTGCATGCCAGTCTACCTCTTCTCCGATCGCAGGACTGCATTTCCCCA
ACTCTCACCTTACCTCACCGGACCCGGCACCATCTATTACCGAGCCAAGG
CATCATTTCGGCCAGGGACTTCCGTACCAGCCTCCTCCTCTTTCACTAAG
TTCTCTATGTGCTCCTCCCCAAAGCTACGTGCAGGGGCATGATTCTTTTT
GTCACCAGCAAGGTCAGCAGCCTTTACATGTCAATCATCAGCAGCATCCG
CCACAGACACGACACATGTACGCTTACCCACGGTACCAGGAGAAACAGCA
GCAGCAGAAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGATGATGT
ACCAGTACCGATAA

Synonyms

Publications