NO01G05410.1, NO01G05410.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05410.1
Unique NameNO01G05410.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1041
Alignment locationchr1:1474370..1475410 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1474370..1475410 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G05410.1 vs.
Match: EWM22801.1 (bacteriocin o-metyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 408.7 bits (1049), Expect = 1.800e-110
Identity = 199/301 (66.11%), Postives = 229/301 (76.08%), Query Frame = 0 
Query:   41 QLLASPEDWVERLISRLQWLDPLTSGYDDRPQSVRARAAYLEVIKMHTSGLVYGCEERSAMPSGTTVLLGTTDPAKRGSGLDWTYLGNTMTGGARLNNLESLLEDVFLQGIPGDYIETGVWRGGSSIFARAVMRSYNEGHRMSYVCDSFRGLPPGDRGLNPDDKGWEGLGGHYLEVSANTVASNFHEMGLLDPNVVFAKGFFNDTLTPLSSQIQKLAIMRLDGDMYESTVDALYRLYDKLSMGGYVIIDDWFGFPAQVACVDFFHVHGINPEIIKIDEIAVYWQKTEEIEIQYWRYKTGVF 342
            QLLASPE W+E+L  RL  LD   +   DR  S RARAAYLEV+K++ SGL YG EE S    G    +G   P KR  GLDW YLG TMTGGARL+N+  LLEDV  + IPGDYIETGVWRGGSSIFARAV+RS NEG RMSYVCDSF+GLPPGD+ L+P D GW      YLE SA  VA NF E G+LD NVVFAKGFFN+T+ PL+S+I++LA+MRLDGDMYESTVD LY+LYDKL +GGYVIIDDWFGFPA+ AC DFF VH INPEI  IDE A YW+K E+++IQYWRY+   F
Sbjct:   10 QLLASPESWIEQLTLRLNHLDSKVAANTDRSVSTRARAAYLEVMKLYVSGLAYGPEEMSV---GADATIGPFQPDKRAKGLDWAYLGMTMTGGARLDNVRLLLEDVVSRNIPGDYIETGVWRGGSSIFARAVLRSLNEGGRMSYVCDSFKGLPPGDKLLHPRDHGWNLF--PYLEESAEEVAKNFRESGVLDSNVVFAKGFFNETMPPLASRIKRLAVMRLDGDMYESTVDVLYQLYDKLVVGGYVIIDDWFGFPAKTACEDFFRVHNINPEINVIDETAAYWKKMEDVDIQYWRYEQTKF 305
The following BLAST results are available for this feature:
BLAST of NO01G05410.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22801.11.800e-11066.11bacteriocin o-metyltransferase [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05410NO01G05410Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05410.1NO01G05410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05410.1.cds1NO01G05410.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05410.1 ID=NO01G05410.1|Name=NO01G05410.1|organism=Nannochloropsis oceanica|type=mRNA|length=1041bp
ATGTTGGGGCCACGACTAAAGTTTGCTCTAGAAGAGCGGCCCTTTCAAAC
AATGCAAGGCAAGCATTTTGATATTCTCCGTCCTTGGTACGACATGAGCA
TTCAATGGATTGGTGTGCAACAACTGCTGGCATCTCCCGAGGACTGGGTT
GAGCGGTTGATTTCAAGATTGCAATGGTTGGACCCACTGACATCTGGTTA
CGATGATCGTCCCCAATCTGTGCGCGCTAGAGCTGCCTATCTTGAGGTCA
TCAAAATGCACACATCGGGGCTCGTTTACGGTTGTGAAGAGCGTAGTGCT
ATGCCTTCAGGCACGACTGTTTTGTTGGGCACCACGGATCCAGCCAAAAG
GGGGTCTGGGCTCGATTGGACTTATCTAGGCAATACCATGACGGGAGGTG
CGCGACTCAATAACCTTGAATCATTACTTGAAGATGTCTTTCTGCAAGGC
ATTCCAGGAGATTACATAGAAACTGGGGTATGGCGAGGAGGATCGTCAAT
TTTTGCGCGTGCTGTGATGAGAAGCTACAATGAGGGCCATCGAATGTCAT
ATGTTTGTGATTCTTTTCGAGGTCTTCCCCCTGGAGACAGAGGTTTAAAT
CCTGACGATAAGGGTTGGGAGGGCTTAGGAGGGCATTATTTGGAGGTATC
GGCCAATACGGTCGCCTCGAATTTCCACGAGATGGGCTTACTTGACCCAA
ATGTAGTCTTTGCAAAAGGTTTTTTTAACGACACATTGACACCTTTGTCC
TCTCAAATTCAGAAGTTGGCCATCATGCGTCTAGATGGAGACATGTACGA
GTCAACAGTAGATGCGCTCTATAGGTTATATGACAAACTCAGTATGGGGG
GATATGTTATTATCGACGACTGGTTTGGATTCCCGGCGCAGGTAGCGTGC
GTGGATTTCTTCCACGTACATGGTATCAATCCCGAGATCATTAAAATTGA
TGAAATAGCAGTTTATTGGCAAAAGACCGAAGAGATTGAGATTCAATATT
GGCGGTATAAAACAGGAGTCTTCCGACTAGATTCATCGTAA
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protein sequence of NO01G05410.1

>NO01G05410.1-protein ID=NO01G05410.1-protein|Name=NO01G05410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=347bp
MLGPRLKFALEERPFQTMQGKHFDILRPWYDMSIQWIGVQQLLASPEDWV
ERLISRLQWLDPLTSGYDDRPQSVRARAAYLEVIKMHTSGLVYGCEERSA
MPSGTTVLLGTTDPAKRGSGLDWTYLGNTMTGGARLNNLESLLEDVFLQG
IPGDYIETGVWRGGSSIFARAVMRSYNEGHRMSYVCDSFRGLPPGDRGLN
PDDKGWEGLGGHYLEVSANTVASNFHEMGLLDPNVVFAKGFFNDTLTPLS
SQIQKLAIMRLDGDMYESTVDALYRLYDKLSMGGYVIIDDWFGFPAQVAC
VDFFHVHGINPEIIKIDEIAVYWQKTEEIEIQYWRYKTGVFRLDSS*
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mRNA from alignment at chr1:1474370..1475410+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05410.1 ID=NO01G05410.1|Name=NO01G05410.1|organism=Nannochloropsis oceanica|type=mRNA|length=1041bp|location=Sequence derived from alignment at chr1:1474370..1475410+ (Nannochloropsis oceanica)
ATGTTGGGGCCACGACTAAAGTTTGCTCTAGAAGAGCGGCCCTTTCAAAC
AATGCAAGGCAAGCATTTTGATATTCTCCGTCCTTGGTACGACATGAGCA
TTCAATGGATTGGTGTGCAACAACTGCTGGCATCTCCCGAGGACTGGGTT
GAGCGGTTGATTTCAAGATTGCAATGGTTGGACCCACTGACATCTGGTTA
CGATGATCGTCCCCAATCTGTGCGCGCTAGAGCTGCCTATCTTGAGGTCA
TCAAAATGCACACATCGGGGCTCGTTTACGGTTGTGAAGAGCGTAGTGCT
ATGCCTTCAGGCACGACTGTTTTGTTGGGCACCACGGATCCAGCCAAAAG
GGGGTCTGGGCTCGATTGGACTTATCTAGGCAATACCATGACGGGAGGTG
CGCGACTCAATAACCTTGAATCATTACTTGAAGATGTCTTTCTGCAAGGC
ATTCCAGGAGATTACATAGAAACTGGGGTATGGCGAGGAGGATCGTCAAT
TTTTGCGCGTGCTGTGATGAGAAGCTACAATGAGGGCCATCGAATGTCAT
ATGTTTGTGATTCTTTTCGAGGTCTTCCCCCTGGAGACAGAGGTTTAAAT
CCTGACGATAAGGGTTGGGAGGGCTTAGGAGGGCATTATTTGGAGGTATC
GGCCAATACGGTCGCCTCGAATTTCCACGAGATGGGCTTACTTGACCCAA
ATGTAGTCTTTGCAAAAGGTTTTTTTAACGACACATTGACACCTTTGTCC
TCTCAAATTCAGAAGTTGGCCATCATGCGTCTAGATGGAGACATGTACGA
GTCAACAGTAGATGCGCTCTATAGGTTATATGACAAACTCAGTATGGGGG
GATATGTTATTATCGACGACTGGTTTGGATTCCCGGCGCAGGTAGCGTGC
GTGGATTTCTTCCACGTACATGGTATCAATCCCGAGATCATTAAAATTGA
TGAAATAGCAGTTTATTGGCAAAAGACCGAAGAGATTGAGATTCAATATT
GGCGGTATAAAACAGGAGTCTTCCGACTAGATTCATCGTAA
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Coding sequence (CDS) from alignment at chr1:1474370..1475410+

>NO01G05410.1 ID=NO01G05410.1|Name=NO01G05410.1|organism=Nannochloropsis oceanica|type=CDS|length=1041bp|location=Sequence derived from alignment at chr1:1474370..1475410+ (Nannochloropsis oceanica)
ATGTTGGGGCCACGACTAAAGTTTGCTCTAGAAGAGCGGCCCTTTCAAAC
AATGCAAGGCAAGCATTTTGATATTCTCCGTCCTTGGTACGACATGAGCA
TTCAATGGATTGGTGTGCAACAACTGCTGGCATCTCCCGAGGACTGGGTT
GAGCGGTTGATTTCAAGATTGCAATGGTTGGACCCACTGACATCTGGTTA
CGATGATCGTCCCCAATCTGTGCGCGCTAGAGCTGCCTATCTTGAGGTCA
TCAAAATGCACACATCGGGGCTCGTTTACGGTTGTGAAGAGCGTAGTGCT
ATGCCTTCAGGCACGACTGTTTTGTTGGGCACCACGGATCCAGCCAAAAG
GGGGTCTGGGCTCGATTGGACTTATCTAGGCAATACCATGACGGGAGGTG
CGCGACTCAATAACCTTGAATCATTACTTGAAGATGTCTTTCTGCAAGGC
ATTCCAGGAGATTACATAGAAACTGGGGTATGGCGAGGAGGATCGTCAAT
TTTTGCGCGTGCTGTGATGAGAAGCTACAATGAGGGCCATCGAATGTCAT
ATGTTTGTGATTCTTTTCGAGGTCTTCCCCCTGGAGACAGAGGTTTAAAT
CCTGACGATAAGGGTTGGGAGGGCTTAGGAGGGCATTATTTGGAGGTATC
GGCCAATACGGTCGCCTCGAATTTCCACGAGATGGGCTTACTTGACCCAA
ATGTAGTCTTTGCAAAAGGTTTTTTTAACGACACATTGACACCTTTGTCC
TCTCAAATTCAGAAGTTGGCCATCATGCGTCTAGATGGAGACATGTACGA
GTCAACAGTAGATGCGCTCTATAGGTTATATGACAAACTCAGTATGGGGG
GATATGTTATTATCGACGACTGGTTTGGATTCCCGGCGCAGGTAGCGTGC
GTGGATTTCTTCCACGTACATGGTATCAATCCCGAGATCATTAAAATTGA
TGAAATAGCAGTTTATTGGCAAAAGACCGAAGAGATTGAGATTCAATATT
GGCGGTATAAAACAGGAGTCTTCCGACTAGATTCATCGTAA
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Synonyms
Publications