NO01G05330.1, NO01G05330.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05330.1
Unique NameNO01G05330.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1498
Alignment locationchr1:1421178..1424442 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1421178..1424442 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G05330.1 vs.
Match: XP_009822242.1 (branched-chain amino acid aminotransferase [Aphanomyces astaci]; ETV87379.1 branched-chain amino acid aminotransferase [Aphanomyces astaci])

HSP 1 Score: 505.0 bits (1299), Expect = 2.300e-139
Identity = 222/367 (60.49%), Postives = 288/367 (78.47%), Query Frame = 0
Query:   53 ADIDPKLMTIQRTTTPRAKVPQKELVFGKVFSDHMLEIDWDDEKGWHPPRISPFHPLSLSPAASVLHYALECFEGMKAFKDINGRLRLFRPDLNMARLNTSLARLYMPAVNAEAFIECIKELVRQDRDWVPEGDGYSIYLRPTAISTYPFLGVGATKEIKLYCIMSPVGPYYPEGFNPIRLYADTLNVRAWPGGVGNTKLGGNYGPTIRPQMQATKLGCAQVLWL-GENHTVTEVGAMNVLFFWINEQGEKELITAPLCRGDILPGVTRRSILELARGWGEFKVTERAVGMKEVVKANDEGRLLEAFGAGTAVVVCPIKGILYQGKEVSFIKEGE--QVGPLTIRVWDALTDIQYGKIEHAWSVLID 417
            A +D     I +TT P+AK P+++L FG  FSDH+LE+DWD   GW  P I P+ PL++ PAAS LHYAL+CFEGMKA+ D  G++RLFRP+LNM R+N+S+ RL++P  +++  IEC+K+L+  D+ W+P+GDGYS+Y+RPT +ST+PF+GVGA+ + K+Y I+SPVGPYYPEGFNP++L+AD   VRAWPGG GNTK+GGNYGPTI PQM+A K G +Q+LWL GE H VTE G MN+  +WINEQGEKEL+TAPL RGDILPGVTR+SILELARGWGEFKVTE  + M  +VKA  EGRLLE FG+GTA V+ P+K I Y GK+V+   +    + G LT R+W+ +TDIQYG++EH WSV+I+
Sbjct:   26 AGLDASKTIIHQTTHPKAKTPKEKLTFGSTFSDHLLEVDWDKTSGWGAPLIRPYGPLAIDPAASSLHYALQCFEGMKAYIDDKGKIRLFRPELNMKRMNSSMERLFLPTFDSDELIECLKKLILLDQSWIPQGDGYSLYIRPTGVSTHPFIGVGASSKAKVYVILSPVGPYYPEGFNPVKLFADDKYVRAWPGGTGNTKVGGNYGPTIMPQMEAAKKGYSQILWLFGEEHLVTEAGTMNLFVYWINEQGEKELVTAPLTRGDILPGVTRQSILELARGWGEFKVTETTITMPSIVKAEQEGRLLEVFGSGTAAVISPVKLINYNGKDVNVPLDAPDGKSGQLTKRIWNEMTDIQYGRVEHPWSVVIN 392          
The following BLAST results are available for this feature:
BLAST of NO01G05330.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_009822242.12.300e-13960.49branched-chain amino acid aminotransferase [Aphano... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05330NO01G05330Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05330.1NO01G05330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05330.1.cds1NO01G05330.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05330.1.cds2NO01G05330.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05330.1.cds3NO01G05330.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05330.1.cds4NO01G05330.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05330.1.cds5NO01G05330.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05330.1.cds6NO01G05330.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05330.1.cds7NO01G05330.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05330.1.cds8NO01G05330.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05330.1.cds9NO01G05330.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05330.1.cds10NO01G05330.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05330.1.cds11NO01G05330.1.cds11Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05330.1.cds12NO01G05330.1.cds12Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05330.1 ID=NO01G05330.1|Name=NO01G05330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1498bp
AGGCAGCAAGGCCCATGTCCACGGCGGCGGCAACAGCGGCGGCGGCGGCA
ATGCGGCGGAGCCTTCTCCTGGGCTGTAGCAGCAGGAGCAGCGGCCGTCG
CGTCCTCCCGCCCCTTCACCTTCTGCCGCAGCAACGGCACCACCGACTAC
ACAACGAGGCCGCAAATGGCGCTGATATTGACCCCAAGCTCATGACCATC
CAACGGACAACAACCCCAAGGGCCAAGGTGCCACAGAAGGAGCTTGTGTT
CGGCAAAGTATTTAGCGATCACATGCTCGAAATCGACTGGGACGACGAGA
AGGGCTGGCACCCCCCGAGGATATCCCCCTTCCATCCGCTCTCTCTCTCC
CCCGCCGCCTCCGTCCTCCATTACGCCCTAGAGTGCTTCGAAGGGATGAA
GGCCTTCAAAGACATCAACGGTCGGTTACGTCTCTTCCGTCCAGATTTGA
ACATGGCGAGGCTCAACACCTCCCTGGCCCGCCTGTACATGCCGGCTGTA
AATGCCGAGGCCTTCATAGAGTGCATCAAGGAGCTCGTCCGACAAGACCG
GGACTGGGTCCCTGAGGGCGACGGTTACTCCATTTACCTCCGGCCCACGG
CCATCTCGACCTATCCCTTCCTGGGCGTGGGCGCCACCAAGGAGATCAAG
CTCTACTGCATCATGAGCCCCGTCGGGCCATACTACCCGGAAGGCTTCAA
TCCCATCAGACTCTACGCGGACACCCTCAATGTCCGCGCTTGGCCAGGCG
GCGTGGGCAACACCAAACTGGGTGGGAACTACGGCCCGACCATCCGCCCG
CAGATGCAGGCAACCAAGTTAGGCTGCGCTCAGGTGCTGTGGTTGGGCGA
AAACCACACAGTCACAGAAGTGGGGGCTATGAACGTCCTCTTCTTCTGGA
TCAACGAACAAGGCGAGAAAGAGCTCATAACTGCCCCTCTTTGCAGAGGG
GACATTCTCCCCGGCGTTACCCGCCGCTCCATTTTGGAGCTGGCTCGTGG
GTGGGGAGAGTTTAAGGTGACAGAGCGGGCCGTGGGTATGAAGGAGGTGG
TTAAGGCAAACGATGAGGGGAGGCTCCTCGAGGCCTTTGGGGCAGGCACG
GCCGTGGTGGTGTGTCCAATTAAGGGCATTTTATATCAAGGCAAAGAGGT
GTCTTTCATCAAGGAGGGGGAGCAGGTGGGCCCCCTCACAATAAGGGTTT
GGGATGCACTGACCGACATCCAGTACGGCAAGATTGAACATGCCTGGAGT
GTCCTGATTGACTGAGCGCAAGGATATCGGGAATGAGAGGGGGAGGGGGA
GGATGGGAAGGAGGAAGGGATGGAGGGCATGTGAAGGGAGCAGTGGGAGC
AGCAGCTAGCGCGGCATGTACATAGCAGGGGAGGAGGGAGAGAGGGGAGA
AGCCGAAGGGCCAATGGCGAGGTTGGACAAAAGGAAAAACCTTCGGAGAC
AACGAGGACCTCGTACGAAAAAGGGAGATGTGCAGGGAAAGGGGGGGT
back to top

protein sequence of NO01G05330.1

>NO01G05330.1-protein ID=NO01G05330.1-protein|Name=NO01G05330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=417bp
MSTAAATAAAAAMRRSLLLGCSSRSSGRRVLPPLHLLPQQRHHRLHNEAA
NGADIDPKLMTIQRTTTPRAKVPQKELVFGKVFSDHMLEIDWDDEKGWHP
PRISPFHPLSLSPAASVLHYALECFEGMKAFKDINGRLRLFRPDLNMARL
NTSLARLYMPAVNAEAFIECIKELVRQDRDWVPEGDGYSIYLRPTAISTY
PFLGVGATKEIKLYCIMSPVGPYYPEGFNPIRLYADTLNVRAWPGGVGNT
KLGGNYGPTIRPQMQATKLGCAQVLWLGENHTVTEVGAMNVLFFWINEQG
EKELITAPLCRGDILPGVTRRSILELARGWGEFKVTERAVGMKEVVKAND
EGRLLEAFGAGTAVVVCPIKGILYQGKEVSFIKEGEQVGPLTIRVWDALT
DIQYGKIEHAWSVLID*
back to top

mRNA from alignment at chr1:1421178..1424442-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05330.1 ID=NO01G05330.1|Name=NO01G05330.1|organism=Nannochloropsis oceanica|type=mRNA|length=3265bp|location=Sequence derived from alignment at chr1:1421178..1424442- (Nannochloropsis oceanica)
AGGCAGCAAGGCCCATGTCCACGGCGGCGGCAACAGCGGCGGCGGCGGCA ATGCGGCGGAGCCTTCTCCTGGGCTGTAGCAGCAGGAGCAGCGGCCGTCG CGTCCTCCCGCCCCTTCACCTTCTGCCGCAGCAACGGCACCACCGACTAC ACAACGAGGCCGCAAATGGCGCTGATATTGACGTACGTGGACAGCTTTTG GTCGAAAGGGGCGGGGAGGAATTGGAGGGAGGTGTGAGGGAGGTAGACAG GCAGATAGGCATGCTTACTTTCTATTTCCACCACCCTTGCAGCCCAAGCT CATGACCATCCAACGGACAACAACCCCAAGGGTAAGTGCCGCATCTTCGC ACATTTCTTTTCCCTCGCTCCCGGCTACCAACAGGTATCCACCCATTTCC CGTCGTCCAATTCATTTTCCCCTCCCCTCTTTCCTCCCTCCTTTCTTCCT CCTGATTAATCTGCCACTTCTCGCTCAGGCCAAGGTGCCACAGAAGGAGC TTGTGTTCGGCAAAGTATTTAGCGATCACATGCTCGAAATCGACTGGGAC GACGAGAAGGTGAGAGGGCACGGGGAGGCTGGACGAAAGAACAGGGGAGG AGGAAGGGAGGAAAAGAGGGAGGGAGGGAATGAGGGAGGGGTGTGGCAAG AAAGATCCGAGGCGGCGGGCATGAGCTCGATCGAAGCTGAGATTGCATGG ATTTATAAATCGTTGGTGTTTGTCTGCCGTTCTCGACCAGTGTACCCTCC TAGACCTCCCTCATTCCCTCTCTCCCTCCCTACCTGCCTGCCTCCGTCCT TCCGCAGGGCTGGCACCCCCCGAGGATATCCCCCTTCCATCCGCTCTCTC TCTCCCCCGCCGCCTCCGTCCTCCATTACGCCCTAGAGTGCTTCGAAGGG ATGAAGGCCTTCAAAGACATCAACGGTCGGTTACGTCTCTTCCGTCCAGA TTTGAACATGGCGAGGCTCAACACCTCCCTGGCCCGCCTGTACATGCCGG TAGGGGGGGGGGGAGGGAGGGAGGGAAGGAGGGAGAGAAAGGGGCAGGTA AAATGACCCGATGTGGCTTTTTTCACGCACCCTGCTTTTTTGGGGGTCGA ATGTGCAATAATCGCTCCTACAGGCTGTAAATGCCGAGGCCTTCATAGAG TGCATCAAGTAAGTCCCTCCCTCCCTGCTTCTCTCCTTCCCTCCCTCCCT CCTTCCCTCCTTCCCTCCCTCCCTCCCGTCCATCTTTCTCCACTTGCCAA CACTCTTTCCTCCCCTCCCTTCCTCCCTCTTCACCCCCTCCTCCCAGGGA GCTCGTCCGACAAGACCGGGACTGGGTCCCTGAGGGCGACGGTTACTCCA TTTACCTCCGGCCCACGGCCATCTCGACCTATGTACGTCTCGAGAGAGGA AGGGAGGGAGGAAAGGTGTGGATAAGGACCTGGGAGAGAGGAGGCTCTGC CTTGTGTTTTGGCGGCATAGTTCCTTTTCAATTCTACCACTCGCGCTCAC CCTTCTCTCTCTTCCCTTGCCCTTCCCTCCCTCCCTCCCTCCAGCCCTTC CTGGGCGTGGGCGCCACCAAGGAGATCAAGCTCTACTGCATCATGAGCCC CGTCGGGCCATACTACCCGGAAGGCTTCAATCCCATCAGACTCTACGCGG ACACCCTCAATGTCCGCGCTTGGCCAGGCGGCGTGGGCAACACCAAAGTG CGGTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCGTCCCTTCCTCTCTCC CTCGTCTCGTTATGGCTGACTGGCTTCTCTCCCTCTTTCCCTCTTTCCCT CTCTCCCTCCGCCATTCTCTCCTTCCCCCTACAGCTGGGTGGGAACTACG GCCCGACCATCCGCCCGCAGATGCAGGCAACCAAGTTAGGCTGCGCTCAG GTAGGAGTGTCCTCCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT CCCTCCCTCCCTCCCTCCCTCCCAATCTTGCTCCCTCCCTCCCTCCCTTC CTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCAATCTTGCTCCATCCTT CGCGCACTTTCCGTCATCCCCTTGCCTCTTTCCCAAGGTGCTGTGGTTGG GCGAAAACCACACAGTCACAGAAGTGGGGGCTATGAACGTCCTCTTCTTC TGGATCAACGAACAAGGTGCGTTTCACCCTCCTTCCTTCCCTCCCTCCCT CCCTCCCTCCCTCCCTCCTTCCTTCCCTCCCTCTCTCCTCCCCTCCCTCC CTCCCTCCCCTTCTTGATTTCTGCCTTCATCCTGTTGCAGGCAAGGGGAA ATCCCCGATTGCTGCGCCCTGGCACAACTGTAACCCTCCCTCCCTCCCTC CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAGGCGAGAAAGAG CTCATAACTGCCCCTCTTTGCAGAGGGGACATTCTCCCCGGCGTTACCCG CCGCTCCATTTTGGAGCTGGCTCGTGGGTGGGGAGAGTTTAAGGTGACAG AGCGGGCCGTGGGTATGAAGGAGGTGGTTAAGGCAAACGATGAGGGGAGG GTAAGTCTCATCGATCCTGCGCCCCCCCTCCCCCTGTCCTCCTCCCATCC CTCCTTTCCCTTTCGCGCGCTAAATTGCTCGTTGCTTGTCGCCTCTCATT CCACCCCCTCCCCCCTCTCCTCCGTTCCTCCTCCCTTATTCCCTCAGCTC CTCGAGGCCTTTGGGGCAGGCACGGCCGTGGTGGTGTGTCCAATTAAGGG CATTTTATATCAAGGCAAAGAGGTGTCTTTCATCAAGGAGGGGGAGCAGG TGGGCCCCCTCACAATAAGGGTTTGGGATGCACTGACCGACATCCAGGTA ATACACGGCCCCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCC CAGATGTCTCCACAGTTTCATCCTTCTTGTCATCACCCCTCCCTCTCTCC CATCCCCCCTCCTCCCCCCCCTCACCCTGCCATTTCTTAGTACGGCAAGA TTGAACATGCCTGGAGTGTCCTGATTGACTGAGCGCAAGGATATCGGGAA TGAGAGGGGGAGGGGGAGGATGGGAAGGAGGAAGGGATGGAGGGCATGTG AAGGGAGCAGTGGGAGCAGCAGCTAGCGCGGCATGTACATAGCAGGGGAG GAGGGAGAGAGGGGAGAAGCCGAAGGGCCAATGGCGAGGTTGGACAAAAG GAAAAACCTTCGGAGACAACGAGGACCTCGTACGAAAAAGGGAGATGTGC AGGGAAAGGGGGGGT
back to top

Coding sequence (CDS) from alignment at chr1:1421178..1424442-

>NO01G05330.1 ID=NO01G05330.1|Name=NO01G05330.1|organism=Nannochloropsis oceanica|type=CDS|length=1251bp|location=Sequence derived from alignment at chr1:1421178..1424442- (Nannochloropsis oceanica)
ATGTCCACGGCGGCGGCAACAGCGGCGGCGGCGGCAATGCGGCGGAGCCT
TCTCCTGGGCTGTAGCAGCAGGAGCAGCGGCCGTCGCGTCCTCCCGCCCC
TTCACCTTCTGCCGCAGCAACGGCACCACCGACTACACAACGAGGCCGCA
AATGGCGCTGATATTGACCCCAAGCTCATGACCATCCAACGGACAACAAC
CCCAAGGGCCAAGGTGCCACAGAAGGAGCTTGTGTTCGGCAAAGTATTTA
GCGATCACATGCTCGAAATCGACTGGGACGACGAGAAGGGCTGGCACCCC
CCGAGGATATCCCCCTTCCATCCGCTCTCTCTCTCCCCCGCCGCCTCCGT
CCTCCATTACGCCCTAGAGTGCTTCGAAGGGATGAAGGCCTTCAAAGACA
TCAACGGTCGGTTACGTCTCTTCCGTCCAGATTTGAACATGGCGAGGCTC
AACACCTCCCTGGCCCGCCTGTACATGCCGGCTGTAAATGCCGAGGCCTT
CATAGAGTGCATCAAGGAGCTCGTCCGACAAGACCGGGACTGGGTCCCTG
AGGGCGACGGTTACTCCATTTACCTCCGGCCCACGGCCATCTCGACCTAT
CCCTTCCTGGGCGTGGGCGCCACCAAGGAGATCAAGCTCTACTGCATCAT
GAGCCCCGTCGGGCCATACTACCCGGAAGGCTTCAATCCCATCAGACTCT
ACGCGGACACCCTCAATGTCCGCGCTTGGCCAGGCGGCGTGGGCAACACC
AAACTGGGTGGGAACTACGGCCCGACCATCCGCCCGCAGATGCAGGCAAC
CAAGTTAGGCTGCGCTCAGGTGCTGTGGTTGGGCGAAAACCACACAGTCA
CAGAAGTGGGGGCTATGAACGTCCTCTTCTTCTGGATCAACGAACAAGGC
GAGAAAGAGCTCATAACTGCCCCTCTTTGCAGAGGGGACATTCTCCCCGG
CGTTACCCGCCGCTCCATTTTGGAGCTGGCTCGTGGGTGGGGAGAGTTTA
AGGTGACAGAGCGGGCCGTGGGTATGAAGGAGGTGGTTAAGGCAAACGAT
GAGGGGAGGCTCCTCGAGGCCTTTGGGGCAGGCACGGCCGTGGTGGTGTG
TCCAATTAAGGGCATTTTATATCAAGGCAAAGAGGTGTCTTTCATCAAGG
AGGGGGAGCAGGTGGGCCCCCTCACAATAAGGGTTTGGGATGCACTGACC
GACATCCAGTACGGCAAGATTGAACATGCCTGGAGTGTCCTGATTGACTG
A
back to top
Synonyms
Publications