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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:1421178..1424442 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G05330.1 vs.
Match: XP_009822242.1 (branched-chain amino acid aminotransferase [Aphanomyces astaci]; ETV87379.1 branched-chain amino acid aminotransferase [Aphanomyces astaci]) HSP 1 Score: 505.0 bits (1299), Expect = 2.300e-139 Identity = 222/367 (60.49%), Postives = 288/367 (78.47%), Query Frame = 0
Query: 53 ADIDPKLMTIQRTTTPRAKVPQKELVFGKVFSDHMLEIDWDDEKGWHPPRISPFHPLSLSPAASVLHYALECFEGMKAFKDINGRLRLFRPDLNMARLNTSLARLYMPAVNAEAFIECIKELVRQDRDWVPEGDGYSIYLRPTAISTYPFLGVGATKEIKLYCIMSPVGPYYPEGFNPIRLYADTLNVRAWPGGVGNTKLGGNYGPTIRPQMQATKLGCAQVLWL-GENHTVTEVGAMNVLFFWINEQGEKELITAPLCRGDILPGVTRRSILELARGWGEFKVTERAVGMKEVVKANDEGRLLEAFGAGTAVVVCPIKGILYQGKEVSFIKEGE--QVGPLTIRVWDALTDIQYGKIEHAWSVLID 417
A +D I +TT P+AK P+++L FG FSDH+LE+DWD GW P I P+ PL++ PAAS LHYAL+CFEGMKA+ D G++RLFRP+LNM R+N+S+ RL++P +++ IEC+K+L+ D+ W+P+GDGYS+Y+RPT +ST+PF+GVGA+ + K+Y I+SPVGPYYPEGFNP++L+AD VRAWPGG GNTK+GGNYGPTI PQM+A K G +Q+LWL GE H VTE G MN+ +WINEQGEKEL+TAPL RGDILPGVTR+SILELARGWGEFKVTE + M +VKA EGRLLE FG+GTA V+ P+K I Y GK+V+ + + G LT R+W+ +TDIQYG++EH WSV+I+
Sbjct: 26 AGLDASKTIIHQTTHPKAKTPKEKLTFGSTFSDHLLEVDWDKTSGWGAPLIRPYGPLAIDPAASSLHYALQCFEGMKAYIDDKGKIRLFRPELNMKRMNSSMERLFLPTFDSDELIECLKKLILLDQSWIPQGDGYSLYIRPTGVSTHPFIGVGASSKAKVYVILSPVGPYYPEGFNPVKLFADDKYVRAWPGGTGNTKVGGNYGPTIMPQMEAAKKGYSQILWLFGEEHLVTEAGTMNLFVYWINEQGEKELVTAPLTRGDILPGVTRQSILELARGWGEFKVTETTITMPSIVKAEQEGRLLEVFGSGTAAVISPVKLINYNGKDVNVPLDAPDGKSGQLTKRIWNEMTDIQYGRVEHPWSVVIN 392
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G05330.1 ID=NO01G05330.1|Name=NO01G05330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1498bp AGGCAGCAAGGCCCATGTCCACGGCGGCGGCAACAGCGGCGGCGGCGGCA ATGCGGCGGAGCCTTCTCCTGGGCTGTAGCAGCAGGAGCAGCGGCCGTCG CGTCCTCCCGCCCCTTCACCTTCTGCCGCAGCAACGGCACCACCGACTAC ACAACGAGGCCGCAAATGGCGCTGATATTGACCCCAAGCTCATGACCATC CAACGGACAACAACCCCAAGGGCCAAGGTGCCACAGAAGGAGCTTGTGTT CGGCAAAGTATTTAGCGATCACATGCTCGAAATCGACTGGGACGACGAGA AGGGCTGGCACCCCCCGAGGATATCCCCCTTCCATCCGCTCTCTCTCTCC CCCGCCGCCTCCGTCCTCCATTACGCCCTAGAGTGCTTCGAAGGGATGAA GGCCTTCAAAGACATCAACGGTCGGTTACGTCTCTTCCGTCCAGATTTGA ACATGGCGAGGCTCAACACCTCCCTGGCCCGCCTGTACATGCCGGCTGTA AATGCCGAGGCCTTCATAGAGTGCATCAAGGAGCTCGTCCGACAAGACCG GGACTGGGTCCCTGAGGGCGACGGTTACTCCATTTACCTCCGGCCCACGG CCATCTCGACCTATCCCTTCCTGGGCGTGGGCGCCACCAAGGAGATCAAG CTCTACTGCATCATGAGCCCCGTCGGGCCATACTACCCGGAAGGCTTCAA TCCCATCAGACTCTACGCGGACACCCTCAATGTCCGCGCTTGGCCAGGCG GCGTGGGCAACACCAAACTGGGTGGGAACTACGGCCCGACCATCCGCCCG CAGATGCAGGCAACCAAGTTAGGCTGCGCTCAGGTGCTGTGGTTGGGCGA AAACCACACAGTCACAGAAGTGGGGGCTATGAACGTCCTCTTCTTCTGGA TCAACGAACAAGGCGAGAAAGAGCTCATAACTGCCCCTCTTTGCAGAGGG GACATTCTCCCCGGCGTTACCCGCCGCTCCATTTTGGAGCTGGCTCGTGG GTGGGGAGAGTTTAAGGTGACAGAGCGGGCCGTGGGTATGAAGGAGGTGG TTAAGGCAAACGATGAGGGGAGGCTCCTCGAGGCCTTTGGGGCAGGCACG GCCGTGGTGGTGTGTCCAATTAAGGGCATTTTATATCAAGGCAAAGAGGT GTCTTTCATCAAGGAGGGGGAGCAGGTGGGCCCCCTCACAATAAGGGTTT GGGATGCACTGACCGACATCCAGTACGGCAAGATTGAACATGCCTGGAGT GTCCTGATTGACTGAGCGCAAGGATATCGGGAATGAGAGGGGGAGGGGGA GGATGGGAAGGAGGAAGGGATGGAGGGCATGTGAAGGGAGCAGTGGGAGC AGCAGCTAGCGCGGCATGTACATAGCAGGGGAGGAGGGAGAGAGGGGAGA AGCCGAAGGGCCAATGGCGAGGTTGGACAAAAGGAAAAACCTTCGGAGAC AACGAGGACCTCGTACGAAAAAGGGAGATGTGCAGGGAAAGGGGGGGT back to topprotein sequence of NO01G05330.1 >NO01G05330.1-protein ID=NO01G05330.1-protein|Name=NO01G05330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=417bp MSTAAATAAAAAMRRSLLLGCSSRSSGRRVLPPLHLLPQQRHHRLHNEAA NGADIDPKLMTIQRTTTPRAKVPQKELVFGKVFSDHMLEIDWDDEKGWHP PRISPFHPLSLSPAASVLHYALECFEGMKAFKDINGRLRLFRPDLNMARL NTSLARLYMPAVNAEAFIECIKELVRQDRDWVPEGDGYSIYLRPTAISTY PFLGVGATKEIKLYCIMSPVGPYYPEGFNPIRLYADTLNVRAWPGGVGNT KLGGNYGPTIRPQMQATKLGCAQVLWLGENHTVTEVGAMNVLFFWINEQG EKELITAPLCRGDILPGVTRRSILELARGWGEFKVTERAVGMKEVVKAND EGRLLEAFGAGTAVVVCPIKGILYQGKEVSFIKEGEQVGPLTIRVWDALT DIQYGKIEHAWSVLID* back to topmRNA from alignment at chr1:1421178..1424442- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G05330.1 ID=NO01G05330.1|Name=NO01G05330.1|organism=Nannochloropsis oceanica|type=mRNA|length=3265bp|location=Sequence derived from alignment at chr1:1421178..1424442- (Nannochloropsis oceanica) AGGCAGCAAGGCCCATGTCCACGGCGGCGGCAACAGCGGCGGCGGCGGCA
ATGCGGCGGAGCCTTCTCCTGGGCTGTAGCAGCAGGAGCAGCGGCCGTCG
CGTCCTCCCGCCCCTTCACCTTCTGCCGCAGCAACGGCACCACCGACTAC
ACAACGAGGCCGCAAATGGCGCTGATATTGACGTACGTGGACAGCTTTTG
GTCGAAAGGGGCGGGGAGGAATTGGAGGGAGGTGTGAGGGAGGTAGACAG
GCAGATAGGCATGCTTACTTTCTATTTCCACCACCCTTGCAGCCCAAGCT
CATGACCATCCAACGGACAACAACCCCAAGGGTAAGTGCCGCATCTTCGC
ACATTTCTTTTCCCTCGCTCCCGGCTACCAACAGGTATCCACCCATTTCC
CGTCGTCCAATTCATTTTCCCCTCCCCTCTTTCCTCCCTCCTTTCTTCCT
CCTGATTAATCTGCCACTTCTCGCTCAGGCCAAGGTGCCACAGAAGGAGC
TTGTGTTCGGCAAAGTATTTAGCGATCACATGCTCGAAATCGACTGGGAC
GACGAGAAGGTGAGAGGGCACGGGGAGGCTGGACGAAAGAACAGGGGAGG
AGGAAGGGAGGAAAAGAGGGAGGGAGGGAATGAGGGAGGGGTGTGGCAAG
AAAGATCCGAGGCGGCGGGCATGAGCTCGATCGAAGCTGAGATTGCATGG
ATTTATAAATCGTTGGTGTTTGTCTGCCGTTCTCGACCAGTGTACCCTCC
TAGACCTCCCTCATTCCCTCTCTCCCTCCCTACCTGCCTGCCTCCGTCCT
TCCGCAGGGCTGGCACCCCCCGAGGATATCCCCCTTCCATCCGCTCTCTC
TCTCCCCCGCCGCCTCCGTCCTCCATTACGCCCTAGAGTGCTTCGAAGGG
ATGAAGGCCTTCAAAGACATCAACGGTCGGTTACGTCTCTTCCGTCCAGA
TTTGAACATGGCGAGGCTCAACACCTCCCTGGCCCGCCTGTACATGCCGG
TAGGGGGGGGGGGAGGGAGGGAGGGAAGGAGGGAGAGAAAGGGGCAGGTA
AAATGACCCGATGTGGCTTTTTTCACGCACCCTGCTTTTTTGGGGGTCGA
ATGTGCAATAATCGCTCCTACAGGCTGTAAATGCCGAGGCCTTCATAGAG
TGCATCAAGTAAGTCCCTCCCTCCCTGCTTCTCTCCTTCCCTCCCTCCCT
CCTTCCCTCCTTCCCTCCCTCCCTCCCGTCCATCTTTCTCCACTTGCCAA
CACTCTTTCCTCCCCTCCCTTCCTCCCTCTTCACCCCCTCCTCCCAGGGA
GCTCGTCCGACAAGACCGGGACTGGGTCCCTGAGGGCGACGGTTACTCCA
TTTACCTCCGGCCCACGGCCATCTCGACCTATGTACGTCTCGAGAGAGGA
AGGGAGGGAGGAAAGGTGTGGATAAGGACCTGGGAGAGAGGAGGCTCTGC
CTTGTGTTTTGGCGGCATAGTTCCTTTTCAATTCTACCACTCGCGCTCAC
CCTTCTCTCTCTTCCCTTGCCCTTCCCTCCCTCCCTCCCTCCAGCCCTTC
CTGGGCGTGGGCGCCACCAAGGAGATCAAGCTCTACTGCATCATGAGCCC
CGTCGGGCCATACTACCCGGAAGGCTTCAATCCCATCAGACTCTACGCGG
ACACCCTCAATGTCCGCGCTTGGCCAGGCGGCGTGGGCAACACCAAAGTG
CGGTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCGTCCCTTCCTCTCTCC
CTCGTCTCGTTATGGCTGACTGGCTTCTCTCCCTCTTTCCCTCTTTCCCT
CTCTCCCTCCGCCATTCTCTCCTTCCCCCTACAGCTGGGTGGGAACTACG
GCCCGACCATCCGCCCGCAGATGCAGGCAACCAAGTTAGGCTGCGCTCAG
GTAGGAGTGTCCTCCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCAATCTTGCTCCCTCCCTCCCTCCCTTC
CTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCAATCTTGCTCCATCCTT
CGCGCACTTTCCGTCATCCCCTTGCCTCTTTCCCAAGGTGCTGTGGTTGG
GCGAAAACCACACAGTCACAGAAGTGGGGGCTATGAACGTCCTCTTCTTC
TGGATCAACGAACAAGGTGCGTTTCACCCTCCTTCCTTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCTTCCTTCCCTCCCTCTCTCCTCCCCTCCCTCC
CTCCCTCCCCTTCTTGATTTCTGCCTTCATCCTGTTGCAGGCAAGGGGAA
ATCCCCGATTGCTGCGCCCTGGCACAACTGTAACCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAGGCGAGAAAGAG
CTCATAACTGCCCCTCTTTGCAGAGGGGACATTCTCCCCGGCGTTACCCG
CCGCTCCATTTTGGAGCTGGCTCGTGGGTGGGGAGAGTTTAAGGTGACAG
AGCGGGCCGTGGGTATGAAGGAGGTGGTTAAGGCAAACGATGAGGGGAGG
GTAAGTCTCATCGATCCTGCGCCCCCCCTCCCCCTGTCCTCCTCCCATCC
CTCCTTTCCCTTTCGCGCGCTAAATTGCTCGTTGCTTGTCGCCTCTCATT
CCACCCCCTCCCCCCTCTCCTCCGTTCCTCCTCCCTTATTCCCTCAGCTC
CTCGAGGCCTTTGGGGCAGGCACGGCCGTGGTGGTGTGTCCAATTAAGGG
CATTTTATATCAAGGCAAAGAGGTGTCTTTCATCAAGGAGGGGGAGCAGG
TGGGCCCCCTCACAATAAGGGTTTGGGATGCACTGACCGACATCCAGGTA
ATACACGGCCCCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCC
CAGATGTCTCCACAGTTTCATCCTTCTTGTCATCACCCCTCCCTCTCTCC
CATCCCCCCTCCTCCCCCCCCTCACCCTGCCATTTCTTAGTACGGCAAGA
TTGAACATGCCTGGAGTGTCCTGATTGACTGAGCGCAAGGATATCGGGAA
TGAGAGGGGGAGGGGGAGGATGGGAAGGAGGAAGGGATGGAGGGCATGTG
AAGGGAGCAGTGGGAGCAGCAGCTAGCGCGGCATGTACATAGCAGGGGAG
GAGGGAGAGAGGGGAGAAGCCGAAGGGCCAATGGCGAGGTTGGACAAAAG
GAAAAACCTTCGGAGACAACGAGGACCTCGTACGAAAAAGGGAGATGTGC
AGGGAAAGGGGGGGT back to topCoding sequence (CDS) from alignment at chr1:1421178..1424442- >NO01G05330.1 ID=NO01G05330.1|Name=NO01G05330.1|organism=Nannochloropsis oceanica|type=CDS|length=1251bp|location=Sequence derived from alignment at chr1:1421178..1424442- (Nannochloropsis oceanica) ATGTCCACGGCGGCGGCAACAGCGGCGGCGGCGGCAATGCGGCGGAGCCT TCTCCTGGGCTGTAGCAGCAGGAGCAGCGGCCGTCGCGTCCTCCCGCCCC TTCACCTTCTGCCGCAGCAACGGCACCACCGACTACACAACGAGGCCGCA AATGGCGCTGATATTGACCCCAAGCTCATGACCATCCAACGGACAACAAC CCCAAGGGCCAAGGTGCCACAGAAGGAGCTTGTGTTCGGCAAAGTATTTA GCGATCACATGCTCGAAATCGACTGGGACGACGAGAAGGGCTGGCACCCC CCGAGGATATCCCCCTTCCATCCGCTCTCTCTCTCCCCCGCCGCCTCCGT CCTCCATTACGCCCTAGAGTGCTTCGAAGGGATGAAGGCCTTCAAAGACA TCAACGGTCGGTTACGTCTCTTCCGTCCAGATTTGAACATGGCGAGGCTC AACACCTCCCTGGCCCGCCTGTACATGCCGGCTGTAAATGCCGAGGCCTT CATAGAGTGCATCAAGGAGCTCGTCCGACAAGACCGGGACTGGGTCCCTG AGGGCGACGGTTACTCCATTTACCTCCGGCCCACGGCCATCTCGACCTAT CCCTTCCTGGGCGTGGGCGCCACCAAGGAGATCAAGCTCTACTGCATCAT GAGCCCCGTCGGGCCATACTACCCGGAAGGCTTCAATCCCATCAGACTCT ACGCGGACACCCTCAATGTCCGCGCTTGGCCAGGCGGCGTGGGCAACACC AAACTGGGTGGGAACTACGGCCCGACCATCCGCCCGCAGATGCAGGCAAC CAAGTTAGGCTGCGCTCAGGTGCTGTGGTTGGGCGAAAACCACACAGTCA CAGAAGTGGGGGCTATGAACGTCCTCTTCTTCTGGATCAACGAACAAGGC GAGAAAGAGCTCATAACTGCCCCTCTTTGCAGAGGGGACATTCTCCCCGG CGTTACCCGCCGCTCCATTTTGGAGCTGGCTCGTGGGTGGGGAGAGTTTA AGGTGACAGAGCGGGCCGTGGGTATGAAGGAGGTGGTTAAGGCAAACGAT GAGGGGAGGCTCCTCGAGGCCTTTGGGGCAGGCACGGCCGTGGTGGTGTG TCCAATTAAGGGCATTTTATATCAAGGCAAAGAGGTGTCTTTCATCAAGG AGGGGGAGCAGGTGGGCCCCCTCACAATAAGGGTTTGGGATGCACTGACC GACATCCAGTACGGCAAGATTGAACATGCCTGGAGTGTCCTGATTGACTG A back to top
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