NO01G05300.1, NO01G05300.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05300.1
Unique NameNO01G05300.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1812
Alignment locationchr1:1413532..1415343 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1413532..1415343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G05300.1 vs.
Match: EWM22748.1 (hypothetical protein Naga_100143g3 [Nannochloropsis gaditana])

HSP 1 Score: 204.9 bits (520), Expect = 7.000e-49
Identity = 233/603 (38.64%), Postives = 296/603 (49.09%), Query Frame = 0 
Query:   18 SDEQLLRDFREAKQSILTSTTAHNLATSPPP-RRTAELN---LGDGQLQREITSIVEMPRLERAAAASERKGDDD------PFKWVDEQSDVRVNCVPAADPLSPSGVSS----RASSPNSTSSSEENNDDERSASSCRSRSRANPITSTPSLYSSSSSSSSSPSSSSSSSFSSPPQSQFFD-ASMANKPFSFAEELQWPRKQDQQFWQHQPQEQPQPAQTFSIPFTRAATTPAAAHSTSLLAMLQEEKEQGRQQAARIKELELACVEIQQECQVAIAAARLESHELKCMLRRMASESTFADVFQVYEAHIARVEQEVQILRARNIHLEERRQQHQSHQQQQEQQRQQEEEEKEEEEEEEGLQPTSVGQND--DGEGHDHSINDGEEDRDGSIHHNGNSSLERRGLLSVGTTAAAKLRQSLKARSDVVYHHGKCRGHECKPSSSTNAKSKHSISGAVNGTPKQYEAGRSTATASMTALRCRIKDLQRQVDDFKKETGELRRRERQSLVQKRVVETTWARVMKVQAMAKGLEGSLASSRLEGARAEARLEEAEEEIRVLRQREAALVLDRDKLLLELDLLHRKQLGGGGN--GPSSRQGGESRE 602
            SD+  LRDFRE KQSIL S    +    P P RR +E++   +    L +EI SIV++ + E AA      G           K +    D    C PAA PLS S  SS    RASSP ST S         S                     S  SS  SP++        P    F D  +  N+  S+ +  +    Q+    Q QP   P+     S      A  P+   S +LL ML EEKE+G+ Q ARI+ LE+A  E  QE +VA+A+ARLE HEL+ MLRR+ASESTF+DVF +YEAHIARVE+E  +LR RN+HLE  R            QRQQ EE + +            G+ D   GEG     N  +         N      R+ L      A    + +  + +  +    +  G +  P+    A     + G V    +Q                          +D K+ETGELRRRERQ LVQKR+VETTWARV KVQ MAKGLE SLASSRL+GARAEARLEEAE EIR LRQREA LV+DRD+ L EL+++ R+QLGG GN  G +  +G   RE
Sbjct:   20 SDDNWLRDFREMKQSILMSPAGTSSTGFPSPARRISEVDPAAVNGDHLDQEIKSIVDILQDEDAANKKLNIGSSHHPVIGGKEKAIKGPYDRLTGCAPAASPLSSSSSSSSESSRASSPESTPSPGHGGFKNSS---------------------SHESSCYSPNAYQILRSEQPLAPPFIDDPTEDNRKPSYTDMHRTTNYQELH--QAQPSWAPETQHEES----SLARPPSDIASGNLLRMLYEEKERGQGQKARIQGLEVALAETTQEKEVAMASARLEIHELRGMLRRVASESTFSDVFTLYEAHIARVEKEANVLRDRNVHLEAWRL----------DQRQQSEESRGQ------------GRADACGGEGDSQGCNRPDRPTPSPSRKN------RKSLYGATKPAPHNAQDTFWSPTSALSTAMRMNGSQPAPTGVLVA-----LKGKVKELQRQV-------------------------NDLKQETGELRRRERQFLVQKRMVETTWARVQKVQFMAKGLESSLASSRLDGARAEARLEEAEGEIRALRQREAVLVMDRDRCLQELEVI-RRQLGGVGNARGSAFSKGTHGRE 536
The following BLAST results are available for this feature:
BLAST of NO01G05300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22748.17.000e-4938.64hypothetical protein Naga_100143g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05300NO01G05300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05300.1NO01G05300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05300.1.cds1NO01G05300.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05300.1 ID=NO01G05300.1|Name=NO01G05300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1812bp
ATGTCGACGCCTCCAGGCAGGAGCAACACTACCGCATTGGCCAGAATCAG
CAGCGACGAACAATTGCTACGTGACTTTCGGGAGGCGAAGCAGTCCATCC
TGACATCGACGACGGCGCATAACCTCGCCACATCCCCTCCGCCACGACGC
ACAGCAGAATTGAATTTGGGCGATGGACAGCTTCAGCGCGAGATCACGTC
CATTGTCGAGATGCCCCGACTGGAAAGGGCAGCAGCTGCATCAGAACGAA
AAGGAGATGATGACCCGTTTAAATGGGTAGATGAACAGAGCGATGTACGG
GTGAATTGCGTGCCAGCAGCCGACCCTTTGTCGCCATCGGGAGTCTCGTC
TCGGGCCTCCTCGCCCAACAGCACTTCCTCGTCTGAGGAAAACAACGACG
ACGAAAGGAGCGCCAGCAGCTGCCGCAGTAGAAGTCGAGCAAACCCTATA
ACTAGCACTCCGTCTCTGTACTCTTCTTCTTCTTCCTCCTCCTCCTCACC
TTCCTCTTCTTCATCCTCCTCTTTTTCTTCCCCTCCCCAGTCGCAATTTT
TCGATGCCTCGATGGCGAACAAGCCCTTCTCCTTCGCCGAGGAATTGCAG
TGGCCCCGAAAACAAGACCAGCAGTTCTGGCAGCATCAGCCGCAGGAGCA
GCCTCAGCCAGCCCAAACATTTTCGATACCGTTTACGCGTGCAGCAACCA
CTCCTGCTGCCGCCCATTCGACCTCCTTGCTCGCCATGCTGCAGGAGGAA
AAGGAGCAAGGCCGGCAGCAAGCAGCCCGCATCAAGGAGTTAGAGCTTGC
TTGTGTCGAAATCCAGCAGGAGTGTCAGGTGGCAATTGCAGCGGCCCGCT
TGGAGAGTCACGAGCTCAAGTGCATGCTGCGGCGGATGGCCTCTGAGAGT
ACCTTCGCCGACGTCTTCCAGGTCTACGAGGCACACATTGCCCGCGTGGA
GCAGGAGGTGCAAATATTGCGGGCGCGCAACATACACCTGGAGGAGCGTC
GTCAGCAGCATCAATCTCACCAGCAGCAGCAGGAGCAGCAGCGGCAGCAG
GAGGAGGAGGAGAAGGAGGAGGAGGAAGAGGAGGAGGGCCTTCAACCGAC
GTCCGTAGGGCAGAACGATGATGGAGAAGGCCATGACCACAGCATCAACG
ACGGTGAGGAGGATAGAGACGGTAGTATCCACCATAACGGCAACTCGTCT
CTGGAGCGTCGAGGGCTTCTCTCGGTGGGCACGACTGCGGCAGCCAAACT
CAGGCAGAGTCTGAAGGCCAGGTCCGATGTCGTCTACCACCACGGCAAGT
GCCGAGGCCACGAATGCAAACCCTCCAGCAGCACAAATGCCAAGTCCAAG
CACAGCATCAGCGGAGCCGTGAATGGCACACCAAAGCAGTATGAGGCCGG
TAGATCCACTGCCACAGCATCGATGACTGCTTTGCGATGCAGAATCAAGG
ACTTGCAGCGCCAGGTGGATGACTTCAAAAAGGAAACAGGAGAGCTGCGG
CGACGGGAGCGACAATCTTTGGTGCAAAAGCGGGTAGTGGAGACGACATG
GGCCCGCGTGATGAAGGTCCAGGCCATGGCCAAGGGGCTGGAGGGCAGCC
TGGCTTCGAGTAGGTTGGAGGGTGCTCGTGCAGAGGCTCGGCTAGAGGAG
GCAGAGGAGGAGATTCGAGTACTACGCCAGAGGGAGGCTGCCTTGGTTCT
GGACCGTGACAAGTTATTGCTGGAACTCGATCTCCTGCACCGGAAACAGC
TCGGTGGCGGTGGCAACGGCCCCTCGTCCCGGCAAGGTGGTGAGAGTAGG
GAGACGAGATAA
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protein sequence of NO01G05300.1

>NO01G05300.1-protein ID=NO01G05300.1-protein|Name=NO01G05300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=604bp
MSTPPGRSNTTALARISSDEQLLRDFREAKQSILTSTTAHNLATSPPPRR
TAELNLGDGQLQREITSIVEMPRLERAAAASERKGDDDPFKWVDEQSDVR
VNCVPAADPLSPSGVSSRASSPNSTSSSEENNDDERSASSCRSRSRANPI
TSTPSLYSSSSSSSSSPSSSSSSSFSSPPQSQFFDASMANKPFSFAEELQ
WPRKQDQQFWQHQPQEQPQPAQTFSIPFTRAATTPAAAHSTSLLAMLQEE
KEQGRQQAARIKELELACVEIQQECQVAIAAARLESHELKCMLRRMASES
TFADVFQVYEAHIARVEQEVQILRARNIHLEERRQQHQSHQQQQEQQRQQ
EEEEKEEEEEEEGLQPTSVGQNDDGEGHDHSINDGEEDRDGSIHHNGNSS
LERRGLLSVGTTAAAKLRQSLKARSDVVYHHGKCRGHECKPSSSTNAKSK
HSISGAVNGTPKQYEAGRSTATASMTALRCRIKDLQRQVDDFKKETGELR
RRERQSLVQKRVVETTWARVMKVQAMAKGLEGSLASSRLEGARAEARLEE
AEEEIRVLRQREAALVLDRDKLLLELDLLHRKQLGGGGNGPSSRQGGESR
ETR*
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mRNA from alignment at chr1:1413532..1415343-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05300.1 ID=NO01G05300.1|Name=NO01G05300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1812bp|location=Sequence derived from alignment at chr1:1413532..1415343- (Nannochloropsis oceanica)
ATGTCGACGCCTCCAGGCAGGAGCAACACTACCGCATTGGCCAGAATCAG
CAGCGACGAACAATTGCTACGTGACTTTCGGGAGGCGAAGCAGTCCATCC
TGACATCGACGACGGCGCATAACCTCGCCACATCCCCTCCGCCACGACGC
ACAGCAGAATTGAATTTGGGCGATGGACAGCTTCAGCGCGAGATCACGTC
CATTGTCGAGATGCCCCGACTGGAAAGGGCAGCAGCTGCATCAGAACGAA
AAGGAGATGATGACCCGTTTAAATGGGTAGATGAACAGAGCGATGTACGG
GTGAATTGCGTGCCAGCAGCCGACCCTTTGTCGCCATCGGGAGTCTCGTC
TCGGGCCTCCTCGCCCAACAGCACTTCCTCGTCTGAGGAAAACAACGACG
ACGAAAGGAGCGCCAGCAGCTGCCGCAGTAGAAGTCGAGCAAACCCTATA
ACTAGCACTCCGTCTCTGTACTCTTCTTCTTCTTCCTCCTCCTCCTCACC
TTCCTCTTCTTCATCCTCCTCTTTTTCTTCCCCTCCCCAGTCGCAATTTT
TCGATGCCTCGATGGCGAACAAGCCCTTCTCCTTCGCCGAGGAATTGCAG
TGGCCCCGAAAACAAGACCAGCAGTTCTGGCAGCATCAGCCGCAGGAGCA
GCCTCAGCCAGCCCAAACATTTTCGATACCGTTTACGCGTGCAGCAACCA
CTCCTGCTGCCGCCCATTCGACCTCCTTGCTCGCCATGCTGCAGGAGGAA
AAGGAGCAAGGCCGGCAGCAAGCAGCCCGCATCAAGGAGTTAGAGCTTGC
TTGTGTCGAAATCCAGCAGGAGTGTCAGGTGGCAATTGCAGCGGCCCGCT
TGGAGAGTCACGAGCTCAAGTGCATGCTGCGGCGGATGGCCTCTGAGAGT
ACCTTCGCCGACGTCTTCCAGGTCTACGAGGCACACATTGCCCGCGTGGA
GCAGGAGGTGCAAATATTGCGGGCGCGCAACATACACCTGGAGGAGCGTC
GTCAGCAGCATCAATCTCACCAGCAGCAGCAGGAGCAGCAGCGGCAGCAG
GAGGAGGAGGAGAAGGAGGAGGAGGAAGAGGAGGAGGGCCTTCAACCGAC
GTCCGTAGGGCAGAACGATGATGGAGAAGGCCATGACCACAGCATCAACG
ACGGTGAGGAGGATAGAGACGGTAGTATCCACCATAACGGCAACTCGTCT
CTGGAGCGTCGAGGGCTTCTCTCGGTGGGCACGACTGCGGCAGCCAAACT
CAGGCAGAGTCTGAAGGCCAGGTCCGATGTCGTCTACCACCACGGCAAGT
GCCGAGGCCACGAATGCAAACCCTCCAGCAGCACAAATGCCAAGTCCAAG
CACAGCATCAGCGGAGCCGTGAATGGCACACCAAAGCAGTATGAGGCCGG
TAGATCCACTGCCACAGCATCGATGACTGCTTTGCGATGCAGAATCAAGG
ACTTGCAGCGCCAGGTGGATGACTTCAAAAAGGAAACAGGAGAGCTGCGG
CGACGGGAGCGACAATCTTTGGTGCAAAAGCGGGTAGTGGAGACGACATG
GGCCCGCGTGATGAAGGTCCAGGCCATGGCCAAGGGGCTGGAGGGCAGCC
TGGCTTCGAGTAGGTTGGAGGGTGCTCGTGCAGAGGCTCGGCTAGAGGAG
GCAGAGGAGGAGATTCGAGTACTACGCCAGAGGGAGGCTGCCTTGGTTCT
GGACCGTGACAAGTTATTGCTGGAACTCGATCTCCTGCACCGGAAACAGC
TCGGTGGCGGTGGCAACGGCCCCTCGTCCCGGCAAGGTGGTGAGAGTAGG
GAGACGAGATAA
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Coding sequence (CDS) from alignment at chr1:1413532..1415343-

>NO01G05300.1 ID=NO01G05300.1|Name=NO01G05300.1|organism=Nannochloropsis oceanica|type=CDS|length=1812bp|location=Sequence derived from alignment at chr1:1413532..1415343- (Nannochloropsis oceanica)
ATGTCGACGCCTCCAGGCAGGAGCAACACTACCGCATTGGCCAGAATCAG
CAGCGACGAACAATTGCTACGTGACTTTCGGGAGGCGAAGCAGTCCATCC
TGACATCGACGACGGCGCATAACCTCGCCACATCCCCTCCGCCACGACGC
ACAGCAGAATTGAATTTGGGCGATGGACAGCTTCAGCGCGAGATCACGTC
CATTGTCGAGATGCCCCGACTGGAAAGGGCAGCAGCTGCATCAGAACGAA
AAGGAGATGATGACCCGTTTAAATGGGTAGATGAACAGAGCGATGTACGG
GTGAATTGCGTGCCAGCAGCCGACCCTTTGTCGCCATCGGGAGTCTCGTC
TCGGGCCTCCTCGCCCAACAGCACTTCCTCGTCTGAGGAAAACAACGACG
ACGAAAGGAGCGCCAGCAGCTGCCGCAGTAGAAGTCGAGCAAACCCTATA
ACTAGCACTCCGTCTCTGTACTCTTCTTCTTCTTCCTCCTCCTCCTCACC
TTCCTCTTCTTCATCCTCCTCTTTTTCTTCCCCTCCCCAGTCGCAATTTT
TCGATGCCTCGATGGCGAACAAGCCCTTCTCCTTCGCCGAGGAATTGCAG
TGGCCCCGAAAACAAGACCAGCAGTTCTGGCAGCATCAGCCGCAGGAGCA
GCCTCAGCCAGCCCAAACATTTTCGATACCGTTTACGCGTGCAGCAACCA
CTCCTGCTGCCGCCCATTCGACCTCCTTGCTCGCCATGCTGCAGGAGGAA
AAGGAGCAAGGCCGGCAGCAAGCAGCCCGCATCAAGGAGTTAGAGCTTGC
TTGTGTCGAAATCCAGCAGGAGTGTCAGGTGGCAATTGCAGCGGCCCGCT
TGGAGAGTCACGAGCTCAAGTGCATGCTGCGGCGGATGGCCTCTGAGAGT
ACCTTCGCCGACGTCTTCCAGGTCTACGAGGCACACATTGCCCGCGTGGA
GCAGGAGGTGCAAATATTGCGGGCGCGCAACATACACCTGGAGGAGCGTC
GTCAGCAGCATCAATCTCACCAGCAGCAGCAGGAGCAGCAGCGGCAGCAG
GAGGAGGAGGAGAAGGAGGAGGAGGAAGAGGAGGAGGGCCTTCAACCGAC
GTCCGTAGGGCAGAACGATGATGGAGAAGGCCATGACCACAGCATCAACG
ACGGTGAGGAGGATAGAGACGGTAGTATCCACCATAACGGCAACTCGTCT
CTGGAGCGTCGAGGGCTTCTCTCGGTGGGCACGACTGCGGCAGCCAAACT
CAGGCAGAGTCTGAAGGCCAGGTCCGATGTCGTCTACCACCACGGCAAGT
GCCGAGGCCACGAATGCAAACCCTCCAGCAGCACAAATGCCAAGTCCAAG
CACAGCATCAGCGGAGCCGTGAATGGCACACCAAAGCAGTATGAGGCCGG
TAGATCCACTGCCACAGCATCGATGACTGCTTTGCGATGCAGAATCAAGG
ACTTGCAGCGCCAGGTGGATGACTTCAAAAAGGAAACAGGAGAGCTGCGG
CGACGGGAGCGACAATCTTTGGTGCAAAAGCGGGTAGTGGAGACGACATG
GGCCCGCGTGATGAAGGTCCAGGCCATGGCCAAGGGGCTGGAGGGCAGCC
TGGCTTCGAGTAGGTTGGAGGGTGCTCGTGCAGAGGCTCGGCTAGAGGAG
GCAGAGGAGGAGATTCGAGTACTACGCCAGAGGGAGGCTGCCTTGGTTCT
GGACCGTGACAAGTTATTGCTGGAACTCGATCTCCTGCACCGGAAACAGC
TCGGTGGCGGTGGCAACGGCCCCTCGTCCCGGCAAGGTGGTGAGAGTAGG
GAGACGAGATAA
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Synonyms
Publications