NO01G05290.1, NO01G05290.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05290.1
Unique NameNO01G05290.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1245
Alignment locationchr1:1412060..1413304 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1412060..1413304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G05290.1 vs.
Match: EWM22751.1 (hypothetical protein Naga_100143g4 [Nannochloropsis gaditana])

HSP 1 Score: 97.1 bits (240), Expect = 1.400e-16
Identity = 116/423 (27.42%), Postives = 188/423 (44.44%), Query Frame = 0 
Query:    4 SRFANSFGNSICHEPVQDHVQAFLARYKLVVCMNFFVLFALCICSGFFSSSSSSSSSQMGNYKGPVGNSKSYQPYMDYQTKTTTMRPSSSSPAAARGRLRGLSRRDKG----ETLHKASSLHTYSSSSSPGAATHVPQSPPRRFVPGTLPQAEDKPVVVATSAAASPPPAETTSMPTKSTTASKTGTSNGSSKK----KALLSNLVSSTKPNADLLMTIAEDEREDIPAAPASAAVVDTLKDTFDARFMSIHTVGNAAPVQCTFSEALEGEKAMPSVHADLGLGVEEGGDQNVRAAFTNSEEK----REIA-ETWNAFKEADGINVDHSVASLCPLTPSRSEAQEEPAVEVEEVGVS---PNSQVMETEQSGHTVMAMEATEKELKGEPSQQMEEKVIMQLLHRRHPLDFIPPFVRDDIVCMN 411
            SR A+S  +   +    DH + F AR K V+CMNF +   LCICSG F+  ++ SS+             S + +  Y    +    S+S   ++  RLR LS  + G    +  +K+SS    SSS  P ++THVPQ PP RF+PGTLPQ++D       +  A+   A  ++  ++    +    SN   KK    K LL++L SS    ++   +        + +AP    + +            + T  +  P+QCT  E         S   D  +   E GD N   A T+SEE      ++A +  + +   + +   HS +SLCPL  S   +   P  E + V  S   P+  + +   +G  +  +E+T +  + +  +     V       R PLD+IPPF  ++I C++
Sbjct:   17 SRPASSLLDERVNLQSYDHSKTFSARCKHVICMNFLIFLVLCICSGIFTFQANISST-------------SRRVHKQYTEDRSNKVSSTSLFRSSNWRLRRLSPEETGKRRRQKSYKSSSTSEPSSSQLPVSSTHVPQRPPPRFIPGTLPQSKDISTAPLAAKFAALDDASASAERSEGVRTAPMTKSNRDIKKVSGRKKLLNSLTSSIDARSETDASEVHTGEAQMTSAPPPVEMKEE---------EPLFTHEDVVPIQCTSHEM--------SRTMDFAISQVEDGDVNCVDA-TDSEEHLLSVEDVAMQAPDEYTSGEALASPHSPSSLCPLASSWIGSGNGPQREDKHVSESFELPSEAIRDAVTAGEILEILESTTELEEVDIPESGSASV-------RDPLDYIPPFALEEIACVD 401
The following BLAST results are available for this feature:
BLAST of NO01G05290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22751.11.400e-1627.42hypothetical protein Naga_100143g4 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05290NO01G05290Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05290.1NO01G05290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05290.1.cds1NO01G05290.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05290.1 ID=NO01G05290.1|Name=NO01G05290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1245bp
ATGCCCGCATCCCGGTTCGCGAACTCCTTTGGGAACAGCATCTGTCATGA
GCCCGTGCAAGATCATGTCCAGGCCTTCCTCGCCCGCTACAAGTTGGTGG
TCTGCATGAATTTCTTCGTACTTTTTGCACTGTGCATCTGCAGTGGCTTC
TTCAGCAGCAGTAGCAGCAGCAGCAGCAGTCAGATGGGCAATTATAAAGG
TCCTGTCGGCAACAGCAAATCTTACCAGCCGTACATGGACTACCAAACAA
AAACTACCACTATGCGACCTTCTTCCTCGTCACCCGCGGCAGCACGGGGG
CGGCTTCGTGGCCTGTCTCGTAGGGATAAGGGGGAGACACTGCACAAAGC
GTCAAGTTTGCACACTTATTCCTCATCGTCCTCACCGGGGGCAGCCACAC
ATGTGCCACAGAGCCCTCCGCGTCGTTTTGTTCCGGGTACGCTGCCACAG
GCTGAGGACAAGCCGGTTGTGGTCGCAACGAGTGCTGCAGCATCACCCCC
GCCGGCAGAGACAACCAGCATGCCCACGAAATCAACAACAGCAAGCAAGA
CAGGAACCAGCAACGGTTCGAGCAAGAAAAAGGCCTTGCTAAGCAATCTG
GTGTCCTCGACAAAACCTAACGCAGACTTGTTAATGACCATTGCGGAGGA
TGAAAGGGAAGACATACCTGCAGCCCCGGCCTCAGCGGCAGTGGTAGACA
CCTTGAAAGATACTTTCGATGCACGCTTCATGTCGATCCACACCGTAGGG
AACGCAGCCCCTGTGCAGTGTACATTCAGTGAGGCTCTTGAGGGAGAGAA
AGCCATGCCTTCCGTTCATGCCGACCTCGGACTTGGTGTCGAAGAGGGTG
GTGACCAGAACGTCAGGGCAGCATTTACAAACTCTGAAGAGAAGAGAGAG
ATAGCTGAAACCTGGAATGCATTTAAAGAAGCTGATGGAATCAACGTCGA
TCATTCTGTCGCCTCTTTATGCCCCCTCACGCCATCACGGTCAGAAGCTC
AGGAAGAGCCTGCTGTTGAGGTGGAGGAAGTGGGTGTGTCACCAAACTCT
CAAGTCATGGAAACTGAACAGTCGGGGCATACGGTAATGGCAATGGAGGC
AACAGAGAAGGAGTTAAAAGGGGAGCCAAGCCAGCAGATGGAAGAAAAGG
TGATTATGCAATTGCTGCACCGGCGCCATCCGCTTGACTTCATTCCCCCC
TTTGTCCGTGATGACATCGTTTGCATGAATACGCAGGGGGCTTAA
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protein sequence of NO01G05290.1

>NO01G05290.1-protein ID=NO01G05290.1-protein|Name=NO01G05290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=415bp
MPASRFANSFGNSICHEPVQDHVQAFLARYKLVVCMNFFVLFALCICSGF
FSSSSSSSSSQMGNYKGPVGNSKSYQPYMDYQTKTTTMRPSSSSPAAARG
RLRGLSRRDKGETLHKASSLHTYSSSSSPGAATHVPQSPPRRFVPGTLPQ
AEDKPVVVATSAAASPPPAETTSMPTKSTTASKTGTSNGSSKKKALLSNL
VSSTKPNADLLMTIAEDEREDIPAAPASAAVVDTLKDTFDARFMSIHTVG
NAAPVQCTFSEALEGEKAMPSVHADLGLGVEEGGDQNVRAAFTNSEEKRE
IAETWNAFKEADGINVDHSVASLCPLTPSRSEAQEEPAVEVEEVGVSPNS
QVMETEQSGHTVMAMEATEKELKGEPSQQMEEKVIMQLLHRRHPLDFIPP
FVRDDIVCMNTQGA*
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mRNA from alignment at chr1:1412060..1413304+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05290.1 ID=NO01G05290.1|Name=NO01G05290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1245bp|location=Sequence derived from alignment at chr1:1412060..1413304+ (Nannochloropsis oceanica)
ATGCCCGCATCCCGGTTCGCGAACTCCTTTGGGAACAGCATCTGTCATGA
GCCCGTGCAAGATCATGTCCAGGCCTTCCTCGCCCGCTACAAGTTGGTGG
TCTGCATGAATTTCTTCGTACTTTTTGCACTGTGCATCTGCAGTGGCTTC
TTCAGCAGCAGTAGCAGCAGCAGCAGCAGTCAGATGGGCAATTATAAAGG
TCCTGTCGGCAACAGCAAATCTTACCAGCCGTACATGGACTACCAAACAA
AAACTACCACTATGCGACCTTCTTCCTCGTCACCCGCGGCAGCACGGGGG
CGGCTTCGTGGCCTGTCTCGTAGGGATAAGGGGGAGACACTGCACAAAGC
GTCAAGTTTGCACACTTATTCCTCATCGTCCTCACCGGGGGCAGCCACAC
ATGTGCCACAGAGCCCTCCGCGTCGTTTTGTTCCGGGTACGCTGCCACAG
GCTGAGGACAAGCCGGTTGTGGTCGCAACGAGTGCTGCAGCATCACCCCC
GCCGGCAGAGACAACCAGCATGCCCACGAAATCAACAACAGCAAGCAAGA
CAGGAACCAGCAACGGTTCGAGCAAGAAAAAGGCCTTGCTAAGCAATCTG
GTGTCCTCGACAAAACCTAACGCAGACTTGTTAATGACCATTGCGGAGGA
TGAAAGGGAAGACATACCTGCAGCCCCGGCCTCAGCGGCAGTGGTAGACA
CCTTGAAAGATACTTTCGATGCACGCTTCATGTCGATCCACACCGTAGGG
AACGCAGCCCCTGTGCAGTGTACATTCAGTGAGGCTCTTGAGGGAGAGAA
AGCCATGCCTTCCGTTCATGCCGACCTCGGACTTGGTGTCGAAGAGGGTG
GTGACCAGAACGTCAGGGCAGCATTTACAAACTCTGAAGAGAAGAGAGAG
ATAGCTGAAACCTGGAATGCATTTAAAGAAGCTGATGGAATCAACGTCGA
TCATTCTGTCGCCTCTTTATGCCCCCTCACGCCATCACGGTCAGAAGCTC
AGGAAGAGCCTGCTGTTGAGGTGGAGGAAGTGGGTGTGTCACCAAACTCT
CAAGTCATGGAAACTGAACAGTCGGGGCATACGGTAATGGCAATGGAGGC
AACAGAGAAGGAGTTAAAAGGGGAGCCAAGCCAGCAGATGGAAGAAAAGG
TGATTATGCAATTGCTGCACCGGCGCCATCCGCTTGACTTCATTCCCCCC
TTTGTCCGTGATGACATCGTTTGCATGAATACGCAGGGGGCTTAA
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Coding sequence (CDS) from alignment at chr1:1412060..1413304+

>NO01G05290.1 ID=NO01G05290.1|Name=NO01G05290.1|organism=Nannochloropsis oceanica|type=CDS|length=1245bp|location=Sequence derived from alignment at chr1:1412060..1413304+ (Nannochloropsis oceanica)
ATGCCCGCATCCCGGTTCGCGAACTCCTTTGGGAACAGCATCTGTCATGA
GCCCGTGCAAGATCATGTCCAGGCCTTCCTCGCCCGCTACAAGTTGGTGG
TCTGCATGAATTTCTTCGTACTTTTTGCACTGTGCATCTGCAGTGGCTTC
TTCAGCAGCAGTAGCAGCAGCAGCAGCAGTCAGATGGGCAATTATAAAGG
TCCTGTCGGCAACAGCAAATCTTACCAGCCGTACATGGACTACCAAACAA
AAACTACCACTATGCGACCTTCTTCCTCGTCACCCGCGGCAGCACGGGGG
CGGCTTCGTGGCCTGTCTCGTAGGGATAAGGGGGAGACACTGCACAAAGC
GTCAAGTTTGCACACTTATTCCTCATCGTCCTCACCGGGGGCAGCCACAC
ATGTGCCACAGAGCCCTCCGCGTCGTTTTGTTCCGGGTACGCTGCCACAG
GCTGAGGACAAGCCGGTTGTGGTCGCAACGAGTGCTGCAGCATCACCCCC
GCCGGCAGAGACAACCAGCATGCCCACGAAATCAACAACAGCAAGCAAGA
CAGGAACCAGCAACGGTTCGAGCAAGAAAAAGGCCTTGCTAAGCAATCTG
GTGTCCTCGACAAAACCTAACGCAGACTTGTTAATGACCATTGCGGAGGA
TGAAAGGGAAGACATACCTGCAGCCCCGGCCTCAGCGGCAGTGGTAGACA
CCTTGAAAGATACTTTCGATGCACGCTTCATGTCGATCCACACCGTAGGG
AACGCAGCCCCTGTGCAGTGTACATTCAGTGAGGCTCTTGAGGGAGAGAA
AGCCATGCCTTCCGTTCATGCCGACCTCGGACTTGGTGTCGAAGAGGGTG
GTGACCAGAACGTCAGGGCAGCATTTACAAACTCTGAAGAGAAGAGAGAG
ATAGCTGAAACCTGGAATGCATTTAAAGAAGCTGATGGAATCAACGTCGA
TCATTCTGTCGCCTCTTTATGCCCCCTCACGCCATCACGGTCAGAAGCTC
AGGAAGAGCCTGCTGTTGAGGTGGAGGAAGTGGGTGTGTCACCAAACTCT
CAAGTCATGGAAACTGAACAGTCGGGGCATACGGTAATGGCAATGGAGGC
AACAGAGAAGGAGTTAAAAGGGGAGCCAAGCCAGCAGATGGAAGAAAAGG
TGATTATGCAATTGCTGCACCGGCGCCATCCGCTTGACTTCATTCCCCCC
TTTGTCCGTGATGACATCGTTTGCATGAATACGCAGGGGGCTTAA
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Synonyms
Publications