NO01G05190.1, NO01G05190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05190.1
Unique NameNO01G05190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2351
Alignment locationchr1:1377910..1380484 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1377910..1380484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G05190.1 vs.
Match: XP_009039989.1 (hypothetical protein AURANDRAFT_66529 [Aureococcus anophagefferens]; EGB05341.1 hypothetical protein AURANDRAFT_66529 [Aureococcus anophagefferens])

HSP 1 Score: 190.7 bits (483), Expect = 1.300e-44
Identity = 158/520 (30.38%), Postives = 224/520 (43.08%), Query Frame = 0 
Query:    4 LDIAVIGSGPCALAFVSRLAAPPGAIDFSADFLYGFDSETESLQTTIGRLNALKKSMSTSSNDHPLQGRVKVFEKSGAWLGKWDGLFDALGIQHLRSPHVAHPCPTHTHA-------------ILALAEMTKTVPGSKCEREIFADF---KHLRYSGCHRAPSVRLFRSLCSHLCKSLG-LDSLLEEATVLAIEPVYKDEKTGQAVSHFRVTLCRGREAQGLVEVIEATSVVVATGSTSCPRLPEWWPSGPDAMDCPSDHSPHALRHAWELPQDLCLSSPAPAPLQSHERILIVGGGLTAVQLAVLAVDQGQAHATLASRRALVVKQFDFANAWMDRKHRPSLLRTFL-QADNDTDRLALIQAARGLSSIPPEALDMLRAREGSIDLREATEITSFPPPRWDSHLKMWRVVLERHIGTPAVMKGRITSREEHFFDRIWCATGSDVCLEKHPLLGGFVDQRPIDTCNGFPCLTPDLAWDQDCELYVLGAPAALRLGPDAFNLLGARTGAARVAHVLHKRLQ 506
            L++ ++G+GP ALA + RL     A D S DF  G  S   S + +    + L+K          +  RV+V + SGAWLG WD  F AL I HLRS +  HPCP  + A             ++ L    +T   S  +     D    K   + G  R PS +LFR    HL      +   + E  V         ++  +   H    L R R A G  E + A  VV+A G  +  RLP+W   G  A             HAW++        P    +++ +R+ +VGGGLT+  L  +A  +G     LA RR L V Q+D   AW+  + RP  +  FL +     DRLA+++AAR   S+ PEA   L  R G+  + +   +        D   +         +G                FD++W ATG    +   PL    +  RP+    G+P L   L WD D  +YV+GA AAL LGPDA NL G R  + R A V    L+
Sbjct:   54 LELVIVGAGPHALALLLRLL--DDAPDESGDFFVGLGSAPRSSRKS---WSDLEKRRCGDDVARRILDRVRVVDGSGAWLGTWDAQFAALEIPHLRSTYDQHPCPYDSFALQQFVVKNGRERDVVDLDASVRTTQESGGDDGCDCDAPKGKGCGFKGNFRLPSTKLFRDFVDHLIDQYPRVRGCVTEGVV---------DRVDRLDGH----LARVRLATG--ETLVARRVVLAVGPAAAARLPDWAAPGLGA-------------HAWDVVAAAARGEPV---VEAGDRVAVVGGGLTSAHLCFVAERRGAKPTLLARRRTLRVSQYDLDLAWLGWRTRPGKIARFLSKRAAPEDRLAMLRAARRGGSVSPEARRGL-DRGGTAVVADVDVVYG----EVDGGARYLDTAEGDRLGP---------------FDKVWYATGGAPGVAASPLFARLLADRPVAVVGGYPVLHASLRWDADTPVYVVGAAAALALGPDALNLAGTRMSSCRAASVFRDSLR 517
The following BLAST results are available for this feature:
BLAST of NO01G05190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_009039989.11.300e-4430.38hypothetical protein AURANDRAFT_66529 [Aureococcus... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05190NO01G05190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05190.1NO01G05190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05190.1.cds1NO01G05190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05190.1.cds2NO01G05190.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05190.1.cds3NO01G05190.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05190.1 ID=NO01G05190.1|Name=NO01G05190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2351bp
AGAACAACAGCTCCTTGTTCCGTTCCCAAATGCACGGGCAGTGTACAGGC
GCGAATGTTTCAATCGCTAGGTAAATGCGGCCACCACTGTAAAAGTCATA
ATTAATTCCCTCGAGGGCAAGAGGAGATATCGTTCGTCCTTGTCTTGTCT
TGTCTTTTTATCACACACGCTACATTACCTCCCCTCCCCTCCCTCCTCTT
CTACGCACCATCGCCACGCACAGAGCCCTGACAAATATTTTACTTTGATT
TTAAAGGAGATAGACCCACAAATTGTCATGCCTCGCCTAGATATTGCTGT
CATTGGCTCTGGCCCCTGTGCTCTCGCGTTCGTGAGTCGCTTGGCCGCGC
CACCTGGTGCCATCGACTTTTCAGCCGACTTCCTTTACGGTTTTGACTCA
GAGACCGAATCACTGCAGACCACCATCGGCCGCCTCAATGCCCTCAAGAA
AAGCATGAGCACATCCAGCAACGATCATCCCCTCCAGGGTCGTGTCAAAG
TCTTTGAGAAGAGCGGCGCATGGTTGGGGAAGTGGGATGGCTTGTTTGAC
GCCTTGGGAATTCAGCACCTCCGCTCTCCCCACGTGGCCCACCCTTGCCC
GACCCACACGCACGCCATCCTTGCACTTGCAGAGATGACCAAGACGGTAC
CAGGAAGTAAATGTGAGCGGGAGATCTTCGCAGATTTTAAGCACCTGCGA
TATAGTGGTTGCCACCGTGCTCCTTCGGTGCGACTCTTTCGCTCCCTGTG
TTCGCACCTGTGCAAATCCTTGGGCCTCGACTCTCTGCTTGAAGAAGCCA
CTGTTCTTGCCATCGAGCCAGTCTACAAGGACGAGAAGACCGGCCAAGCC
GTGAGCCACTTTCGAGTGACGCTGTGCCGCGGCCGCGAGGCACAAGGACT
GGTGGAAGTCATCGAAGCCACGTCTGTAGTGGTAGCTACGGGAAGCACGA
GCTGCCCCCGCCTTCCCGAGTGGTGGCCCTCCGGCCCGGATGCCATGGAC
TGCCCCTCCGATCATTCCCCACACGCTCTGCGTCATGCTTGGGAGCTGCC
GCAAGATTTGTGCCTTTCATCTCCTGCGCCTGCTCCTCTGCAATCCCACG
AACGCATCCTGATTGTCGGAGGAGGGTTAACGGCAGTGCAGCTTGCCGTG
TTGGCCGTCGATCAGGGTCAAGCTCACGCCACCTTAGCTTCTCGTCGCGC
CCTGGTCGTCAAGCAATTCGACTTTGCCAATGCCTGGATGGACCGCAAAC
ACCGTCCAAGCCTTCTTCGAACATTTCTCCAAGCCGATAATGATACCGAC
CGACTGGCGCTCATCCAGGCGGCTCGAGGTCTGTCTTCCATTCCGCCTGA
GGCCTTGGACATGCTACGCGCACGTGAGGGCAGCATCGACCTGCGTGAAG
CCACGGAGATCACGTCTTTCCCACCGCCGCGGTGGGATTCCCATTTAAAG
ATGTGGAGAGTTGTTCTCGAGCGTCATATTGGAACGCCCGCGGTGATGAA
AGGCAGGATCACATCCCGGGAAGAGCACTTCTTCGATCGCATCTGGTGCG
CCACGGGCAGCGACGTATGCTTGGAAAAGCATCCATTGCTGGGCGGCTTC
GTTGATCAACGACCCATCGATACTTGCAATGGATTCCCTTGTCTGACACC
GGACCTGGCTTGGGATCAGGATTGTGAACTGTACGTTTTGGGTGCTCCTG
CGGCCTTGCGTCTCGGCCCTGACGCCTTCAACCTCTTGGGGGCGCGCACA
GGCGCGGCGCGGGTCGCCCACGTCCTCCATAAGCGCCTCCAAATAGGGGA
GGAGACTACCATCATGAAAAGTATCCAGCAGGCAAAGCAGGAAGTGGCGG
CTTTGGGTTTCAAGTACGACCGCAAACGCGAGGCGGTCCGGAGCGCCGGG
CTTGCGCGGCAGGAGGAGACAGGAATGGGGATGCAGAAGAGATCAAAGAG
GGGTGTGTGTGCAAGGAAAGGCAAGCCGCAACGAGGTTGTTGTTGAGCTG
TGAGCAATAAGGTCGAATGTAAAGTGTGGACTATTTATGACTCAAAAACA
ATAGTGCTGGCGGAGAGTGCCTTCCAAAACCTCCGGCCCATTTTTCAAAA
AGTAATTCTATCGGGGACTTTGCACCAGAAACTTGGAAAAATAAGGGAAG
AATATGCAAGAATTCATAATTGGAAGGCTTTCCCCCGTGTATGATCCTAA
GAGGAGATATGCTTGTGCTCTGGTAGGTAGCATTTGTCTGCGGATTAGGT
CGCACATTATAATTTTAGAATCGTAGGAAACTACAGGAAAAATAATTATC
GAGAAGTGAAGCAGGTTTTTGGCCTGCAACACACACGAAAAAAACATGTC
G
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protein sequence of NO01G05190.1

>NO01G05190.1-protein ID=NO01G05190.1-protein|Name=NO01G05190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=573bp
MPRLDIAVIGSGPCALAFVSRLAAPPGAIDFSADFLYGFDSETESLQTTI
GRLNALKKSMSTSSNDHPLQGRVKVFEKSGAWLGKWDGLFDALGIQHLRS
PHVAHPCPTHTHAILALAEMTKTVPGSKCEREIFADFKHLRYSGCHRAPS
VRLFRSLCSHLCKSLGLDSLLEEATVLAIEPVYKDEKTGQAVSHFRVTLC
RGREAQGLVEVIEATSVVVATGSTSCPRLPEWWPSGPDAMDCPSDHSPHA
LRHAWELPQDLCLSSPAPAPLQSHERILIVGGGLTAVQLAVLAVDQGQAH
ATLASRRALVVKQFDFANAWMDRKHRPSLLRTFLQADNDTDRLALIQAAR
GLSSIPPEALDMLRAREGSIDLREATEITSFPPPRWDSHLKMWRVVLERH
IGTPAVMKGRITSREEHFFDRIWCATGSDVCLEKHPLLGGFVDQRPIDTC
NGFPCLTPDLAWDQDCELYVLGAPAALRLGPDAFNLLGARTGAARVAHVL
HKRLQIGEETTIMKSIQQAKQEVAALGFKYDRKREAVRSAGLARQEETGM
GMQKRSKRGVCARKGKPQRGCC*
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mRNA from alignment at chr1:1377910..1380484-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05190.1 ID=NO01G05190.1|Name=NO01G05190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2575bp|location=Sequence derived from alignment at chr1:1377910..1380484- (Nannochloropsis oceanica)
AGAACAACAGCTCCTTGTTCCGTTCCCAAATGCACGGGCAGTGTACAGGC
GCGAATGTTTCAATCGCTAGGTAAATGCGGCCACCACTGTAAAAGTCATA
ATTAATTCCCTCGAGGGCAAGAGGAGATATCGTTCGTCCTTGTCTTGTCT
TGTCTTTTTATCACACACGCTACATTACCTCCCCTCCCCTCCCTCCTCTT
CTACGCACCATCGCCACGCACAGAGCCCTGACAAATATTTTACTTTGATT
TTAAAGGAGATAGACCCACAAATTGTCATGCCTCGCCTAGATATTGCTGT
CATTGGCTCTGGCCCCTGTGCTCTCGCGTTCGTGAGTCGCTTGGCCGCGC
CACCTGGTGCCATCGACTTTTCAGCCGACTTCCTTTACGGTTTTGACTCA
GAGACCGAATCACTGCAGACCACCATCGGCCGCCTCAATGCCCTCAAGAA
AAGCATGAGCACATCCAGCAACGATCATCCCCTCCAGGGTCGTGTCAAAG
TCTTTGAGAAGAGCGGCGCATGGTTGGGGAAGTGGGATGGCTTGTTTGAC
GCCTTGGGAATTCAGCACCTCCGCTCTCCCCACGTGGCCCACCCTTGCCC
GACCCACACGCACGCCATCCTTGCACTTGCAGAGATGACCAAGACGGTAC
CAGGAAGTAAATGTGAGCGGGAGATCTTCGCAGATTTTAAGCACCTGCGA
TATAGTGGTTGCCACCGTGCTCCTTCGGTGCGACTCTTTCGCTCCCTGTG
TTCGCACCTGTGCAAATCCTTGGGCCTCGACTCTCTGCTTGAAGAAGGTA
TGGAACAAATTGAACAGATTTTGACTTGGTTTCATTAATATTCGACCTCA
TTTACATATTGATTATTTCTTCCCCCAAAGCCACTGTTCTTGCCATCGAG
CCAGTCTACAAGGACGAGAAGACCGGCCAAGCCGTGAGCCACTTTCGAGT
GACGCTGTGCCGCGGCCGCGAGGCACAAGGACTGGTGGAAGTCATCGAAG
CCACGTAAGTATGTGTCGGTGTGATAGAGATAAAAAGACGTGCACCGGGG
AAAAGAGGCCGGGACCCTCCCTCCCTCCCTCATTCCTTCCCCTCGCCCCA
AACCTAACAAACCTTACACAATCTTTTTTTTCTTCATGATTGCAGGTCTG
TAGTGGTAGCTACGGGAAGCACGAGCTGCCCCCGCCTTCCCGAGTGGTGG
CCCTCCGGCCCGGATGCCATGGACTGCCCCTCCGATCATTCCCCACACGC
TCTGCGTCATGCTTGGGAGCTGCCGCAAGATTTGTGCCTTTCATCTCCTG
CGCCTGCTCCTCTGCAATCCCACGAACGCATCCTGATTGTCGGAGGAGGG
TTAACGGCAGTGCAGCTTGCCGTGTTGGCCGTCGATCAGGGTCAAGCTCA
CGCCACCTTAGCTTCTCGTCGCGCCCTGGTCGTCAAGCAATTCGACTTTG
CCAATGCCTGGATGGACCGCAAACACCGTCCAAGCCTTCTTCGAACATTT
CTCCAAGCCGATAATGATACCGACCGACTGGCGCTCATCCAGGCGGCTCG
AGGTCTGTCTTCCATTCCGCCTGAGGCCTTGGACATGCTACGCGCACGTG
AGGGCAGCATCGACCTGCGTGAAGCCACGGAGATCACGTCTTTCCCACCG
CCGCGGTGGGATTCCCATTTAAAGATGTGGAGAGTTGTTCTCGAGCGTCA
TATTGGAACGCCCGCGGTGATGAAAGGCAGGATCACATCCCGGGAAGAGC
ACTTCTTCGATCGCATCTGGTGCGCCACGGGCAGCGACGTATGCTTGGAA
AAGCATCCATTGCTGGGCGGCTTCGTTGATCAACGACCCATCGATACTTG
CAATGGATTCCCTTGTCTGACACCGGACCTGGCTTGGGATCAGGATTGTG
AACTGTACGTTTTGGGTGCTCCTGCGGCCTTGCGTCTCGGCCCTGACGCC
TTCAACCTCTTGGGGGCGCGCACAGGCGCGGCGCGGGTCGCCCACGTCCT
CCATAAGCGCCTCCAAATAGGGGAGGAGACTACCATCATGAAAAGTATCC
AGCAGGCAAAGCAGGAAGTGGCGGCTTTGGGTTTCAAGTACGACCGCAAA
CGCGAGGCGGTCCGGAGCGCCGGGCTTGCGCGGCAGGAGGAGACAGGAAT
GGGGATGCAGAAGAGATCAAAGAGGGGTGTGTGTGCAAGGAAAGGCAAGC
CGCAACGAGGTTGTTGTTGAGCTGTGAGCAATAAGGTCGAATGTAAAGTG
TGGACTATTTATGACTCAAAAACAATAGTGCTGGCGGAGAGTGCCTTCCA
AAACCTCCGGCCCATTTTTCAAAAAGTAATTCTATCGGGGACTTTGCACC
AGAAACTTGGAAAAATAAGGGAAGAATATGCAAGAATTCATAATTGGAAG
GCTTTCCCCCGTGTATGATCCTAAGAGGAGATATGCTTGTGCTCTGGTAG
GTAGCATTTGTCTGCGGATTAGGTCGCACATTATAATTTTAGAATCGTAG
GAAACTACAGGAAAAATAATTATCGAGAAGTGAAGCAGGTTTTTGGCCTG
CAACACACACGAAAAAAACATGTCG
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Coding sequence (CDS) from alignment at chr1:1377910..1380484-

>NO01G05190.1 ID=NO01G05190.1|Name=NO01G05190.1|organism=Nannochloropsis oceanica|type=CDS|length=1719bp|location=Sequence derived from alignment at chr1:1377910..1380484- (Nannochloropsis oceanica)
ATGCCTCGCCTAGATATTGCTGTCATTGGCTCTGGCCCCTGTGCTCTCGC
GTTCGTGAGTCGCTTGGCCGCGCCACCTGGTGCCATCGACTTTTCAGCCG
ACTTCCTTTACGGTTTTGACTCAGAGACCGAATCACTGCAGACCACCATC
GGCCGCCTCAATGCCCTCAAGAAAAGCATGAGCACATCCAGCAACGATCA
TCCCCTCCAGGGTCGTGTCAAAGTCTTTGAGAAGAGCGGCGCATGGTTGG
GGAAGTGGGATGGCTTGTTTGACGCCTTGGGAATTCAGCACCTCCGCTCT
CCCCACGTGGCCCACCCTTGCCCGACCCACACGCACGCCATCCTTGCACT
TGCAGAGATGACCAAGACGGTACCAGGAAGTAAATGTGAGCGGGAGATCT
TCGCAGATTTTAAGCACCTGCGATATAGTGGTTGCCACCGTGCTCCTTCG
GTGCGACTCTTTCGCTCCCTGTGTTCGCACCTGTGCAAATCCTTGGGCCT
CGACTCTCTGCTTGAAGAAGCCACTGTTCTTGCCATCGAGCCAGTCTACA
AGGACGAGAAGACCGGCCAAGCCGTGAGCCACTTTCGAGTGACGCTGTGC
CGCGGCCGCGAGGCACAAGGACTGGTGGAAGTCATCGAAGCCACGTCTGT
AGTGGTAGCTACGGGAAGCACGAGCTGCCCCCGCCTTCCCGAGTGGTGGC
CCTCCGGCCCGGATGCCATGGACTGCCCCTCCGATCATTCCCCACACGCT
CTGCGTCATGCTTGGGAGCTGCCGCAAGATTTGTGCCTTTCATCTCCTGC
GCCTGCTCCTCTGCAATCCCACGAACGCATCCTGATTGTCGGAGGAGGGT
TAACGGCAGTGCAGCTTGCCGTGTTGGCCGTCGATCAGGGTCAAGCTCAC
GCCACCTTAGCTTCTCGTCGCGCCCTGGTCGTCAAGCAATTCGACTTTGC
CAATGCCTGGATGGACCGCAAACACCGTCCAAGCCTTCTTCGAACATTTC
TCCAAGCCGATAATGATACCGACCGACTGGCGCTCATCCAGGCGGCTCGA
GGTCTGTCTTCCATTCCGCCTGAGGCCTTGGACATGCTACGCGCACGTGA
GGGCAGCATCGACCTGCGTGAAGCCACGGAGATCACGTCTTTCCCACCGC
CGCGGTGGGATTCCCATTTAAAGATGTGGAGAGTTGTTCTCGAGCGTCAT
ATTGGAACGCCCGCGGTGATGAAAGGCAGGATCACATCCCGGGAAGAGCA
CTTCTTCGATCGCATCTGGTGCGCCACGGGCAGCGACGTATGCTTGGAAA
AGCATCCATTGCTGGGCGGCTTCGTTGATCAACGACCCATCGATACTTGC
AATGGATTCCCTTGTCTGACACCGGACCTGGCTTGGGATCAGGATTGTGA
ACTGTACGTTTTGGGTGCTCCTGCGGCCTTGCGTCTCGGCCCTGACGCCT
TCAACCTCTTGGGGGCGCGCACAGGCGCGGCGCGGGTCGCCCACGTCCTC
CATAAGCGCCTCCAAATAGGGGAGGAGACTACCATCATGAAAAGTATCCA
GCAGGCAAAGCAGGAAGTGGCGGCTTTGGGTTTCAAGTACGACCGCAAAC
GCGAGGCGGTCCGGAGCGCCGGGCTTGCGCGGCAGGAGGAGACAGGAATG
GGGATGCAGAAGAGATCAAAGAGGGGTGTGTGTGCAAGGAAAGGCAAGCC
GCAACGAGGTTGTTGTTGA
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Synonyms
Publications