NO01G05180.1, NO01G05180.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05180.1
Unique NameNO01G05180.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1839
Alignment locationchr1:1375145..1376983 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1375145..1376983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G05180.1 vs.
Match: EWM29456.1 (hypothetical protein Naga_100083g17 [Nannochloropsis gaditana])

HSP 1 Score: 830.1 bits (2143), Expect = 4.500e-237
Identity = 426/620 (68.71%), Postives = 496/620 (80.00%), Query Frame = 0 
Query:    1 MNKDWNGLAKSGGLEKLKVGELKGFLKDHGISQTGEKGTLMFRIKAFLDGERLKIDGLNPALLKAGELKKECAKRGLSPMGYPDELLESLIGYLKTHGSRD-STAAASGERPSAQEKTGAESGENEEEGNKGGNATLALIQRIVELGEEDDWGGILGLGATGQKLTKQSPTADLRKAYHRLSLLVHPDRVGPGMGDATRAFQSVVTAFERLSEPELEEEEGKKDAKAGKKKEKGKTLARSNENCFRTRVYCPRCKTEWGQSIDGLPPYTYNYMMMGLKTFVCSTCLCDFGALTAIHKCPHCRRSFEYDPHDYHREITCGNKNCGKPFGFYLFQVSDRVENELKAELKAEQERRIRARESKMARLARSKRKH--AEKDNEEREREDRRLKLRLFVQGLVDDCPQCGEEPGCAPEDREAHKEHLRQCQDKDKISKHQKKIRMEEARQAEKEARTTAQEDMQSLRTWEFLGGNEGELWLLTDGQLERKCREKGLLPKEE-------EMKGAGTWKRKKSTRPMSKDEMIAQLVQHANKRAALRLTDGTEKGAAGVKKCRKGGNTMTRESLPDNLYSVSLSQLRSVCAAHGYVPQATTQSGLVREMERVVAKAEGHEETLLLED 611
            M+K+WN LAK GGLEKLKVGELKGFLK++G+SQTGEKGTLMFRIKAFLDGE +KIDG NPA +KAGELKKECAKRGLSPMGYPDELLESLI YLKTHG  D +T AA G    + +KT    G+ E+     G+   AL+ RI++LGEE+DW  IL LG TG K+++QSPTA LRK YHRLSL VHPDR+G  + +AT+AFQ+VVTAFERLSEPE EEE+G K    GK   K KTLARSNENCFR+R+YCPRC+TEWGQ IDGLPPYTYNYMMMGLKTFVCSTCLCDFGALTA+HKCPHCRRSFEYDPHDYHR++ CGNK C KPFGF+LF VSDRVE E++ EL+AEQERR+RARESK+ARLARSKRK    EK   E+  +DRRL+LRLFVQGL+D CP+CGEE  C PEDREAHK+HLR C DKDKI  H++K+R  EA QA+KEA+   QED+QSLRTWEFLGGNEGELWLLTDGQL   C+EK LLPKEE       + KG+G   +K +   +SKDEMIA+LV  + +   LRLTDGTE G    ++C +     +R+SLPDNL+ +SL QLR+VCAAH YVPQAT+Q+ LVRE+ER  AK EGHEETLLLED
Sbjct:    1 MSKNWNVLAKGGGLEKLKVGELKGFLKENGLSQTGEKGTLMFRIKAFLDGEGMKIDGRNPATMKAGELKKECAKRGLSPMGYPDELLESLINYLKTHGGADKATNAAPGIDQKSTDKT---LGKAEDNIGDDGDVASALVHRIMQLGEEEDWAAILNLGCTGLKVSRQSPTALLRKCYHRLSLNVHPDRLGGSVPEATKAFQAVVTAFERLSEPEREEEQGNKK---GKATTKTKTLARSNENCFRSRIYCPRCRTEWGQPIDGLPPYTYNYMMMGLKTFVCSTCLCDFGALTALHKCPHCRRSFEYDPHDYHRQVVCGNKGCTKPFGFFLFPVSDRVEKEMRGELRAEQERRLRARESKLARLARSKRKREGMEKGEGEQAADDRRLQLRLFVQGLLDACPRCGEEVACKPEDREAHKDHLRDCHDKDKIEAHREKVRKAEAHQADKEAKRAQQEDLQSLRTWEFLGGNEGELWLLTDGQLAHLCKEKALLPKEEIDEMGMGDKKGSGA--KKTTAAALSKDEMIAKLVAQSKREGPLRLTDGTESGDI-KRECGEPNTRFSRDSLPDNLHGMSLLQLRAVCAAHAYVPQATSQAALVRELERAAAKVEGHEETLLLED 611
The following BLAST results are available for this feature:
BLAST of NO01G05180.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29456.14.500e-23768.71hypothetical protein Naga_100083g17 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05180NO01G05180Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05180.1NO01G05180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05180.1.cds1NO01G05180.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05180.1 ID=NO01G05180.1|Name=NO01G05180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1839bp
ATGAACAAGGACTGGAATGGCCTGGCCAAGTCAGGTGGCCTGGAGAAGCT
CAAGGTGGGCGAGCTCAAGGGCTTTTTGAAGGACCATGGTATTTCTCAAA
CAGGGGAGAAAGGAACACTTATGTTCCGCATAAAGGCGTTTTTGGACGGG
GAGCGTCTGAAGATAGACGGCCTCAACCCCGCCTTGCTCAAGGCAGGTGA
GCTGAAGAAGGAGTGTGCGAAGCGCGGGCTCTCGCCAATGGGTTACCCAG
ACGAACTGCTCGAGAGTCTAATCGGCTACCTCAAGACACACGGTAGCAGG
GACAGTACTGCTGCTGCTAGTGGTGAGAGACCCAGCGCCCAGGAGAAAAC
GGGTGCAGAAAGTGGGGAAAACGAGGAGGAGGGCAATAAAGGTGGTAATG
CAACTTTAGCTTTGATCCAACGCATTGTGGAGCTGGGGGAGGAGGACGAC
TGGGGTGGGATCCTAGGCTTGGGTGCGACTGGGCAGAAGCTGACGAAGCA
GAGCCCAACAGCCGATCTTCGCAAGGCTTACCACCGCCTTTCTCTTTTGG
TGCATCCAGATCGGGTAGGCCCGGGGATGGGGGATGCAACGCGTGCTTTC
CAGTCAGTGGTGACGGCTTTTGAGCGTTTATCGGAGCCTGAGCTGGAGGA
GGAGGAGGGGAAGAAGGATGCTAAGGCAGGGAAGAAGAAAGAGAAGGGCA
AGACTCTTGCACGGTCCAACGAGAATTGTTTCCGAACGCGGGTGTATTGT
CCTCGCTGCAAAACGGAGTGGGGTCAGTCTATTGATGGCCTGCCTCCCTA
CACCTACAACTATATGATGATGGGGCTGAAGACCTTCGTGTGCTCCACCT
GCCTCTGCGATTTCGGGGCACTCACCGCCATCCACAAATGTCCGCATTGC
CGCAGGTCCTTCGAGTACGATCCGCACGACTATCACCGGGAGATCACTTG
TGGGAATAAAAATTGTGGGAAGCCTTTTGGCTTTTACCTCTTTCAAGTCT
CGGATCGCGTCGAGAATGAACTCAAGGCGGAGCTCAAGGCGGAGCAGGAA
CGACGGATCAGAGCGCGAGAGAGTAAGATGGCACGGTTGGCGCGGTCGAA
GCGGAAGCATGCGGAAAAAGATAATGAGGAGAGAGAGCGCGAGGATAGGC
GGTTAAAACTTCGCTTGTTTGTACAGGGCTTGGTGGATGATTGTCCGCAG
TGTGGGGAGGAGCCAGGGTGTGCGCCTGAGGATCGAGAGGCACACAAGGA
GCATTTGAGGCAGTGTCAAGACAAGGACAAGATTTCCAAGCACCAGAAGA
AGATTCGGATGGAGGAGGCAAGGCAGGCGGAGAAGGAGGCAAGGACAACG
GCGCAGGAGGACATGCAGTCGTTGCGGACGTGGGAGTTCCTGGGAGGGAA
TGAGGGGGAGCTGTGGCTGTTGACTGATGGTCAGCTTGAACGCAAGTGCA
GGGAGAAAGGTTTACTGCCAAAGGAAGAGGAGATGAAGGGGGCAGGTACC
TGGAAGAGGAAGAAGAGCACTCGTCCTATGAGCAAGGACGAGATGATCGC
GCAGCTTGTACAGCACGCTAATAAGAGGGCAGCGCTTCGGCTCACGGATG
GGACAGAAAAGGGTGCCGCTGGTGTCAAGAAATGTAGGAAAGGAGGTAAC
ACCATGACTCGTGAATCTTTGCCGGACAACCTTTATAGTGTGTCCCTTTC
ACAGCTTCGGTCCGTGTGTGCGGCGCATGGGTACGTGCCTCAGGCGACCA
CGCAGAGCGGGTTGGTCCGGGAGATGGAGCGGGTAGTAGCCAAGGCAGAA
GGACATGAGGAGACATTGTTACTGGAAGACTTGAAGTGA
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protein sequence of NO01G05180.1

>NO01G05180.1-protein ID=NO01G05180.1-protein|Name=NO01G05180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=613bp
MNKDWNGLAKSGGLEKLKVGELKGFLKDHGISQTGEKGTLMFRIKAFLDG
ERLKIDGLNPALLKAGELKKECAKRGLSPMGYPDELLESLIGYLKTHGSR
DSTAAASGERPSAQEKTGAESGENEEEGNKGGNATLALIQRIVELGEEDD
WGGILGLGATGQKLTKQSPTADLRKAYHRLSLLVHPDRVGPGMGDATRAF
QSVVTAFERLSEPELEEEEGKKDAKAGKKKEKGKTLARSNENCFRTRVYC
PRCKTEWGQSIDGLPPYTYNYMMMGLKTFVCSTCLCDFGALTAIHKCPHC
RRSFEYDPHDYHREITCGNKNCGKPFGFYLFQVSDRVENELKAELKAEQE
RRIRARESKMARLARSKRKHAEKDNEEREREDRRLKLRLFVQGLVDDCPQ
CGEEPGCAPEDREAHKEHLRQCQDKDKISKHQKKIRMEEARQAEKEARTT
AQEDMQSLRTWEFLGGNEGELWLLTDGQLERKCREKGLLPKEEEMKGAGT
WKRKKSTRPMSKDEMIAQLVQHANKRAALRLTDGTEKGAAGVKKCRKGGN
TMTRESLPDNLYSVSLSQLRSVCAAHGYVPQATTQSGLVREMERVVAKAE
GHEETLLLEDLK*
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mRNA from alignment at chr1:1375145..1376983+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05180.1 ID=NO01G05180.1|Name=NO01G05180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1839bp|location=Sequence derived from alignment at chr1:1375145..1376983+ (Nannochloropsis oceanica)
ATGAACAAGGACTGGAATGGCCTGGCCAAGTCAGGTGGCCTGGAGAAGCT
CAAGGTGGGCGAGCTCAAGGGCTTTTTGAAGGACCATGGTATTTCTCAAA
CAGGGGAGAAAGGAACACTTATGTTCCGCATAAAGGCGTTTTTGGACGGG
GAGCGTCTGAAGATAGACGGCCTCAACCCCGCCTTGCTCAAGGCAGGTGA
GCTGAAGAAGGAGTGTGCGAAGCGCGGGCTCTCGCCAATGGGTTACCCAG
ACGAACTGCTCGAGAGTCTAATCGGCTACCTCAAGACACACGGTAGCAGG
GACAGTACTGCTGCTGCTAGTGGTGAGAGACCCAGCGCCCAGGAGAAAAC
GGGTGCAGAAAGTGGGGAAAACGAGGAGGAGGGCAATAAAGGTGGTAATG
CAACTTTAGCTTTGATCCAACGCATTGTGGAGCTGGGGGAGGAGGACGAC
TGGGGTGGGATCCTAGGCTTGGGTGCGACTGGGCAGAAGCTGACGAAGCA
GAGCCCAACAGCCGATCTTCGCAAGGCTTACCACCGCCTTTCTCTTTTGG
TGCATCCAGATCGGGTAGGCCCGGGGATGGGGGATGCAACGCGTGCTTTC
CAGTCAGTGGTGACGGCTTTTGAGCGTTTATCGGAGCCTGAGCTGGAGGA
GGAGGAGGGGAAGAAGGATGCTAAGGCAGGGAAGAAGAAAGAGAAGGGCA
AGACTCTTGCACGGTCCAACGAGAATTGTTTCCGAACGCGGGTGTATTGT
CCTCGCTGCAAAACGGAGTGGGGTCAGTCTATTGATGGCCTGCCTCCCTA
CACCTACAACTATATGATGATGGGGCTGAAGACCTTCGTGTGCTCCACCT
GCCTCTGCGATTTCGGGGCACTCACCGCCATCCACAAATGTCCGCATTGC
CGCAGGTCCTTCGAGTACGATCCGCACGACTATCACCGGGAGATCACTTG
TGGGAATAAAAATTGTGGGAAGCCTTTTGGCTTTTACCTCTTTCAAGTCT
CGGATCGCGTCGAGAATGAACTCAAGGCGGAGCTCAAGGCGGAGCAGGAA
CGACGGATCAGAGCGCGAGAGAGTAAGATGGCACGGTTGGCGCGGTCGAA
GCGGAAGCATGCGGAAAAAGATAATGAGGAGAGAGAGCGCGAGGATAGGC
GGTTAAAACTTCGCTTGTTTGTACAGGGCTTGGTGGATGATTGTCCGCAG
TGTGGGGAGGAGCCAGGGTGTGCGCCTGAGGATCGAGAGGCACACAAGGA
GCATTTGAGGCAGTGTCAAGACAAGGACAAGATTTCCAAGCACCAGAAGA
AGATTCGGATGGAGGAGGCAAGGCAGGCGGAGAAGGAGGCAAGGACAACG
GCGCAGGAGGACATGCAGTCGTTGCGGACGTGGGAGTTCCTGGGAGGGAA
TGAGGGGGAGCTGTGGCTGTTGACTGATGGTCAGCTTGAACGCAAGTGCA
GGGAGAAAGGTTTACTGCCAAAGGAAGAGGAGATGAAGGGGGCAGGTACC
TGGAAGAGGAAGAAGAGCACTCGTCCTATGAGCAAGGACGAGATGATCGC
GCAGCTTGTACAGCACGCTAATAAGAGGGCAGCGCTTCGGCTCACGGATG
GGACAGAAAAGGGTGCCGCTGGTGTCAAGAAATGTAGGAAAGGAGGTAAC
ACCATGACTCGTGAATCTTTGCCGGACAACCTTTATAGTGTGTCCCTTTC
ACAGCTTCGGTCCGTGTGTGCGGCGCATGGGTACGTGCCTCAGGCGACCA
CGCAGAGCGGGTTGGTCCGGGAGATGGAGCGGGTAGTAGCCAAGGCAGAA
GGACATGAGGAGACATTGTTACTGGAAGACTTGAAGTGA
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Coding sequence (CDS) from alignment at chr1:1375145..1376983+

>NO01G05180.1 ID=NO01G05180.1|Name=NO01G05180.1|organism=Nannochloropsis oceanica|type=CDS|length=1839bp|location=Sequence derived from alignment at chr1:1375145..1376983+ (Nannochloropsis oceanica)
ATGAACAAGGACTGGAATGGCCTGGCCAAGTCAGGTGGCCTGGAGAAGCT
CAAGGTGGGCGAGCTCAAGGGCTTTTTGAAGGACCATGGTATTTCTCAAA
CAGGGGAGAAAGGAACACTTATGTTCCGCATAAAGGCGTTTTTGGACGGG
GAGCGTCTGAAGATAGACGGCCTCAACCCCGCCTTGCTCAAGGCAGGTGA
GCTGAAGAAGGAGTGTGCGAAGCGCGGGCTCTCGCCAATGGGTTACCCAG
ACGAACTGCTCGAGAGTCTAATCGGCTACCTCAAGACACACGGTAGCAGG
GACAGTACTGCTGCTGCTAGTGGTGAGAGACCCAGCGCCCAGGAGAAAAC
GGGTGCAGAAAGTGGGGAAAACGAGGAGGAGGGCAATAAAGGTGGTAATG
CAACTTTAGCTTTGATCCAACGCATTGTGGAGCTGGGGGAGGAGGACGAC
TGGGGTGGGATCCTAGGCTTGGGTGCGACTGGGCAGAAGCTGACGAAGCA
GAGCCCAACAGCCGATCTTCGCAAGGCTTACCACCGCCTTTCTCTTTTGG
TGCATCCAGATCGGGTAGGCCCGGGGATGGGGGATGCAACGCGTGCTTTC
CAGTCAGTGGTGACGGCTTTTGAGCGTTTATCGGAGCCTGAGCTGGAGGA
GGAGGAGGGGAAGAAGGATGCTAAGGCAGGGAAGAAGAAAGAGAAGGGCA
AGACTCTTGCACGGTCCAACGAGAATTGTTTCCGAACGCGGGTGTATTGT
CCTCGCTGCAAAACGGAGTGGGGTCAGTCTATTGATGGCCTGCCTCCCTA
CACCTACAACTATATGATGATGGGGCTGAAGACCTTCGTGTGCTCCACCT
GCCTCTGCGATTTCGGGGCACTCACCGCCATCCACAAATGTCCGCATTGC
CGCAGGTCCTTCGAGTACGATCCGCACGACTATCACCGGGAGATCACTTG
TGGGAATAAAAATTGTGGGAAGCCTTTTGGCTTTTACCTCTTTCAAGTCT
CGGATCGCGTCGAGAATGAACTCAAGGCGGAGCTCAAGGCGGAGCAGGAA
CGACGGATCAGAGCGCGAGAGAGTAAGATGGCACGGTTGGCGCGGTCGAA
GCGGAAGCATGCGGAAAAAGATAATGAGGAGAGAGAGCGCGAGGATAGGC
GGTTAAAACTTCGCTTGTTTGTACAGGGCTTGGTGGATGATTGTCCGCAG
TGTGGGGAGGAGCCAGGGTGTGCGCCTGAGGATCGAGAGGCACACAAGGA
GCATTTGAGGCAGTGTCAAGACAAGGACAAGATTTCCAAGCACCAGAAGA
AGATTCGGATGGAGGAGGCAAGGCAGGCGGAGAAGGAGGCAAGGACAACG
GCGCAGGAGGACATGCAGTCGTTGCGGACGTGGGAGTTCCTGGGAGGGAA
TGAGGGGGAGCTGTGGCTGTTGACTGATGGTCAGCTTGAACGCAAGTGCA
GGGAGAAAGGTTTACTGCCAAAGGAAGAGGAGATGAAGGGGGCAGGTACC
TGGAAGAGGAAGAAGAGCACTCGTCCTATGAGCAAGGACGAGATGATCGC
GCAGCTTGTACAGCACGCTAATAAGAGGGCAGCGCTTCGGCTCACGGATG
GGACAGAAAAGGGTGCCGCTGGTGTCAAGAAATGTAGGAAAGGAGGTAAC
ACCATGACTCGTGAATCTTTGCCGGACAACCTTTATAGTGTGTCCCTTTC
ACAGCTTCGGTCCGTGTGTGCGGCGCATGGGTACGTGCCTCAGGCGACCA
CGCAGAGCGGGTTGGTCCGGGAGATGGAGCGGGTAGTAGCCAAGGCAGAA
GGACATGAGGAGACATTGTTACTGGAAGACTTGAAGTGA
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Synonyms
Publications