NO01G05120.1, NO01G05120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05120.1
Unique NameNO01G05120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1279
Alignment locationchr1:1361357..1363201 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1361357..1363201 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO01G05120.1 vs.
Match: EWM29451.1 (small ubiquitin-like modifier [Nannochloropsis gaditana])

HSP 1 Score: 142.1 bits (357), Expect = 1.000e-30
Identity = 77/93 (82.80%), Postives = 82/93 (88.17%), Query Frame = 0 
Query:    7 MATVKTD----EPKGESITLRVKDQTGEETMFKVKKTTKMEKVFNTYATRKGINSNALRFLLDGLRIEKHQTPEELDLEDEDQIDVMLEQLGG 96
            MATVKTD    EPK ESITLRVKDQTGEETMFKVKKTTKMEKVF +YA RKG+N ++LRFLLDG RIEKHQT  EL+LEDEDQIDVMLEQLGG
Sbjct:   22 MATVKTDTTATEPKSESITLRVKDQTGEETMFKVKKTTKMEKVFASYAGRKGVNVDSLRFLLDGQRIEKHQTSAELELEDEDQIDVMLEQLGG 114
The following BLAST results are available for this feature:
BLAST of NO01G05120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29451.11.000e-3082.80small ubiquitin-like modifier [Nannochloropsis gad... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05120NO01G05120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05120.1NO01G05120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05120.1.cds1NO01G05120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05120.1.cds2NO01G05120.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05120.1.cds3NO01G05120.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05120.1.cds4NO01G05120.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05120.1 ID=NO01G05120.1|Name=NO01G05120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1279bp
CTCCTTATGATCCCACCATTTTCATTTAAAACCGCATGTCCCACATTGCA
CACAAGGCCATCACCACCACGCGTCTTTCTGTATTGCCTTCTCTTTATGA
TTATGCGGTAGGCACGCTGCTTGGATCTTGCAAGCCTTGTCCGTCATATG
CAAGCACGGCTAGCACTTGGCTCATCATGCTTTTATGCCGTCACCTCCCT
CACCTTCCCCTCTTCTCTATGCACATCATCACGCACAGCGTAAGGCACAT
TTGGGTATCACCACCATCTCCAGCAATACTATCTCTACAATAACATACGG
CTATAGCAACGTGCGGACAGGGACGCAGCCAACAAATAAAATAACGACAA
AAACGTAGTCCTCAACCCTGACGAGGGTACATTACCGAGGCCGCGCGAAA
GAGTGAGAGCTCACGTTGGAAGTGAGAAGCAGGACGTGACGAAAGTAGTA
GAGCTGGACCGTGCAAAAGGCCGGCAACAATGCCTCGCTCTCTGCGCATG
TAATGCATGTTTCAAATACCTACATTGCGTCTTCGAAACGCCGCCTTTCC
CCTTCACGAGTAGGGGAAGAAAGGGCAAACAAATCATTCAGGCCGAGAGA
GATGAGAAGAGACTCGATCGAGGACTGAGAGACGAAAAAGCACGCATTTA
AAAGCAACTAGGCCTTGCTCAAATGCTTCTACAATCCTTCTCTTCATCCT
CTAACCCCTCCCTTCCTCCCTCCCCTTAACTCACATTCAACAGCCAGCCA
CCACACCACCACAAGGACAGCAGCAGCAGGAGCAGAAGCAGCAGCAGTAC
CAATGACATCACCAGCAGCAATGGCTACCGTAAAGACAGACGAGCCCAAG
GGAGAGAGTATCACTTTGCGAGTCAAGGACCAGACGGGAGAGGAGACAAT
GTTCAAGGTGAAGAAGACAACTAAGATGGAGAAAGTCTTCAACACATATG
CCACACGCAAGGGCATCAACTCCAATGCTCTCCGTTTCCTCCTCGACGGG
CTGCGAATCGAGAAACATCAAACGCCTGAAGAGCTGGACCTGGAAGACGA
GGATCAGATCGACGTCATGCTGGAGCAGCTTGGGGGGCATCGATTACGGT
CACAAAACCATTTAGCTGTACAAGAAAAGAATGAGAAATGAAGAAGAGAC
AGAAAGAGGGAGAGGGAGAGGGAGAAAGAGAAAAAGAAGAGAGATAGGAG
GGGGAGAGCGGCCTGGATTAGAAAACGAGGAAAGATGAAAGAGAAAATCA
AAGCAAATCTCACTCTTGACCACCAAGAC
back to top

protein sequence of NO01G05120.1

>NO01G05120.1-protein ID=NO01G05120.1-protein|Name=NO01G05120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=113bp
MTSPAAMATVKTDEPKGESITLRVKDQTGEETMFKVKKTTKMEKVFNTYA
TRKGINSNALRFLLDGLRIEKHQTPEELDLEDEDQIDVMLEQLGGHRLRS
QNHLAVQEKNEK*
back to top

mRNA from alignment at chr1:1361357..1363201+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05120.1 ID=NO01G05120.1|Name=NO01G05120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1845bp|location=Sequence derived from alignment at chr1:1361357..1363201+ (Nannochloropsis oceanica)
CTCCTTATGATCCCACCATTTTCATTTAAAACCGCATGTCCCACATTGCA
CACAAGGCCATCACCACCACGCGTCTTTCTGTATTGCCTTCTCTTTATGA
TTATGCGGTAGGCACGCTGCTTGGATCTTGCAAGCCTTGTCCGTCATATG
CAAGCACGGCTAGCACTTGGCTCATCATGCTTTTATGCCGTCACCTCCCT
CACCTTCCCCTCTTCTCTATGCACATCATCACGCACAGCGTAAGGCACAT
TTGGGTATCACCACCATCTCCAGCAATACTATCTCTACAATAACATACGG
CTATAGCAACGTGCGGACAGGGACGCAGCCAACAAATAAAATAACGACAA
AAACGTAGTCCTCAACCCTGACGAGGGTACATTACCGAGGCCGCGCGAAA
GAGTGAGAGCTCACGTTGGAAGTGAGAAGCAGGACGTGACGAAAGTAGTA
GAGCTGGACCGTGCAAAAGGCCGGCAACAATGCCTCGCTCTCTGCGCATG
TAATGCATGTTTCAAATACCTACATTGCGTCTTCGAAACGCCGCCTTTCC
CCTTCACGAGTAGGGGAAGAAAGGGCAAACAAATCATTCAGGCCGAGAGA
GATGAGAAGAGACTCGATCGAGGACTGAGAGACGAAAAAGCACGCATTTA
AAAGCAACTAGGCCTTGCTCAAATGCTTCTACAATCCTTCTCTTCATCCT
CTAACCCCTCCCTTCCTCCCTCCCCTTAACTCACATTCAACAGCCAGCCA
CCACACCACCACAAGGACAGCAGCAGCAGGAGCAGAAGCAGCAGCAGTAC
CAATGACATCACCAGCAGCAATGGCTACCGTAAAGACAGACGAGCCCAAG
GGAGAGAGTATCACTTTGCGAGTCAAGGACCAGACGGGAGAGGAGACAAT
GTTCAAGGTAGAAACAGAGGGAGGGAGGGAGGGAGGGAGGGAGGAACAAA
GAAAGGTATGTTATGAATAGAAAAATGTGATCGGCGCCAATGCACGGTGA
AGTGAAATAAAATTTGTCGCGACTCAGATTTCTCGTCCTCATCCCTCTCT
CCTTCCCTCCCTCTTCTCCCCAAACAGGTGAAGAAGACAACTAAGATGGA
GAAAGTCTTCAACACATATGCCACACGCAAGGGCATCAACTCCAATGCTC
TCCGTTTCCTCCTCGACGGGCTGGTAAGGCGAGGAAGGGAGGAAGGGAAG
GAGGGAGGGAGGGAGGGAGGGAGGGGAGGTGGGGAAATGACGTCTTCGGC
AGCGTTGGGCTTGCCGCTACCATTCACGCTCTTTTCTCTTTTTCTTCTCA
CTATCACATGTGGAGGGAAGAAGGAAGGGAGGGAAGAAAGGAAGGAGGGA
GGGAGGAATGATGAACCGAATGACTCAGGCCGACGTTTTTATTTCATTTT
ACAGCGAATCGAGAAACATCAAACGCCTGAAGAGCTGGACCTGGAAGACG
AGGATCAGGTGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGCGGACGA
AGGGGGAGACAAGTGCGATGTAAAGATGTTTATATACTCAGATGTCGGCA
AGTGAGGGAAATAGGGAAGGAATGATTGAAGATTCTCATGTTCCTTCTCT
TGCTCTTCACGGCCCATGTCTAGATCGACGTCATGCTGGAGCAGCTTGGG
GGGCATCGATTACGGTCACAAAACCATTTAGCTGTACAAGAAAAGAATGA
GAAATGAAGAAGAGACAGAAAGAGGGAGAGGGAGAGGGAGAAAGAGAAAA
AGAAGAGAGATAGGAGGGGGAGAGCGGCCTGGATTAGAAAACGAGGAAAG
ATGAAAGAGAAAATCAAAGCAAATCTCACTCTTGACCACCAAGAC
back to top

Coding sequence (CDS) from alignment at chr1:1361357..1363201+

>NO01G05120.1 ID=NO01G05120.1|Name=NO01G05120.1|organism=Nannochloropsis oceanica|type=CDS|length=339bp|location=Sequence derived from alignment at chr1:1361357..1363201+ (Nannochloropsis oceanica)
ATGACATCACCAGCAGCAATGGCTACCGTAAAGACAGACGAGCCCAAGGG
AGAGAGTATCACTTTGCGAGTCAAGGACCAGACGGGAGAGGAGACAATGT
TCAAGGTGAAGAAGACAACTAAGATGGAGAAAGTCTTCAACACATATGCC
ACACGCAAGGGCATCAACTCCAATGCTCTCCGTTTCCTCCTCGACGGGCT
GCGAATCGAGAAACATCAAACGCCTGAAGAGCTGGACCTGGAAGACGAGG
ATCAGATCGACGTCATGCTGGAGCAGCTTGGGGGGCATCGATTACGGTCA
CAAAACCATTTAGCTGTACAAGAAAAGAATGAGAAATGA
back to top
Synonyms
Publications