NO01G05060.1, NO01G05060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05060.1
Unique NameNO01G05060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1702
Alignment locationchr1:1346808..1349277 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1346808..1349277 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G05060.1 vs.
Match: EWM29438.1 (hypothetical protein Naga_100083g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 222.2 bits (565), Expect = 1.800e-54
Identity = 123/226 (54.42%), Postives = 155/226 (68.58%), Query Frame = 0 
Query:   10 KRL-RPFPNVASY--PTQGIALCLFMLVLSHLSTTAKAFQLRTSLSSS-KFSHRLRRVQYVKMASSSSSSFSTPAPSSRSSDEGTFPYRLIDSHHHVWTDGEEPFPYANGQSAPPGLQDSGTAEKFLTLAAAAGVERSLIVQPILYLYDHSYVRSVLQAHPGKFEGMLNANPTLSPEAAAAAIVRLHGEGFKSIRFNPYIWPAGEKMDNDVGRAMFAEAGRLGMPV 232
            KRL R FP V +   P   + L + +L L   +T  +A   R   SS+   S R++  +++   +S+SS  S        S++  FPYRLIDSHHHVWT G  P+ YA GQSAPPGLQ+ G+ E+FL LAA AGV+RSLIVQPILY++DHSYVR+ L+ +P KF GML ANPTLSP+ A A + RL  +GF S+RFNPYIWPAGEKMDN  GRA++AEAGR  MPV
Sbjct:    3 KRLGRHFPIVCTLQPPRNTLLLFMILLTLGRTNTFVEALVSRVHSSSAFSLSQRIQPPRHLLRMASTSSVDSV-------SNKDGFPYRLIDSHHHVWTAGLLPYAYAEGQSAPPGLQEKGSVEEFLGLAANAGVQRSLIVQPILYMFDHSYVRAALERYPEKFHGMLVANPTLSPQEATAELGRLQSQGFNSVRFNPYIWPAGEKMDNPTGRALYAEAGRRTMPV 221
The following BLAST results are available for this feature:
BLAST of NO01G05060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29438.11.800e-5454.42hypothetical protein Naga_100083g1, partial [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05060NO01G05060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05060.1NO01G05060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05060.1.cds1NO01G05060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05060.1.cds2NO01G05060.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05060.1.cds3NO01G05060.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05060.1.cds4NO01G05060.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05060.1 ID=NO01G05060.1|Name=NO01G05060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1702bp
AGATACACACAACACAGGTGAATACACGGAGGAGTGAGGAAAAAAAGAGC
GTGTCCAGATAAGTTGCATCCAGGACAACGCTCAATGCCGCAGCGCTTTG
GCAGGAGAAGCAAACGTCTACGCCCCTTCCCCAACGTTGCCTCTTACCCC
ACCCAAGGCATTGCCTTGTGCCTTTTCATGTTGGTGCTGAGCCACCTTAG
CACCACCGCCAAAGCCTTCCAATTACGCACGTCTTTATCATCTTCTAAAT
TCAGCCATCGTCTTCGACGAGTACAGTACGTGAAAATGGCCTCCTCGTCG
TCGTCCTCCTTCTCCACTCCAGCACCGAGCAGCAGAAGTAGCGACGAGGG
AACTTTTCCCTATCGGCTCATCGACTCCCACCACCACGTCTGGACGGATG
GTGAGGAACCTTTCCCGTACGCCAACGGCCAGAGTGCTCCACCAGGTCTG
CAAGACAGCGGGACGGCGGAGAAATTTCTGACACTGGCAGCCGCTGCAGG
TGTAGAGCGTTCTTTGATCGTACAGCCAATCCTTTACCTGTACGATCATT
CATACGTTCGCTCGGTTCTACAGGCCCACCCTGGCAAGTTTGAAGGTATG
CTCAACGCCAACCCTACCCTCTCTCCCGAGGCAGCAGCAGCAGCCATCGT
GCGGCTGCACGGGGAAGGGTTTAAGTCTATTCGATTCAATCCCTATATAT
GGCCAGCTGGGGAAAAGATGGACAATGACGTTGGCAGGGCCATGTTCGCC
GAAGCTGGTCGCCTTGGGATGCCTGTAGGGTTGATGCTCTTCAAAGGGCT
GCACCTCCACCTCCCGGAAGTCAACGCCCTCCTCTCCCTCCCCCGCTCCC
TCCATCCCCCCCCCCTGTGATTCTTGATCATTGGGGTTTTTTCCATCAAG
ATGGAAGGGACGTACCAGAGGCATGGGATGCCCTGCTCTCCCTCGCGCAG
TACTCGCACGTGACGGTGAAAATTTCGGCCTTTTTCCGGGTATCGTCGCA
GCCGTGGCCTTTCCATGATTTGGCGCCACGATTGGAGGAGCTTGTGAGGG
TATTTGGAAGTGAGAGGCTGATGTGGGGGAGCGATTTTCCCTATGTGACA
ACGATGGGAGGAGGCTACGCGAAAGCACCCAGGACCGTGCTGGAATGGCG
ACAGGCCGGCCTGCTGCCCTCTCTGACAGAGAGGGATTATCAAAACCTGT
TCAGCGGTACTTACTTGAAGGTATTTGGGGGCCAATAGATACAGAGAGGA
GGGAGGCAGTAGAAAGAGAGATGTAGGTATCTAAAAAGAAGGAAAAGGAG
TGTGAGTGTGAAGGAGCAAGCAAGCATACGTCGAAAAAGGAGGAGAGCGA
GGAGGAAGCAGACTGAGAGACGACAAGGAATTTTGTGATTCGGGCCCACA
TGTCATGTGGTCTGTGCGATCTCACCGGACAGGCAGCAGGGTGCCATCAC
CATCGCCGCACCCCGCGGTCCACTAACGAGAGGCAGGTGTACGAGACCAG
TACACACTTCAGGTCTGCTAAATACTTAGATCATCACCCCCCTCCCTCTC
CCTCCTTTCGGACTCATCCACCTCCTGGACACTGACGCCTTTGTCGTGCA
TAGCCGTGAAGGAAAGGAGAAAGAGGAAAGAAATGACAGACTAAGCGTAG
AGAGAGAGGTGAGGGGGGCAAGGAAGAAAAAACAGGAGATATATGATGGA
CG
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protein sequence of NO01G05060.1

>NO01G05060.1-protein ID=NO01G05060.1-protein|Name=NO01G05060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MPQRFGRRSKRLRPFPNVASYPTQGIALCLFMLVLSHLSTTAKAFQLRTS
LSSSKFSHRLRRVQYVKMASSSSSSFSTPAPSSRSSDEGTFPYRLIDSHH
HVWTDGEEPFPYANGQSAPPGLQDSGTAEKFLTLAAAAGVERSLIVQPIL
YLYDHSYVRSVLQAHPGKFEGMLNANPTLSPEAAAAAIVRLHGEGFKSIR
FNPYIWPAGEKMDNDVGRAMFAEAGRLGMPVGLMLFKGLHLHLPEVNALL
SLPRSLHPPPL*
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mRNA from alignment at chr1:1346808..1349277-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05060.1 ID=NO01G05060.1|Name=NO01G05060.1|organism=Nannochloropsis oceanica|type=mRNA|length=2470bp|location=Sequence derived from alignment at chr1:1346808..1349277- (Nannochloropsis oceanica)
AGATACACACAACACAGGTGAATACACGGAGGAGTGAGGAAAAAAAGAGC
GTGTCCAGATAAGTTGCATCCAGGACAACGCTCAATGCCGCAGCGCTTTG
GCAGGAGAAGCAAACGTCTACGCCCCTTCCCCAACGTTGCCTCTTACCCC
ACCCAAGGCATTGCCTTGTGCCTTTTCATGTTGGTGCTGAGCCACCTTAG
CACCACCGCCAAAGCCTTCCAATTACGCACGTCTTTATCATCTTCTAAAT
TCAGCCATCGTCTTCGACGAGTACAGTACGTGAAAATGGCCTCCTCGTCG
TCGTCCTCCTTCTCCACTCCAGCACCGAGCAGCAGAAGTAGCGACGAGGG
AACTTTTCCCTATCGGCTCATCGACTCCCACCACCACGTCTGGACGGATG
GTGAGGAACCTTTCCCGTACGCCAACGGCCAGAGTGCTCCACCAGGTCTG
CAAGACAGCGGGTACGTGAGAAACACAGAGACGCTCTAATGCGCTCCCCC
ATCATTTTTTTCATTTCTTCTCACATCTTCGCTTTGCACACAACACCTGA
CGACAGGACGGCGGAGAAATTTCTGACACTGGCAGCCGCTGCAGGTGTAG
AGCGTTCTTTGATCGTACAGCCAATCCTTTACCTGTACGATCATTCATGT
ACGTACTCGATCACCCTCCCTCTTTCCCTCCCTCCCTCCCTCCCTCTCCC
TCTCCTCCCTTTATCCCCTCCTCTCCCTCTGGCCCACATTTCTTCACCTC
CTCCACCTTTATCTCTTTCTTCTATCATTTAGACGTTCGCTCGGTTCTAC
AGGCCCACCCTGGCAAGTTTGAAGGTATGCTCAACGCCAACCCTACCCTC
TCTCCCGAGGCAGCAGCAGCAGCCATCGTGCGGCTGCACGGGGAAGGGTT
TAAGTCTATTCGATTCAATCCCTATATATGGCCAGCTGGGGAAAAGGTAG
GCGCATGGAAAGGAAGGAAGGAAGCAAAGAAGGAGGGAGGGAGGGAGGAA
GGGAGTGACGAATGCGAGATGCTAATTCCTAATTTTCACTGTCTCCTCTT
TTCCTCTACCTCCCCGCCTACCTCGCTGCCTCCGTTCCTCCTTTCCTCCT
TCCCTTTTTTGAGATGGACAATGACGTTGGCAGGGCCATGTTCGCCGAAG
CTGGTCGCCTTGGGATGCCTGTAGGGTTGATGCTCTTCAAAGGGCTGCAC
CTCCACCTCCCGGAAGTCAACGCCCTCCTCTCCCTCCCCCGCTCCCTCCA
TCCCCCCCCCCTGTGATTCTTGATCATTGGGGTTTTTTCCATCAAGATGG
AAGGGACGTACCAGAGGCATGGGATGCCCTGCTCTCCCTCGCGCAGTACT
CGCACGTGACGGTGAAAATTTCGGCCTTTTTCCGGGTATCGTCGCAGCCG
TGGCCTTTCCATGATTTGGCGCCACGATTGGAGGAGCTTGTGAGGGTATT
TGGAAGTGAGAGGCTGATGTGGGGGAGGTGAGGAAAGGATTTAAAAGGGA
GGAAGAGAGGGAGGGAGGGAGGGAGGAAGGGAAGGAAGGAGGGAGGGAGG
GAGGGAGGGAGAAAGGGAGGCGGAAGGTACAGCCCTGAGACGAGGGGATG
GGGTAATCGAATCAGGTCGTAGGCGTAGACCCGCCTTGTGTAGAATGGCA
CGATAAACACCCATAGATTCATAAAAAGTGACGGTGGTTTTCTTCCATTT
CCTTCCCTCTGCCAACCTCGTCCTGTCCATTCATCGCCCTTATTTGGAGG
AGCTGTTGAACGCACACCCCACAACACAAATCCTTATAAATAAATGCCCT
CACCCACCCACTCATGCACCCTCCCTGGCACATACATCTCCTTCCACAGC
GATTTTCCCTATGTGACAACGATGGGAGGAGGCTACGCGAAAGCACCCAG
GACCGTGCTGGAATGGCGACAGGCCGGCCTGCTGCCCTCTCTGACAGAGA
GGGATTATCAAAACCTGTTCAGCGGTACTTACTTGAAGGTATTTGGGGGC
CAATAGATACAGAGAGGAGGGAGGCAGTAGAAAGAGAGATGTAGGTATCT
AAAAAGAAGGAAAAGGAGTGTGAGTGTGAAGGAGCAAGCAAGCATACGTC
GAAAAAGGAGGAGAGCGAGGAGGAAGCAGACTGAGAGACGACAAGGAATT
TTGTGATTCGGGCCCACATGTCATGTGGTCTGTGCGATCTCACCGGACAG
GCAGCAGGGTGCCATCACCATCGCCGCACCCCGCGGTCCACTAACGAGAG
GCAGGTGTACGAGACCAGTACACACTTCAGGTCTGCTAAATACTTAGATC
ATCACCCCCCTCCCTCTCCCTCCTTTCGGACTCATCCACCTCCTGGACAC
TGACGCCTTTGTCGTGCATAGCCGTGAAGGAAAGGAGAAAGAGGAAAGAA
ATGACAGACTAAGCGTAGAGAGAGAGGTGAGGGGGGCAAGGAAGAAAAAA
CAGGAGATATATGATGGACG
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Coding sequence (CDS) from alignment at chr1:1346808..1349277-

>NO01G05060.1 ID=NO01G05060.1|Name=NO01G05060.1|organism=Nannochloropsis oceanica|type=CDS|length=786bp|location=Sequence derived from alignment at chr1:1346808..1349277- (Nannochloropsis oceanica)
ATGCCGCAGCGCTTTGGCAGGAGAAGCAAACGTCTACGCCCCTTCCCCAA
CGTTGCCTCTTACCCCACCCAAGGCATTGCCTTGTGCCTTTTCATGTTGG
TGCTGAGCCACCTTAGCACCACCGCCAAAGCCTTCCAATTACGCACGTCT
TTATCATCTTCTAAATTCAGCCATCGTCTTCGACGAGTACAGTACGTGAA
AATGGCCTCCTCGTCGTCGTCCTCCTTCTCCACTCCAGCACCGAGCAGCA
GAAGTAGCGACGAGGGAACTTTTCCCTATCGGCTCATCGACTCCCACCAC
CACGTCTGGACGGATGGTGAGGAACCTTTCCCGTACGCCAACGGCCAGAG
TGCTCCACCAGGTCTGCAAGACAGCGGGACGGCGGAGAAATTTCTGACAC
TGGCAGCCGCTGCAGGTGTAGAGCGTTCTTTGATCGTACAGCCAATCCTT
TACCTGTACGATCATTCATACGTTCGCTCGGTTCTACAGGCCCACCCTGG
CAAGTTTGAAGGTATGCTCAACGCCAACCCTACCCTCTCTCCCGAGGCAG
CAGCAGCAGCCATCGTGCGGCTGCACGGGGAAGGGTTTAAGTCTATTCGA
TTCAATCCCTATATATGGCCAGCTGGGGAAAAGATGGACAATGACGTTGG
CAGGGCCATGTTCGCCGAAGCTGGTCGCCTTGGGATGCCTGTAGGGTTGA
TGCTCTTCAAAGGGCTGCACCTCCACCTCCCGGAAGTCAACGCCCTCCTC
TCCCTCCCCCGCTCCCTCCATCCCCCCCCCCTGTGA
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Synonyms
Publications