NO01G05050.1, NO01G05050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05050.1
Unique NameNO01G05050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3312
Alignment locationchr1:1340872..1346629 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1340872..1346629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G05050.1 vs.
Match: GAX98232.1 (histidine-tRNA ligase [Pythium insidiosum])

HSP 1 Score: 619.4 bits (1596), Expect = 2.000e-173
Identity = 387/849 (45.58%), Postives = 503/849 (59.25%), Query Frame = 0
Query:  171 LSVLHHHLPPSSLPLTLSEVQALRTGTFAHTGPAGLHAYALTNLLSEADLIAATTCEVLHACVEPFQALHFDTHRPHRGQVTSAANLRLLLEGSMLVKPAVGGKGGGGGRRGGGEEGGGMDPEAVRCIPQVHGPCRDIIEGSVKALELELNSAESAVPNGGKEGGREGGMLGSYHPAQVAAVSDNLRNALAILQQASRARLQLLSSSSSSSSSSSSSSSSPPPTSSLASLSLSSSPPTLPSLTATLATELSSSLSLLLHHEYQAAAAAA---AKKDKAAQRSAAAAAKEGGRGGGREGGEAPIEEQDPWLLRRQQYLALEQGGREGGKEGGL-SVDVG----LLVQCLDPLLGDGGEGEGGREGGRGGGPFVRALLERLSSGGQLRKPKIAKGVRDFGEESMLVREEAFSRIRRVFKLHGAREIDTPVFELKETLTGKYGEDSKLIYDLADQGGELLSLRYDLTVPFARYLAMYNPGNIKRYHIAKVYRRDNPAMARGRFREFYQCDFDIAGTYPPMVPDAEVLTVAVEILSALP-IGGFCIKINHRKILDSVFEICGVPAEKFRTICSAVDKLDKESWETVKKEMTEEKGLHPAVADRIGTFVTFKGAPKELHALLLAQDVFQGHAVAVAALAEMETLFGYLEAMGSLHAISFDLSLARGLDYYTGVIYEAVLTDKESIVGSIAAGGRYDNLVGMFSVSGTETPCVGVSIGIERVLAIMEANRLKALKAKEQEGVREDGAGSTSHPRRRSPFVEVLVATIGAGMLPHRMRLARQLWTAGIPAEYLPQENPKLKKQMEHAHENGIPFLVIVGGDERKKGVVKVKDPSRPQEESEEEVKEEDMAANLISK 1011
            ++++   + P    L+  E+ AL            L       LL  AD +AA TCEV+ A   PF+A + D  RPHRG VTSA NLRL+LE S  V                       D + +R IPQ HGP RD +  + K +ELELN   SAVP             G +HP  +  V  +  +AL +L Q S  R ++++  +S+ +  S  +                    +   T  L  E   + +     E Q  A  A   A+  +AA+++AAAAAKE       E   A  E Q   +L +++    +Q  +E  K+G   SV VG     L Q +  L               G   FV  L  RL SGG  RKPKIAKG +DF    M +RE+ F++IR VFK H   EI+TPVFELKETLTGKYGEDSKLIYDLADQGGELL+LRYDLTVPFAR++A++NPGNIKRYHIA+VYRRDNP MARGRFREFYQCDFDIAGTY PM+PDAEVL++ +E+L   P +G F +K++HR +LD++  ICGVPA+KFRT CSA+DKLDKE W  V+ EM +EKG+  AVADRI  FVT  G+P+ELH  +  + +F  +A A  A+ E+ TLF YL+AMG L  +SFDLSLARGLDYYTG+IYE VLT  E  VGSIAAGGRYDNLVGMFS +G + PCVGVS+GIER+  I++A+      A++ + +               P  +VLVA+ G+ +L  R+ + ++LW A I AE +  ENPK KKQ++HA E GIPF+V++G DE  KG VKVKD +  +E S   V   +M A L+ +
Sbjct:  139 MALMDASIAPPVWALSRRELAALSETPVVLLAVTTLVVSGARGLLPVADAVAALTCEVVQASSLPFEAEYVDASRPHRGIVTSATNLRLMLETSKFVNAPKDAP----------------DADCIRHIPQYHGPARDAVAAAAKTVELELN---SAVPT----------TAGWFHPQALKTVLASTVDALTVLLQGSNERRRVVAPEASAIAPQSQCAVE-----------------LVEVTTQALVAEAELAFAFFDKEEQQLKAKQAESNARAQEAAEKAAAAAAKED------EKLAAMPEAQRLKILEKRRKKLEKQKEKESAKKGAKDSVRVGAGSAALRQHVQSLGAWAAHVNAFDARPSGFSQFVEELFARLGSGGARRKPKIAKGAQDFLPPQMQLREKIFNKIRMVFKRHAGVEIETPVFELKETLTGKYGEDSKLIYDLADQGGELLALRYDLTVPFARFMALHNPGNIKRYHIARVYRRDNPQMARGRFREFYQCDFDIAGTYAPMLPDAEVLSIGIEVLQQFPELGPFKVKLSHRVLLDAILAICGVPADKFRTTCSAIDKLDKEPWAAVRSEMVDEKGIPEAVADRIQHFVTRVGSPRELHRAMTEEKLFGDNADAARAMGELGTLFEYLDAMGVLDFVSFDLSLARGLDYYTGLIYEFVLTSPEHNVGSIAAGGRYDNLVGMFSATGQQIPCVGVSMGIERIFGILQAH------AEKTQAINR-------------PTAQVLVASTGSSLLLERLSVCKELWRANISAEIMQIENPKFKKQLQHALETGIPFMVVIGEDELAKGEVKVKDMASKEEVS---VARSEMVAELLRR 913          
The following BLAST results are available for this feature:
BLAST of NO01G05050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
GAX98232.12.000e-17345.58histidine-tRNA ligase [Pythium insidiosum][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05050NO01G05050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05050.1NO01G05050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05050.1.cds1NO01G05050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05050.1.cds2NO01G05050.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05050.1.cds3NO01G05050.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05050.1.cds4NO01G05050.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05050.1.cds5NO01G05050.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05050.1.cds6NO01G05050.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05050.1.cds7NO01G05050.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05050.1.cds8NO01G05050.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05050.1.cds9NO01G05050.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05050.1.cds10NO01G05050.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05050.1.cds11NO01G05050.1.cds11Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05050.1 ID=NO01G05050.1|Name=NO01G05050.1|organism=Nannochloropsis oceanica|type=mRNA|length=3312bp
CGAGGTCAAGAGTTGCTTTCTGGGATGGGTTTGGAAGCTTACTCCACTGC
CACGACGCACCGCCACAGTTATGTTACATGTTCTTTACTGCCAGTATTCT
CTATCCATCTGACCAGTCTGTGCGGGATTAGGCCCTTTAGGGATAGCAAA
AGCTGCCCATCTCAATCAGTAGCATTCCTCTCCTTCCTTCCTCAACACCA
TCCATGCTTGAACGACACGCACGACGCCCTCATAATTCAACCACACAACA
CTCCCATATGAACGAACAATCATATATAATACGCACATACATCTCTACAG
CGTGCTCGAGTCGCATGGCGGACGGCAACAATGGCGGCAACGACTCGTCC
ACCGAGCCGCGTAAGCCTGTGCTGCACCTGGGGCCGTCACGTCGCTTCAC
CCTCGGAGATCTAGCGGCGGTAGCCACGGGCACTGCTCACCTCGAGCTGG
AAGAGCCGGCCTTGGATGCGCTTCCTGCACTTTCCCCTAATGCTGCACCG
GCCCCTCCTATTTTACCACCATTACCTTCAGACGGAGATGGAGAGCTTCT
CACCATCCCCGAAACCCGCGCTGTTATCGTTGCCCGACTCGCCTCCCTAG
TCCAAGGCCGGGCCACCGTTAGTCGGGAAACATTGGAAATCCTTGCTTCC
CTCTTAAACGACCCCTCCTCCTCTCTCCCTGCCTTCCACAAATCCCACGA
AGCCGACAATCTTCTCTCCGTCCTCCACCACCACCTTCCCCCCTCCTCCC
TCCCCCTCACCCTCTCCGAGGTGCAAGCGCTACGCACGGGAACATTCGCA
CACACGGGGCCTGCAGGCTTACATGCTTATGCCCTGACCAATCTGTTGTC
TGAGGCGGATCTCATTGCAGCGACGACGTGTGAGGTCCTGCATGCTTGCG
TGGAGCCGTTCCAAGCCCTTCATTTCGACACGCATAGGCCACACCGGGGA
CAGGTGACGTCAGCGGCGAACCTCCGGCTGTTATTAGAAGGGTCGATGCT
GGTCAAGCCAGCTGTGGGCGGAAAAGGAGGAGGAGGAGGAAGAAGGGGAG
GAGGGGAGGAGGGAGGCGGGATGGACCCCGAGGCTGTGCGATGTATTCCC
CAGGTCCACGGTCCCTGTCGAGACATCATCGAAGGGAGCGTCAAGGCCTT
AGAGCTGGAGTTAAATAGCGCCGAGTCTGCCGTGCCCAATGGAGGGAAGG
AGGGAGGGAGGGAGGGAGGGATGCTCGGGTCGTACCACCCGGCACAAGTG
GCAGCGGTGTCGGATAATTTGCGGAACGCCCTGGCCATCCTCCAACAAGC
CAGCCGCGCCCGCCTCCAACTCCTCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCCCGCCCCCCACCTCCTCCCTCGCCTCC
CTCTCCCTCTCCTCTTCCCCTCCCACCCTCCCCTCCCTAACGGCCACCCT
AGCTACCGAGCTCTCCTCCTCCCTCTCCCTCCTCCTCCACCACGAGTATC
AAGCCGCCGCCGCCGCCGCCGCCAAAAAAGATAAGGCTGCCCAACGCTCT
GCTGCTGCTGCTGCCAAGGAGGGAGGGAGAGGGGGAGGGAGGGAAGGAGG
GGAAGCACCGATCGAGGAGCAGGACCCATGGTTGCTCCGACGACAGCAGT
ATCTTGCCCTCGAGCAGGGAGGGAGGGAGGGGGGAAAAGAGGGAGGGCTG
TCCGTGGACGTTGGCCTACTCGTTCAATGCCTTGATCCTCTGTTGGGCGA
TGGAGGGGAAGGGGAGGGAGGGAGGGAGGGAGGGAGGGGGGGAGGCCCGT
TCGTGCGGGCCTTGCTGGAGAGGTTGAGCAGTGGGGGGCAGTTGCGGAAG
CCGAAGATCGCCAAGGGCGTGAGGGACTTCGGGGAGGAGAGCATGCTAGT
GCGGGAGGAGGCGTTTAGTCGCATCCGGCGAGTGTTTAAGTTGCACGGGG
CGCGCGAGATCGATACCCCTGTGTTTGAATTGAAGGAGACCTTGACGGGG
AAGTACGGGGAGGACAGCAAGCTCATCTACGACCTGGCGGATCAAGGCGG
CGAGCTTCTCTCCCTCCGGTACGACCTGACGGTGCCCTTTGCGCGGTATT
TGGCCATGTACAACCCGGGCAACATCAAGCGCTACCACATCGCCAAGGTC
TACCGCCGGGACAATCCGGCCATGGCCCGCGGTCGCTTCCGTGAGTTTTA
TCAATGTGATTTCGACATAGCCGGTACCTATCCTCCCATGGTTCCCGATG
CGGAGGTTCTGACCGTCGCTGTTGAGATTTTGAGCGCATTGCCCATCGGG
GGCTTTTGCATCAAGATTAATCATCGCAAGATTTTGGATAGTGTCTTTGA
GATCTGTGGAGTGCCCGCGGAGAAGTTCCGAACGATTTGCTCGGCCGTGG
ATAAGCTGGACAAGGAGAGCTGGGAGACGGTCAAGAAGGAGATGACGGAG
GAGAAGGGCCTGCACCCCGCCGTCGCTGATCGAATAGGCACCTTCGTCAC
CTTCAAGGGCGCGCCTAAAGAGCTGCACGCGCTGTTGCTCGCCCAAGACG
TCTTCCAAGGACATGCAGTCGCCGTGGCAGCACTGGCGGAGATGGAGACG
CTATTCGGGTATTTGGAGGCGATGGGCAGCCTACACGCCATCTCGTTCGA
TCTATCCCTGGCCCGGGGCCTGGATTACTACACCGGCGTGATCTACGAGG
CAGTCCTCACAGACAAGGAATCCATCGTCGGTTCTATTGCTGCCGGTGGG
CGCTACGACAACCTCGTGGGCATGTTTTCCGTCAGTGGGACCGAGACCCC
CTGCGTGGGGGTCAGCATTGGCATTGAGCGCGTCCTGGCCATCATGGAAG
CCAACCGCCTCAAAGCCCTCAAGGCGAAGGAGCAGGAGGGTGTCAGGGAG
GACGGGGCTGGGTCCACAAGCCACCCTCGCCGTCGGTCTCCTTTTGTGGA
GGTCCTGGTGGCGACGATCGGCGCCGGCATGCTCCCTCATCGGATGCGCC
TGGCAAGGCAATTGTGGACCGCGGGGATTCCCGCCGAGTACCTCCCGCAG
GAGAATCCCAAGCTGAAGAAGCAGATGGAGCATGCGCACGAGAACGGCAT
TCCGTTTTTGGTGATCGTGGGAGGGGATGAGAGGAAGAAGGGGGTGGTCA
AGGTCAAGGACCCGAGCAGGCCTCAAGAGGAGAGCGAGGAGGAGGTGAAG
GAGGAGGACATGGCGGCCAATTTGATCAGCAAGGGAGCGAGGTTTGTTCC
GATTCCGGAGGGGGTGTCGGGGGTGTAAGGGATCAAGTGGGGGGATTGGA
GGGAGGGAGGGA
back to top

protein sequence of NO01G05050.1

>NO01G05050.1-protein ID=NO01G05050.1-protein|Name=NO01G05050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1025bp
MLERHARRPHNSTTQHSHMNEQSYIIRTYISTACSSRMADGNNGGNDSST
EPRKPVLHLGPSRRFTLGDLAAVATGTAHLELEEPALDALPALSPNAAPA
PPILPPLPSDGDGELLTIPETRAVIVARLASLVQGRATVSRETLEILASL
LNDPSSSLPAFHKSHEADNLLSVLHHHLPPSSLPLTLSEVQALRTGTFAH
TGPAGLHAYALTNLLSEADLIAATTCEVLHACVEPFQALHFDTHRPHRGQ
VTSAANLRLLLEGSMLVKPAVGGKGGGGGRRGGGEEGGGMDPEAVRCIPQ
VHGPCRDIIEGSVKALELELNSAESAVPNGGKEGGREGGMLGSYHPAQVA
AVSDNLRNALAILQQASRARLQLLSSSSSSSSSSSSSSSSPPPTSSLASL
SLSSSPPTLPSLTATLATELSSSLSLLLHHEYQAAAAAAAKKDKAAQRSA
AAAAKEGGRGGGREGGEAPIEEQDPWLLRRQQYLALEQGGREGGKEGGLS
VDVGLLVQCLDPLLGDGGEGEGGREGGRGGGPFVRALLERLSSGGQLRKP
KIAKGVRDFGEESMLVREEAFSRIRRVFKLHGAREIDTPVFELKETLTGK
YGEDSKLIYDLADQGGELLSLRYDLTVPFARYLAMYNPGNIKRYHIAKVY
RRDNPAMARGRFREFYQCDFDIAGTYPPMVPDAEVLTVAVEILSALPIGG
FCIKINHRKILDSVFEICGVPAEKFRTICSAVDKLDKESWETVKKEMTEE
KGLHPAVADRIGTFVTFKGAPKELHALLLAQDVFQGHAVAVAALAEMETL
FGYLEAMGSLHAISFDLSLARGLDYYTGVIYEAVLTDKESIVGSIAAGGR
YDNLVGMFSVSGTETPCVGVSIGIERVLAIMEANRLKALKAKEQEGVRED
GAGSTSHPRRRSPFVEVLVATIGAGMLPHRMRLARQLWTAGIPAEYLPQE
NPKLKKQMEHAHENGIPFLVIVGGDERKKGVVKVKDPSRPQEESEEEVKE
EDMAANLISKGARFVPIPEGVSGV*
back to top

mRNA from alignment at chr1:1340872..1346629+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05050.1 ID=NO01G05050.1|Name=NO01G05050.1|organism=Nannochloropsis oceanica|type=mRNA|length=5758bp|location=Sequence derived from alignment at chr1:1340872..1346629+ (Nannochloropsis oceanica)
CGAGGTCAAGAGTTGCTTTCTGGGATGGGTTTGGAAGCTTACTCCACTGC CACGACGCACCGCCACAGTTATGTTACATGTTCTTTACTGCCAGTATTCT CTATCCATCTGACCAGTCTGTGCGGGATTAGGCCCTTTAGGGATAGCAAA AGCTGCCCATCTCAATCAGTAGCATTCCTCTCCTTCCTTCCTCAACACCA TCCATGCTTGAACGACACGCACGACGCCCTCATAATTCAACCACACAACA CTCCCATATGAACGAACAATCATATATAATACGCACATACATCTCTACAG CGTGCTCGAGTCGCATGGCGGACGGCAACAATGGCGGCAACGACTCGTCC ACCGAGCCGCGTAAGCCTGTGCTGCACCTGGGGCCGTCACGTCGCTTCAC CCTCGGAGATCTAGCGGCGGTAGCCACGGGCACTGCTCACCTCGAGCTGG AAGAGCCGGCCTTGGATGCGCTTCCTGCACTTTCCCCTAATGCTGCACCG GCCCCTCCTATTTTACCACCATTACCTTCAGACGGAGATGGAGAGCTTCT CACCATCCCCGAAACCCGCGCTGTTATCGTTGCCCGACTCGCCTCCCTAG TCCAAGGCCGGGCCACCGTTAGTCGGGAAACATTGGAAATCCTTGCTTCC CTCTTAAACGACCCCTCCTCCTCTCTCCCTGCCTTCCACAAATCCCACGA AGCCGACAATCTTCTCTCCGTCCTCCACCACCACCTTCCCCCCTCCTCCC TCCCCCTCACCCTCTCCGAGGTGCAAGCGCTACGCACGGGAACATTCGCA CACACGGGGCCTGCAGGCTTACATGCTTATGCCCTGACCAATCTGTTGTC TGAGGCGGATCTCATTGCAGCGACGACGTGTGAGGTCCTGCATGCTTGCG TGGAGCCGTTCCAAGCCCTTCATTTCGACACGCATAGGCCACACCGGGGA CAGGTGACGTCAGCGGCGAACCTCCGGCTGTTATTAGAAGGGTCGATGCT GGTCAAGCCAGCTGTGGGCGGAAAAGGAGGAGGAGGAGGAAGAAGGGGAG GAGGGGAGGAGGGAGGCGGGATGGACCCCGAGGCTGTGCGATGTATTCCC CAGGTGGGTTGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA GGGAGGGAGGGGAGAGAGCAGAGGGATAGAAGGGAGGGAGATGGGAGGGT TCCCAAGGATTAGTAAGCTTTTTCGAAAGCTCAAATAAAACTTGATCTAA TCAGAGCCCGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCGATGT CCCTTTTTCCTTCTCCTCCCTCCTCCTCCTTTTTTATTCCCGGATGACGA ATTTCACAATCCAAGAGAGTACCAATATGAGGGTCATGCCCTCCCTCTCT CCCTCCTTTCCTCCCATGCATTCCTTCCCCCTTCCTCGTTCTCGGCCACC CATCCCTCCCTCCCTCTCTCCCTCCCTCCCCCTCTCGCCCAGGTCCACGG TCCCTGTCGAGACATCATCGAAGGGAGCGTCAAGGCCTTAGAGCTGGAGT TAAATAGCGCCGAGTCTGCCGTGCCCAATGGAGGGAAGGAGGGAGGGAGG GAGGGAGGGATGCTCGGGTCGTACCACCCGGCACAAGTGGCAGCGGTGTC GGATAATTTGCGGGTAAGGAGGAAGGGAGGAAGGGAGGAAGGAAGGAAAG GAGGGTTTTTCGTCGTTCTTCGAATGACAGCAGCGACTCGCCGTCTTTGA GGGTAACAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGTTCC AAGGACACAAATTGCCCTGCATGCACCCATTCTCCCCCTTTCAAGGGGGC GGTGGGGTATTAATGCACGCAGGGTCCAGACACCTTGGTAGATATAGAGC CACGGACAGGCATGGGGAGAGGGGGGAGGGGGAGGCAGGCCCGTCACACG GCCGGGGAGGTGGGGGGTGGGGGCGAAGGAGGGAGGGAGGGAGGGAGGGG TGGCATGCACGGGGTTATCCCGTTTGCGTGCCTTAAGCCCTTCTTTCCTG CACTCCCTGCCTTGGCCCATTGATGTTCCCGCGAGGGGGTCAGGCACTCT CTGTCATCCCAGCCCTCCCGTTCCTTTGGATTGGTTTTATTGGGTGGATC ATTGGATCGTATTAACTCGATTAATTCAATCAATGATCCATTCGTGATTC TCAATCCGTCCTTCTCCCGAGTGCTCCTGGCCGTGGGGAGCCGTTGTCCT TAAGGCTGCCTCCTCCGTTCCCTCTGCTCGTCCCCGGGCGACTGGAGGGA TGAAGCGGACGTAGGTCCCTTTGCCCCCGGGAGGCATACGAGTCATATCA ACGGCACAATTCCTTCCTCCCCTTCCCTCCCTCCCTCCCTCTTTTCGATT TTGACTCTGCGCCCCTCCATGATATTTTGTGCACCTGGTCGTCCTCATCC CTCACTCCCTCCCCTCCCTCCCTCCCTCCCTCTAGAACGCCCTGGCCATC CTCCAACAAGCCAGCCGCGCCCGCCTCCAACTCCTCTCCTCCTCCTCCTC CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCGCCCCCCACCTCCT CCCTCGCCTCCCTCTCCCTCTCCTCTTCCCCTCCCACCCTCCCCTCCCTA ACGGCCACCCTAGCTACCGAGCTCTCCTCCTCCCTCTCCCTCCTCCTCCA CCACGAGTATCAAGCCGCCGCCGCCGCCGCCGCCAAAAAAGATAAGGCTG CCCAACGCTCTGCTGCTGCTGCTGCCAAGGAGGGAGGGAGAGGGGGAGGG AGGGAAGGAGGGGAAGCACCGATCGAGGAGCAGGACCCAGTGAAGCGAGC CAAGATTGAAGCAGCTCGAAAAGCAAAGGCAGACAAAGCAGCTGCAAAAG CAGCAGCGAAAGCGGCTGCGAAAGGAGGGGGGGAGGGAGGGGGGGAGGGA GGGAGGGAGGGGGGATTGGACTAGGCGTGGGGGCTCGAGAGTTCAAGCAG TGGTTGCTCCGACGACAGCAGTATCTTGCCCTCGAGCAGGGAGGGAGGGA GGGGGGAAAAGAGGGAGGGCTGTCCGTGGACGTTGGCCTACTCGTTCAAT GCCTTGATCCTCTGTTGGGCGATGGAGGGGAAGGGGAGGGAGGGAGGGAG GGAGGGAGGGGGGGAGGCCCGTTCGTGCGGGCCTTGCTGGAGAGGTTGAG CAGTGGGGGGCAGTTGCGGAAGCCGAAGATCGCCAAGGGCGTGAGGGACT TCGGGGAGGAGAGCATGCTAGTGCGGGAGGAGGCGTTTAGTCGCATCCGG CGAGTGTTTAAGTTGCACGGGGCGCGCGAGATCGATACCCCTGTGTTTGA ATTGAAGGAGACCTTGACGGGGAAGTACGGGGAGGACAGCAAGCTCATCT ACGACCTGGCGGATCAAGGTAGGATCAGTGAGATATCCTCTATCAATTGA ATCCTAATATATATTTATAAGAAGTGCTCAATTTTGGGTCTCTTTCACAT CGCGTTTCAACAAATGAGAAAGGCCGTCCATCCACATGATTACAACATAC ACCTCTCATCCGATATCCCCGTGCTTCCCTTTCTTCCCTCCCTCCCTCCC TCCCTTCCTTCCTTTCTTTCTCCATTCCTCCCCTCCTCCCTTGCTTTCAC TCCTTCTCCTCAGGCGGCGAGCTTCTCTCCCTCCGGTACGACCTGACGGT GCCCTTTGCGCGGTATTTGGCCATGTACAACCCGGGCAACATCAAGCGCT ACCACATCGCCAAGGCAAGCCGCGCTCCCCTCCCTCCATCCCCTCCTTCC GTCGGTCCCTCCCTCCCTCCTTGCTTCCATGCCTCCTCCTCTCGACTCAC CTTTTCCCTCCTTCCCTCCCTCCTTCCCTCCCTCCCTACCAGGTCTACCG CCGGGACAATCCGGCCATGGCCCGCGGTCGCTTCCGTGAGTTTTATCAAT GTGATTTCGACATAGCCGGTACGTCCTCCTTCCCTCCCTCTCTCCCTCCT TCCCTCCCCCTCCCCCTTGCTCCTTGAGCATCACTTTACACGTGGTCTTC CCTCCCTCCCTCCCTCCCTTCCCAGGTACCTATCCTCCCATGGTTCCCGA TGCGGAGGTTCTGACCGTCGCTGTTGAGATTTTGAGCGCATTGCCCATCG GGGGCTTTTGCATCAAGATTAATCATCGCAAGATTTTGGATAGGTAATGG AGGGGGGGAGGGAGGGGGGGAGGGAGGGGGGAGGAACAGCTGTGAGCATT CAGTGGCGAAAGGTAGACAGCCCCATTTTCACCCCCTTCTCTCTCCTCCT TTTCTTCCCTCCCTCCCTCCCTCCTCCTCCAGTGTCTTTGAGATCTGTGG AGTGCCCGCGGAGAAGTTCCGAACGATTTGCTCGGCCGTGGATAAGCTGG ACAAGGAGAGCTGGGAGACGGTCAAGAAGGAGATGACGGAGGAGAAGGGT GAGGAGGGAGGGACCATGGGAGGGAGCGACCTAGGGAGGGAGGGAGGAAG GGACCGAGGGAGAGAGGGAAGGATGACGGTGACTTGTCCTATTGATGCCC GTGGCATCCACTCACCATCCTCCCTCCTTCCCTCTCCACAGGCCTGCACC CCGCCGTCGCTGATCGAATAGGCACCTTCGTCACCTTCAAGGGCGCGCCT AAAGAGCTGCACGCGCTGTTGCTCGCCCAAGACGTCTTCCAAGGACATGC AGTCGCCGTGGCAGCACTGGCGGAGATGGAGACGCTATTCGGGTATTTGG AGGCGATGGGCAGCCTACACGCCATCTCGTTCGATCTATCCCTGGCCCGG GGCCTGGATTACTACACCGGTAGGTGTTTCCTTCCTGATTTCTCCCTCCC TCCCTCCCTCCCTCCCTCCCTCCTCCCTCCCTCCCCTCATTCTCTTGCGT CTGCTACTTCATTAAAGCAACGTCACGCATCCCTCCCTCCCTCCCTCCCT CCCTCCCTCTCTCCTTCAGGCGTGATCTACGAGGCAGTCCTCACAGACAA GGAATCCATCGTCGGTTCTATTGCTGCCGGTGGGCGCTACGACAACCTCG GTAAGCCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCTCTTTCCCCCCCCC TCCCCCTTTCACTAATCAAATCAAGCTCTCCTCCTTCCCACTCACCTTTG CCTCCCTACCCTCACCCACTAATCAATTCATCTTTCCCTCCCTCCCTCCC TCCCTCCCCCAGTGGGCATGTTTTCCGTCAGTGGGACCGAGACCCCCTGC GTGGGGGTCAGCATTGGCATTGAGCGCGTCCTGGCCATCATGGAAGCCAA CCGCCTCAAAGCCCTCAAGGCGAAGGAGCAGGAGGGTGTCAGGGAGGACG GGGCTGGGTCCACAAGCCACCCTCGCCGTCGGTCTCCTTTTGTGGAGGTC CTGGTGGCGACGATCGGCGCCGGCATGCTCCCTCATCGGATGCGCCTGGC AAGGCAATTGTGGACCGCGGGGATTCCCGCCGAGTACCTCCCGCAGGAGA ATCCCAAGCTGAAGAAGCAGATGGAGCATGCGCACGAGAACGGCATTCCG TTTTTGGTGATCGTGGGAGGGGATGAGAGGAAGAAGGGGGTGGTCAAGGT CAAGGACCCGAGCAGGCCTCAAGAGGAGAGCGAGGAGGAGGTGAAGGAGG AGGACATGGCGGCCAATTTGATCAGCAAGGGAGCGAGGTTTGTTCCGATT CCGGAGGGGGTGTCGGGGGTGTAAGGGATCAAGTGGGGGGATTGGAGGGA GGGAGGGA
back to top

Coding sequence (CDS) from alignment at chr1:1340872..1346629+

>NO01G05050.1 ID=NO01G05050.1|Name=NO01G05050.1|organism=Nannochloropsis oceanica|type=CDS|length=3075bp|location=Sequence derived from alignment at chr1:1340872..1346629+ (Nannochloropsis oceanica)
ATGCTTGAACGACACGCACGACGCCCTCATAATTCAACCACACAACACTC
CCATATGAACGAACAATCATATATAATACGCACATACATCTCTACAGCGT
GCTCGAGTCGCATGGCGGACGGCAACAATGGCGGCAACGACTCGTCCACC
GAGCCGCGTAAGCCTGTGCTGCACCTGGGGCCGTCACGTCGCTTCACCCT
CGGAGATCTAGCGGCGGTAGCCACGGGCACTGCTCACCTCGAGCTGGAAG
AGCCGGCCTTGGATGCGCTTCCTGCACTTTCCCCTAATGCTGCACCGGCC
CCTCCTATTTTACCACCATTACCTTCAGACGGAGATGGAGAGCTTCTCAC
CATCCCCGAAACCCGCGCTGTTATCGTTGCCCGACTCGCCTCCCTAGTCC
AAGGCCGGGCCACCGTTAGTCGGGAAACATTGGAAATCCTTGCTTCCCTC
TTAAACGACCCCTCCTCCTCTCTCCCTGCCTTCCACAAATCCCACGAAGC
CGACAATCTTCTCTCCGTCCTCCACCACCACCTTCCCCCCTCCTCCCTCC
CCCTCACCCTCTCCGAGGTGCAAGCGCTACGCACGGGAACATTCGCACAC
ACGGGGCCTGCAGGCTTACATGCTTATGCCCTGACCAATCTGTTGTCTGA
GGCGGATCTCATTGCAGCGACGACGTGTGAGGTCCTGCATGCTTGCGTGG
AGCCGTTCCAAGCCCTTCATTTCGACACGCATAGGCCACACCGGGGACAG
GTGACGTCAGCGGCGAACCTCCGGCTGTTATTAGAAGGGTCGATGCTGGT
CAAGCCAGCTGTGGGCGGAAAAGGAGGAGGAGGAGGAAGAAGGGGAGGAG
GGGAGGAGGGAGGCGGGATGGACCCCGAGGCTGTGCGATGTATTCCCCAG
GTCCACGGTCCCTGTCGAGACATCATCGAAGGGAGCGTCAAGGCCTTAGA
GCTGGAGTTAAATAGCGCCGAGTCTGCCGTGCCCAATGGAGGGAAGGAGG
GAGGGAGGGAGGGAGGGATGCTCGGGTCGTACCACCCGGCACAAGTGGCA
GCGGTGTCGGATAATTTGCGGAACGCCCTGGCCATCCTCCAACAAGCCAG
CCGCGCCCGCCTCCAACTCCTCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCCCGCCCCCCACCTCCTCCCTCGCCTCCCTC
TCCCTCTCCTCTTCCCCTCCCACCCTCCCCTCCCTAACGGCCACCCTAGC
TACCGAGCTCTCCTCCTCCCTCTCCCTCCTCCTCCACCACGAGTATCAAG
CCGCCGCCGCCGCCGCCGCCAAAAAAGATAAGGCTGCCCAACGCTCTGCT
GCTGCTGCTGCCAAGGAGGGAGGGAGAGGGGGAGGGAGGGAAGGAGGGGA
AGCACCGATCGAGGAGCAGGACCCATGGTTGCTCCGACGACAGCAGTATC
TTGCCCTCGAGCAGGGAGGGAGGGAGGGGGGAAAAGAGGGAGGGCTGTCC
GTGGACGTTGGCCTACTCGTTCAATGCCTTGATCCTCTGTTGGGCGATGG
AGGGGAAGGGGAGGGAGGGAGGGAGGGAGGGAGGGGGGGAGGCCCGTTCG
TGCGGGCCTTGCTGGAGAGGTTGAGCAGTGGGGGGCAGTTGCGGAAGCCG
AAGATCGCCAAGGGCGTGAGGGACTTCGGGGAGGAGAGCATGCTAGTGCG
GGAGGAGGCGTTTAGTCGCATCCGGCGAGTGTTTAAGTTGCACGGGGCGC
GCGAGATCGATACCCCTGTGTTTGAATTGAAGGAGACCTTGACGGGGAAG
TACGGGGAGGACAGCAAGCTCATCTACGACCTGGCGGATCAAGGCGGCGA
GCTTCTCTCCCTCCGGTACGACCTGACGGTGCCCTTTGCGCGGTATTTGG
CCATGTACAACCCGGGCAACATCAAGCGCTACCACATCGCCAAGGTCTAC
CGCCGGGACAATCCGGCCATGGCCCGCGGTCGCTTCCGTGAGTTTTATCA
ATGTGATTTCGACATAGCCGGTACCTATCCTCCCATGGTTCCCGATGCGG
AGGTTCTGACCGTCGCTGTTGAGATTTTGAGCGCATTGCCCATCGGGGGC
TTTTGCATCAAGATTAATCATCGCAAGATTTTGGATAGTGTCTTTGAGAT
CTGTGGAGTGCCCGCGGAGAAGTTCCGAACGATTTGCTCGGCCGTGGATA
AGCTGGACAAGGAGAGCTGGGAGACGGTCAAGAAGGAGATGACGGAGGAG
AAGGGCCTGCACCCCGCCGTCGCTGATCGAATAGGCACCTTCGTCACCTT
CAAGGGCGCGCCTAAAGAGCTGCACGCGCTGTTGCTCGCCCAAGACGTCT
TCCAAGGACATGCAGTCGCCGTGGCAGCACTGGCGGAGATGGAGACGCTA
TTCGGGTATTTGGAGGCGATGGGCAGCCTACACGCCATCTCGTTCGATCT
ATCCCTGGCCCGGGGCCTGGATTACTACACCGGCGTGATCTACGAGGCAG
TCCTCACAGACAAGGAATCCATCGTCGGTTCTATTGCTGCCGGTGGGCGC
TACGACAACCTCGTGGGCATGTTTTCCGTCAGTGGGACCGAGACCCCCTG
CGTGGGGGTCAGCATTGGCATTGAGCGCGTCCTGGCCATCATGGAAGCCA
ACCGCCTCAAAGCCCTCAAGGCGAAGGAGCAGGAGGGTGTCAGGGAGGAC
GGGGCTGGGTCCACAAGCCACCCTCGCCGTCGGTCTCCTTTTGTGGAGGT
CCTGGTGGCGACGATCGGCGCCGGCATGCTCCCTCATCGGATGCGCCTGG
CAAGGCAATTGTGGACCGCGGGGATTCCCGCCGAGTACCTCCCGCAGGAG
AATCCCAAGCTGAAGAAGCAGATGGAGCATGCGCACGAGAACGGCATTCC
GTTTTTGGTGATCGTGGGAGGGGATGAGAGGAAGAAGGGGGTGGTCAAGG
TCAAGGACCCGAGCAGGCCTCAAGAGGAGAGCGAGGAGGAGGTGAAGGAG
GAGGACATGGCGGCCAATTTGATCAGCAAGGGAGCGAGGTTTGTTCCGAT
TCCGGAGGGGGTGTCGGGGGTGTAA
back to top
Synonyms
Publications