NO01G05030.1, NO01G05030.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05030.1
Unique NameNO01G05030.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1472
Alignment locationchr1:1336418..1338409 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1336418..1338409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO01G05030.1 vs.
Match: EWM29430.1 (cell division topological specificity factor [Nannochloropsis gaditana])

HSP 1 Score: 172.2 bits (435), Expect = 1.000e-39
Identity = 87/107 (81.31%), Postives = 101/107 (94.39%), Query Frame = 0 
Query:   15 TEEDLFTMRDLALRFARAFEGFGLSTSMTSPRNMAKERLSIILAHQRLADVDIQQLQADVLACVQKYVKITPEQAVSIKVKQDGGVDVFEMQIALAGAASNMTAAKR 122
            ++E +  MRDLALRFARAFEGFGLSTS+ SPRN+AKERLSIILAHQRL+DV+IQQLQADVLACVQKYVK+ PE+AVSIKVKQDGG+DVFEMQIALAGAA+N++A K+
Sbjct:    8 SKEQIEAMRDLALRFARAFEGFGLSTSLQSPRNVAKERLSIILAHQRLSDVNIQQLQADVLACVQKYVKVRPEEAVSIKVKQDGGIDVFEMQIALAGAAANLSAGKQ 114
The following BLAST results are available for this feature:
BLAST of NO01G05030.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29430.11.000e-3981.31cell division topological specificity factor [Nann... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05030NO01G05030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05030.1NO01G05030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05030.1.cds1NO01G05030.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05030.1.cds2NO01G05030.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05030.1.cds3NO01G05030.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05030.1.cds4NO01G05030.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05030.1 ID=NO01G05030.1|Name=NO01G05030.1|organism=Nannochloropsis oceanica|type=mRNA|length=1472bp
GCGCAGCATGCTGCTCTTTTCTGTGGTGAGTCAGGGGAGGGAGTATTGTC
GTGTGAATGTTGTGCTTGAGTTGAGGGCCCAAACTACCGCAACCAGGAGC
GAGGGTGCCGCGGCCTCGATTACGCAGAGGCATGAGATGCTAAGGCATCC
ACGAGAGAATGCCATCCGCCGCTTCATCGTTGTACTTGCAGTGGAAATGC
TGGTATTTGTATCTCGCGTTATGATGCGAGTGGGTGCATGAGTCTAAAGG
AACATGCAAGAAGAACTGACGTGGGAGTTGAGGAAGCAAGGACGTTAAGA
GAAGGAGGAGGCTTGCCCAGAAACTGATGATGACGATGATGGCATTGCCT
CACAATGGCATGAAAATGCCGTGTGTCCTCGCAGGCAGGCATTACATCTT
AGCCTCGCCGCACGATAACATGCGTTAAGGCTTCAGAAAAGTCAAAGCGC
ACAGGGGGCGGGGCGGTCATTCAAAGGCGGCTGGGTCATCGCCAACTCTT
GCTTCGCGCAGCGAAGCATGAGCATTCTCTATCTGGTCTCACACGACGAA
CTACACCTTACAGAAGAGGACCTATTCACCATGAGAGACTTGGCCCTGCG
GTTTGCCCGGGCCTTCGAGGGCTTTGGCTTGTCCACTAGCATGACCTCGC
CGCGCAACATGGCCAAGGAGCGCCTGTCTATCATTCTTGCCCATCAACGT
CTGGCAGACGTAGATATTCAGCAGCTTCAGGCTGATGTCCTAGCGTGCGT
ACAGAAATATGTCAAGATCACACCTGAGCAAGCTGTCTCCATAAAAGTGA
AGCAAGACGGGGGTGTCGATGTGTTCGAGATGCAGATTGCCTTGGCAGGG
GCCGCTAGCAACATGACGGCTGCCAAGCGGTAAAAAGAAAAGTCCGTTGT
ATGCCGACATGTATGTGTATGAGGGAGAGAAAAAGAAAAGGACGGACAGT
AGGGAGATGTGGTAGAGGGAGGGGAGATGTAGGAAAGAGGTAATTTTTTC
GTCGATCGACCCAATAGCAGGACATCCTGTAGCCGTGCTCCGATGTATCG
AGTGTGCTGTATGCTTTTGGAAGCCGCTACTGTTCGAGCGCCAAGAGTAG
AAGGCCATACCGAGGAGGGCAACAATGCGGGGAGAGGTAGGAAAATCAAA
AAAGTGGGAGGGATGACTCACGTAGGGGGTATGCATATCGATTTTGTGTC
TCATCAACCCTACCGTCCGGAGGTTCCGGGAGGAATGGGACCCACAACTA
CCCAAAGATTTGGGTTGTCTGTTGGAGAGGAAAATTGGGCTCTCAGCGCG
TGGAATGAGTTTTACAAGTAATCTTGGCGTGTGTGGAATCGATTACTTCG
ATATTTGAAATCGTTTGCCCACTTAAAACGAATAGATCCAGGGAGATGAG
CGAGAGACGGGGAACATAAGCGCTGGGGCAGGTCTGCTACATAACAAAAA
CAAACGATGAAGGCGCAAGCCA
back to top

protein sequence of NO01G05030.1

>NO01G05030.1-protein ID=NO01G05030.1-protein|Name=NO01G05030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=122bp
MSILYLVSHDELHLTEEDLFTMRDLALRFARAFEGFGLSTSMTSPRNMAK
ERLSIILAHQRLADVDIQQLQADVLACVQKYVKITPEQAVSIKVKQDGGV
DVFEMQIALAGAASNMTAAKR*
back to top

mRNA from alignment at chr1:1336418..1338409+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05030.1 ID=NO01G05030.1|Name=NO01G05030.1|organism=Nannochloropsis oceanica|type=mRNA|length=1992bp|location=Sequence derived from alignment at chr1:1336418..1338409+ (Nannochloropsis oceanica)
GCGCAGCATGCTGCTCTTTTCTGTGGTGAGTCAGGGGAGGGAGTATTGTC
GTGTGAATGTTGTGCTTGAGTTGAGGGCCCAAACTACCGCAACCAGGAGC
GAGGGTGCCGCGGCCTCGATTACGCAGAGGCATGAGATGCTAAGGCATCC
ACGAGAGAATGCCATCCGCCGCTTCATCGTTGTACTTGCAGTGGAAATGC
TGGTATTTGTATCTCGCGTTATGATGCGAGTGGGTGCATGAGTCTAAAGG
AACATGCAAGAAGAACTGACGTGGGAGTTGAGGAAGCAAGGACGTTAAGA
GAAGGAGGAGGCTTGCCCAGAAACTGATGATGACGATGATGGCATTGCCT
CACAATGGCATGAAAATGCCGTGTGTCCTCGCAGGCAGGCATTACATCTT
AGCCTCGCCGCACGATAACATGCGTTAAGGCTTCAGAAAAGTCAAAGCGC
ACAGGGGGCGGGGCGGTCATTCAAAGGCGGCTGGGTCATCGCCAACTCTT
GCTTCGCGCAGCGAAGCATGAGCATTCTCTATCTGGTCTCACACGACGAA
CTACACCTTACAGAAGAGGACCTATTCACCATGAGAGACTTGGCCCTGCG
GTTTGCCCGGGCCTTCGAGGGCTTTGGCTTGTCCACTAGCATGACCTCGC
CGCGGTAAGTGGAAGAAGCAAGAGAATAGAGAGGACAGGAGGAGAGGGAA
AGAGAAATGAGGCGGCCATGCCAGTCCGAGCATCGCATCCTCGCATATGC
ACCCTCTAAACCCACTCAACCACACAGCAACATGGCCAAGGAGCGCCTGT
CTATCATTCTTGCCCATCAACGTCTGGCAGACGTAGATATTCAGCAGCTT
CAGGTACGTGCAGGCTGCCGCATCAACGTTATCGTCATAAGGTGTCGCAG
GATGGTAATAGCTGCATTCACATGTCATCTCACAAAAAAAACAGGCTGAT
GTCCTAGCGTGCGTACAGAAATATGTCAAGATCACACCTGAGCAAGCTGT
CTCCATAAAAGGTGCGTGTGTGTGTGAGCGGAAGGAGGCACTTTGTGGGA
GAGCCCAGCGACGAGAGTTGAACTGAGGGAGCAGCGTTTTCGTGCAGGCG
TACCATCCAGACCTGCTTTCTCTTGCGAATTTGCTTTTTCGTGTTGCTTT
GCTGTATGTCGGTCATGCCTATTTGACGGCATCGTCGTGTAATGGACTTT
CTAGCTGCACCTCCCTGTTTTCCCTCGTCCACCCTACTAGCAGTACCCAC
TCATCTCTCATCTCTTATCTCTCATCTCTAATTCTACCCGCCTCCCCACC
CCCAAACCCACCCACAGTGAAGCAAGACGGGGGTGTCGATGTGTTCGAGA
TGCAGATTGCCTTGGCAGGGGCCGCTAGCAACATGACGGCTGCCAAGCGG
TAAAAAGAAAAGTCCGTTGTATGCCGACATGTATGTGTATGAGGGAGAGA
AAAAGAAAAGGACGGACAGTAGGGAGATGTGGTAGAGGGAGGGGAGATGT
AGGAAAGAGGTAATTTTTTCGTCGATCGACCCAATAGCAGGACATCCTGT
AGCCGTGCTCCGATGTATCGAGTGTGCTGTATGCTTTTGGAAGCCGCTAC
TGTTCGAGCGCCAAGAGTAGAAGGCCATACCGAGGAGGGCAACAATGCGG
GGAGAGGTAGGAAAATCAAAAAAGTGGGAGGGATGACTCACGTAGGGGGT
ATGCATATCGATTTTGTGTCTCATCAACCCTACCGTCCGGAGGTTCCGGG
AGGAATGGGACCCACAACTACCCAAAGATTTGGGTTGTCTGTTGGAGAGG
AAAATTGGGCTCTCAGCGCGTGGAATGAGTTTTACAAGTAATCTTGGCGT
GTGTGGAATCGATTACTTCGATATTTGAAATCGTTTGCCCACTTAAAACG
AATAGATCCAGGGAGATGAGCGAGAGACGGGGAACATAAGCGCTGGGGCA
GGTCTGCTACATAACAAAAACAAACGATGAAGGCGCAAGCCA
back to top

Coding sequence (CDS) from alignment at chr1:1336418..1338409+

>NO01G05030.1 ID=NO01G05030.1|Name=NO01G05030.1|organism=Nannochloropsis oceanica|type=CDS|length=366bp|location=Sequence derived from alignment at chr1:1336418..1338409+ (Nannochloropsis oceanica)
ATGAGCATTCTCTATCTGGTCTCACACGACGAACTACACCTTACAGAAGA
GGACCTATTCACCATGAGAGACTTGGCCCTGCGGTTTGCCCGGGCCTTCG
AGGGCTTTGGCTTGTCCACTAGCATGACCTCGCCGCGCAACATGGCCAAG
GAGCGCCTGTCTATCATTCTTGCCCATCAACGTCTGGCAGACGTAGATAT
TCAGCAGCTTCAGGCTGATGTCCTAGCGTGCGTACAGAAATATGTCAAGA
TCACACCTGAGCAAGCTGTCTCCATAAAAGTGAAGCAAGACGGGGGTGTC
GATGTGTTCGAGATGCAGATTGCCTTGGCAGGGGCCGCTAGCAACATGAC
GGCTGCCAAGCGGTAA
back to top
Synonyms
Publications