NO01G04900.1, NO01G04900.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04900.1
Unique NameNO01G04900.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2784
Alignment locationchr1:1298946..1301802 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1298946..1301802 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G04900.1 vs.
Match: EWM29403.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 280.4 bits (716), Expect = 5.400e-72
Identity = 146/236 (61.86%), Postives = 177/236 (75.00%), Query Frame = 0 
Query:   19 LLPVTTFAAMLAVASATTGGDAVAYVRVTTSLYQQRRL-SLAAPFS-HSRSWITFKRGGATSNNT---EALLLPTPAFAAAEDIWNTPQGLAWTQLLLDSFEKCTGSALLQDREELDPMEQARALFLSSRVVVSHQTQEDPVLCYGNAKALALWEMDLLNLTSSPSRLTAEPVAREERQRLLDTVKAKGFIDDYHGVRISSTGKRFEILQAVVWEIYDLDGVRRGQAATFSDWNEL 250
            L P + F  ++ +++A+  G   A   +     ++    +  +P+S  S  WI  +RGGA +++    E LLLPTPAF AAE+ W TPQG+ WTQLLLDSFEK TGS LL +R+ LD  EQARALF SSRV+VSHQTQ+DPVLCYGN KALALWEMDL  LTSSPSR TAEPVAREERQRLLD V++KG+IDDY GVRISSTG RFEI++A+VWE+YD  GVRRGQAATFS+W  L
Sbjct:    6 LEPGSFFQGLVLLSAASQAGRPFAQSPICPLSREKSHFPAFCSPYSSQSCPWIITQRGGAVNHDNDTREGLLLPTPAFKAAEETWKTPQGVQWTQLLLDSFEKTTGSFLLSNRDTLDAAEQARALFFSSRVIVSHQTQQDPVLCYGNEKALALWEMDLETLTSSPSRYTAEPVAREERQRLLDEVRSKGYIDDYRGVRISSTGSRFEIVKAIVWEVYDTLGVRRGQAATFSEWRTL 241
The following BLAST results are available for this feature:
BLAST of NO01G04900.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29403.15.400e-7261.86conserved unknown protein [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04900NO01G04900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04900.1NO01G04900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04900.1.cds1NO01G04900.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04900.1.cds2NO01G04900.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04900.1 ID=NO01G04900.1|Name=NO01G04900.1|organism=Nannochloropsis oceanica|type=mRNA|length=2784bp
ACGAGTTCATATTTACTTCAGGCTAATTGCTCTGATTTCTTTGGGTCAGA
GAGGAGATGGCGGCAGTATCTAGCGAAGCGATTCGGGATCATTACCAAGG
GAGCGGATCTCTACAAAGCACGCCGCCGACCCCGGAGATGACGCCGCTAC
CCGGGGTAATGAGTGAGTTCCAAACCACCTCGTTAGATCCGCTGCCATCT
CCTCTTTAATCCTAAGAAATCAAAGCAATCGTTGGTCCCGGCTTCTCCGG
CAGGACCGCCTATAAATTTCATTATGTTTGGATCGGAGTCCACCCGGTAT
CTCCATGCTTGCTCAGACACTTACTCCTACAGTACACATACGAAAACTTG
GTAAAATACATGTTCTCCTGCATCTCAAACTCCTTGTGACACCATGAGCA
TGTCCCCATTTCTACCTCCTTCTCTTGCTTTGGCGGCGGGGTCCACCATG
CCAGTAGATCCCGCAGATTGGCTCCATTCATTCTCTCTACATCACAACGA
CTGACTTCCAAGCGCTCAAAACGAGGGGAAACATTTAAGAAAAGATGAGT
GTAACCGAAGCCGCCATATTTTTGTAACTTTATGCGGCAGTCGATGGAGT
GAGAGAGATGCAATTGGGAAGAAAATCCTTTCCTGCAGAGCCTCGAGAGG
AGACACGCCCCTTCCTCATCGGAGGGGGAGTCAACGGTTTTGAAGCCCAA
GGTGGATTCAGCACATTTTTGAACAGGGGGGGAGAGAGGGTAGAAGGCGT
TGCCATGAAAAGAGAAGGATACGTGGACACCATCAGTAAGGAGGGCATTA
TAGGCGTCTTCAAGATCTAGACGGCAAGGGCACCGACAGAAGACAATCCG
CGTCTTGTCCGCACCGTATTTTATAAGAGTAGAAAATACAGCATATATTC
TCTTTCCATCGAAAGGTGCTCGACCGAAAGCGTCTTGTGTGGTGATGAAG
ATGGGGGCACCGCTGCTTTCCCTTGAGGCATAAGCAAGGGATTGAAGGAG
AAGGTCCTCTCTCCCCTCCCTCTCTTTCTCAGGCCATATTTTGTTCAGCC
CATTGAGATCCACCAGTCCGATGAACCCCGCACCGATCCGCTCACTTGTC
GAGAGCAAAGCAGGGTTTTCCACTGCCTCCTCCTTTTCTGTTACTGCGTC
CGTCTCCCTCGTGGCTGCGGGAGGAACAAGAGGGATACCAAATCTGAGCG
TGTGAACTAAGTCTTTGCTCACGCGCTCAGGTTTGGCATCGAGTGAGATG
GGACCAGGAAGTGCGCCAGTGACAATCAGTAAATTCTTGGGCTCGAGCTT
TCGAGCCAAGCTGCGCAAGGGGGTGTAGTCGCGCGAGGTGGCAGTGGCAG
TGTGCAAAATTAGCATGGTACTGTTTTGAGCGGTGAGGCCTGGCACCGCT
AGTGCCGCCTCAAGTTCACGCTGCATCTCGTCCGCCGAGGGTAGGCGCAG
ATTCCATATATACTGATCGGGATGGCAGCGGACTTGACCTAAATTGGAGA
GGGTCAGCTCCTCTTGCTTCAACGGTGTGGCGGAGGCAGAGGCGACGGGT
GCGTCGATTACGAGGTCATTGGTACCCAGGGACAAGAGGGCGGCCGGGGG
ATCCAACGAGCTTGTCGCCGCCCTGATCATGGTGCTGTGTCCGATAGAAG
CATTGATGGAGTGCGTGAGTGCTGGCTGCGCAAGCAAAAGGGGGCATAGA
AGGCGTTGCGGCGGTGAAAAGTCGCTTCTTTTTTGGTCGTGTGCGAGGGG
CCACACAAAACGCAAATTACCAACTTAATACCACAAGGCTCACACTGGGT
TGTCAAATCCATTAAAGACACTCAAGTGATGTATAGACATTCAACTACAC
GTGTGTAGAGAGTGTACTAATGATATTCTTGGGAGCTTACCCCCCTACAC
ATCCTCACACCTCACGGCCGCAAGCACCGTTACCATTTCTAATTGTCCTC
AAATTTCCCATTAGGTATGGTCAGCCGAACAGACCGAGTCGTGAGGACCC
TGCTGCTGGTGCTGCTACTTCTTCTGCCGGTTACTACCTTTGCAGCAATG
CTCGCCGTAGCCTCCGCCACTACCGGTGGCGACGCAGTTGCCTATGTCCG
CGTCACAACTTCCTTGTACCAGCAACGTCGTTTATCACTCGCCGCCCCCT
TTTCGCATTCACGATCATGGATCACCTTCAAGCGTGGCGGTGCCACCAGC
AACAATACAGAGGCCTTATTGTTACCTACCCCTGCGTTTGCTGCCGCCGA
GGATATTTGGAACACGCCCCAGGGCTTGGCATGGACACAACTTTTGCTCG
ATTCGTTCGAAAAATGCACAGGCTCTGCTCTTCTTCAGGATAGAGAAGAA
CTCGACCCAATGGAGCAAGCCCGTGCCCTCTTCCTTTCATCTCGCGTTGT
CGTCTCACATCAGACACAGGAGGATCCTGTGCTGTGCTATGGTAACGCCA
AGGCTTTGGCGCTATGGGAAATGGACCTGTTAAATTTGACCTCGTCTCCG
TCACGGTTGACGGCCGAGCCTGTTGCCAGAGAGGAAAGGCAGCGGCTCCT
CGACACGGTCAAGGCCAAAGGATTCATTGACGATTATCATGGGGTGCGGA
TATCTTCAACAGGCAAAAGATTTGAAATCTTACAGGCGGTCGTATGGGAG
ATTTATGACTTAGATGGTGTGAGAAGAGGACAGGCCGCCACTTTCAGTGA
TTGGAATGAATTGTGAGAAGTGGAATTAGAGCTGGAAATCAGGGAAGGAA
ACCAGAAAGTAATAATCGTGAACATATTATGTTT
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protein sequence of NO01G04900.1

>NO01G04900.1-protein ID=NO01G04900.1-protein|Name=NO01G04900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=250bp
MVSRTDRVVRTLLLVLLLLLPVTTFAAMLAVASATTGGDAVAYVRVTTSL
YQQRRLSLAAPFSHSRSWITFKRGGATSNNTEALLLPTPAFAAAEDIWNT
PQGLAWTQLLLDSFEKCTGSALLQDREELDPMEQARALFLSSRVVVSHQT
QEDPVLCYGNAKALALWEMDLLNLTSSPSRLTAEPVAREERQRLLDTVKA
KGFIDDYHGVRISSTGKRFEILQAVVWEIYDLDGVRRGQAATFSDWNEL*
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mRNA from alignment at chr1:1298946..1301802-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04900.1 ID=NO01G04900.1|Name=NO01G04900.1|organism=Nannochloropsis oceanica|type=mRNA|length=2857bp|location=Sequence derived from alignment at chr1:1298946..1301802- (Nannochloropsis oceanica)
ACGAGTTCATATTTACTTCAGGCTAATTGCTCTGATTTCTTTGGGTCAGA
GAGGAGATGGCGGCAGTATCTAGCGAAGCGATTCGGGATCATTACCAAGG
GAGCGGATCTCTACAAAGCACGCCGCCGACCCCGGAGATGACGCCGCTAC
CCGGGGTAATGAGTGAGTTCCAAACCACCTCGTTAGATCCGCTGCCATCT
CCTCTTTAATCCTAAGAAATCAAAGCAATCGTTGGTCCCGGCTTCTCCGG
CAGGACCGCCTATAAATTTCATTATGTTTGGATCGGAGTCCACCCGGTAT
CTCCATGCTTGCTCAGACACTTACTCCTACAGTACACATACGAAAACTTG
GTAAAATACATGTTCTCCTGCATCTCAAACTCCTTGTGACACCATGAGCA
TGTCCCCATTTCTACCTCCTTCTCTTGCTTTGGCGGCGGGGTCCACCATG
CCAGTAGATCCCGCAGATTGGCTCCATTCATTCTCTCTACATCACAACGA
CTGACTTCCAAGCGCTCAAAACGAGGGGAAACATTTAAGAAAAGATGAGT
GTAACCGAAGCCGCCATATTTTTGTAACTTTATGCGGCAGTCGATGGAGT
GAGAGAGATGCAATTGGGAAGAAAATCCTTTCCTGCAGAGCCTCGAGAGG
AGACACGCCCCTTCCTCATCGGAGGGGGAGTCAACGGTTTTGAAGCCCAA
GGTGGATTCAGCACATTTTTGAACAGGGGGGGAGAGAGGGTAGAAGGCGT
TGCCATGAAAAGAGAAGGATACGTGGACACCATCAGTAAGGAGGGCATTA
TAGGCGTCTTCAAGATCTAGACGGCAAGGGCACCGACAGAAGACAATCCG
CGTCTTGTCCGCACCGTATTTTATAAGAGTAGAAAATACAGCATATATTC
TCTTTCCATCGAAAGGTGCTCGACCGAAAGCGTCTTGTGTGGTGATGAAG
ATGGGGGCACCGCTGCTTTCCCTTGAGGCATAAGCAAGGGATTGAAGGAG
AAGGTCCTCTCTCCCCTCCCTCTCTTTCTCAGGCCATATTTTGTTCAGCC
CATTGAGATCCACCAGTCCGATGAACCCCGCACCGATCCGCTCACTTGTC
GAGAGCAAAGCAGGGTTTTCCACTGCCTCCTCCTTTTCTGTTACTGCGTC
CGTCTCCCTCGTGGCTGCGGGAGGAACAAGAGGGATACCAAATCTGAGCG
TGTGAACTAAGTCTTTGCTCACGCGCTCAGGTTTGGCATCGAGTGAGATG
GGACCAGGAAGTGCGCCAGTGACAATCAGTAAATTCTTGGGCTCGAGCTT
TCGAGCCAAGCTGCGCAAGGGGGTGTAGTCGCGCGAGGTGGCAGTGGCAG
TGTGCAAAATTAGCATGGTACTGTTTTGAGCGGTGAGGCCTGGCACCGCT
AGTGCCGCCTCAAGTTCACGCTGCATCTCGTCCGCCGAGGGTAGGCGCAG
ATTCCATATATACTGATCGGGATGGCAGCGGACTTGACCTAAATTGGAGA
GGGTCAGCTCCTCTTGCTTCAACGGTGTGGCGGAGGCAGAGGCGACGGGT
GCGTCGATTACGAGGTCATTGGTACCCAGGGACAAGAGGGCGGCCGGGGG
ATCCAACGAGCTTGTCGCCGCCCTGATCATGGTGCTGTGTCCGATAGAAG
CATTGATGGAGTGCGTGAGTGCTGGCTGCGCAAGCAAAAGGGGGCATAGA
AGGCGTTGCGGCGGTGAAAAGTCGCTTCTTTTTTGGTCGTGTGCGAGGGG
CCACACAAAACGCAAATTACCAACTTAATACCACAAGGCTCACACTGGGT
TGTCAAATCCATTAAAGACACTCAAGTGATGTATAGACATTCAACTACAC
GTGTGTAGAGAGTGTACTAATGATATTCTTGGGAGCTTACCCCCCTACAC
ATCCTCACACCTCACGGCCGCAAGCACCGTTACCATTTCTAATTGTCCTC
AAATTTCCCATTAGGTATGGTCAGCCGAACAGACCGAGTCGTGAGGACCC
TGCTGCTGGTGCTGCTACTTCTTCTGCCGGTTACTACCTTTGCAGCAATG
CTCGCCGTAGCCTCCGCCACTACCGGTGGCGACGCAGTTGCCTATGTCCG
CGTCACAACTTCCTTGTACCAGCAACGTCGTTTATCACTCGCCGCCCCCT
TTTCGCATTCACGATCATGGATCACCTTCAAGGTATGGTAGACTCATCCT
CCTCCTCTTTCAACGAGAAGCTCATCGACTTCCCCTCGTATCCAACGTTC
ACAAGCGTGGCGGTGCCACCAGCAACAATACAGAGGCCTTATTGTTACCT
ACCCCTGCGTTTGCTGCCGCCGAGGATATTTGGAACACGCCCCAGGGCTT
GGCATGGACACAACTTTTGCTCGATTCGTTCGAAAAATGCACAGGCTCTG
CTCTTCTTCAGGATAGAGAAGAACTCGACCCAATGGAGCAAGCCCGTGCC
CTCTTCCTTTCATCTCGCGTTGTCGTCTCACATCAGACACAGGAGGATCC
TGTGCTGTGCTATGGTAACGCCAAGGCTTTGGCGCTATGGGAAATGGACC
TGTTAAATTTGACCTCGTCTCCGTCACGGTTGACGGCCGAGCCTGTTGCC
AGAGAGGAAAGGCAGCGGCTCCTCGACACGGTCAAGGCCAAAGGATTCAT
TGACGATTATCATGGGGTGCGGATATCTTCAACAGGCAAAAGATTTGAAA
TCTTACAGGCGGTCGTATGGGAGATTTATGACTTAGATGGTGTGAGAAGA
GGACAGGCCGCCACTTTCAGTGATTGGAATGAATTGTGAGAAGTGGAATT
AGAGCTGGAAATCAGGGAAGGAAACCAGAAAGTAATAATCGTGAACATAT
TATGTTT
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Coding sequence (CDS) from alignment at chr1:1298946..1301802-

>NO01G04900.1 ID=NO01G04900.1|Name=NO01G04900.1|organism=Nannochloropsis oceanica|type=CDS|length=750bp|location=Sequence derived from alignment at chr1:1298946..1301802- (Nannochloropsis oceanica)
ATGGTCAGCCGAACAGACCGAGTCGTGAGGACCCTGCTGCTGGTGCTGCT
ACTTCTTCTGCCGGTTACTACCTTTGCAGCAATGCTCGCCGTAGCCTCCG
CCACTACCGGTGGCGACGCAGTTGCCTATGTCCGCGTCACAACTTCCTTG
TACCAGCAACGTCGTTTATCACTCGCCGCCCCCTTTTCGCATTCACGATC
ATGGATCACCTTCAAGCGTGGCGGTGCCACCAGCAACAATACAGAGGCCT
TATTGTTACCTACCCCTGCGTTTGCTGCCGCCGAGGATATTTGGAACACG
CCCCAGGGCTTGGCATGGACACAACTTTTGCTCGATTCGTTCGAAAAATG
CACAGGCTCTGCTCTTCTTCAGGATAGAGAAGAACTCGACCCAATGGAGC
AAGCCCGTGCCCTCTTCCTTTCATCTCGCGTTGTCGTCTCACATCAGACA
CAGGAGGATCCTGTGCTGTGCTATGGTAACGCCAAGGCTTTGGCGCTATG
GGAAATGGACCTGTTAAATTTGACCTCGTCTCCGTCACGGTTGACGGCCG
AGCCTGTTGCCAGAGAGGAAAGGCAGCGGCTCCTCGACACGGTCAAGGCC
AAAGGATTCATTGACGATTATCATGGGGTGCGGATATCTTCAACAGGCAA
AAGATTTGAAATCTTACAGGCGGTCGTATGGGAGATTTATGACTTAGATG
GTGTGAGAAGAGGACAGGCCGCCACTTTCAGTGATTGGAATGAATTGTGA
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Synonyms
Publications