NO01G04880.1, NO01G04880.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G04880.1
Unique Name	NO01G04880.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2173
Alignment location	chr1:1289986..1292497 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:1289986..1292497 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO01G04880.1 vs.
Match: EWM29406.1 (aureochrome1-like protein [Nannochloropsis gaditana])

HSP 1 Score: 601.3 bits (1549), Expect = 2.700e-168
Identity = 352/496 (70.97%), Postives = 393/496 (79.23%), Query Frame = 0

Query:    1 MSPTTMQSQSTVTPAISGPEPTSWGIFSRSNSNVNLAGEAGGSDPALLVKQEDTLAPGPTWTAPLYASANGNNYVSGDMVDLNEIFAGDFLLPGVG-VSCSDEEMFGAEDMFP---------EENDNDGSTATGREVRGKGKGQKIVFRQTVAAAAAEEKGDGQAAATVRQAATRTRSGITTRLGGGRGEGQIK--AAAMLPSAAPARATASHSRRTKPLTKKQQQQQAAAAEEEEEEEEEEYETGSEDE-EGGDGSGRGRRKKAKLTLKPLTEAQRVERRERNREHAKRSRMRKKFMLESLQAQMLALRKENLRLRQLVSTKIPEKADHILRGCSSIKTQAMLSSVELGHHRALADNDGKLISALQFAQQNFTVSDPSLPDNPIVYASQGFLDLTGYSSDQVVGRNCRFLQGPGTDPAAVDIIRRGVALGEDTSVCLLNYRADGTPFWNQFFVAALRDSEGNIVNHVGVQCKVEEAPMEEELKERVKTINFDEEE 484
            MS TTMQ Q+    AI   +PTSWGI SR+NS+ +LAGEAGG +    +KQE   A  P WTAPLYASAN +N ++ D VDL+EIFA DFLLPG+G V    E   G EDMFP           NDND S A    + GKGKG +  F         E+K + +AAA VR AA+RTRSGITTRLG  +G+G+    A++MLPSA P+RA     + + P+ +          EE+ EEEEEEYETGSE+E EGGDG G  RRKKAKLTLKPLTEAQRVERRERNREHAKRSRMRKKFMLESLQAQMLALRKENLRLRQLV+TK+P+KAD ILRGCSSIKTQ +LSSVELGHHRALAD+DG+L+SALQFAQQNFTVSDPSLPDNPI+YASQGFLDLTGY+SDQ+VGRNCRFLQGPGTDPAAVDIIRRGVALGEDTSVCLLNYRADGTPFWNQFFVAALRD EGNIVN+VGVQCKVEEAPMEEELKERVKTINFDEEE
Sbjct:    1 MSTTTMQQQAPTMAAIQ--QPTSWGILSRNNSSTDLAGEAGGLEAPDQIKQE---AAAPLWTAPLYASANNSNPMA-DTVDLDEIFADDFLLPGMGMVPFGTEGDMGPEDMFPGGLSCDTSVATNDNDDS-AVASGMHGKGKGAQ--FANAAPQGKTEDKTNVRAAAVVRSAASRTRSGITTRLGLNKGQGRAVTGASSMLPSAVPSRARVPTRKGSLPVEE----------EEDVEEEEEEYETGSEEEGEGGDGRGARRRKKAKLTLKPLTEAQRVERRERNREHAKRSRMRKKFMLESLQAQMLALRKENLRLRQLVATKLPDKADTILRGCSSIKTQNLLSSVELGHHRALADHDGRLVSALQFAQQNFTVSDPSLPDNPIIYASQGFLDLTGYTSDQIVGRNCRFLQGPGTDPAAVDIIRRGVALGEDTSVCLLNYRADGTPFWNQFFVAALRDMEGNIVNYVGVQCKVEEAPMEEELKERVKTINFDEEE 477

The following BLAST results are available for this feature:

BLAST of NO01G04880.1 vs.

BLAST of NO01G04880.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29406.1	2.700e-168	70.97	aureochrome1-like protein [Nannochloropsis gaditan...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO01G04880	NO01G04880	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO01G04880.1	NO01G04880.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO01G04880.1.cds1	NO01G04880.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G04880.1.cds2	NO01G04880.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G04880.1.cds3	NO01G04880.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:1289986..1292497-
coding sequence from alignment at chr1:1289986..1292497-

mRNA sequence

>NO01G04880.1 ID=NO01G04880.1|Name=NO01G04880.1|organism=Nannochloropsis oceanica|type=mRNA|length=2173bp
ACAGCACACAACAACTACGCATACCCCTGTCTTTGTTTTTCCCCCTGCTC
GAAGATCGTTGACGATCCAAGCAGGGGCAAGCACGCACGCGTCGCCTACG
TCCTACTACCATTGGAACTCATCCGCGGCGTCAGTAAATGTCACCCACGA
CCATGCAGTCGCAGTCAACAGTCACGCCTGCCATCTCTGGGCCCGAGCCC
ACGAGCTGGGGCATTTTTTCCCGCAGTAATAGCAACGTTAATTTGGCTGG
AGAAGCAGGCGGGAGCGACCCGGCTCTCCTTGTGAAGCAAGAGGACACGT
TGGCACCTGGGCCCACCTGGACTGCCCCTCTCTACGCCTCGGCCAATGGC
AACAATTATGTGTCAGGGGACATGGTCGACCTCAATGAGATCTTCGCCGG
CGATTTCCTTCTGCCTGGCGTGGGCGTTTCCTGCAGTGACGAAGAGATGT
TTGGGGCCGAGGACATGTTTCCCGAAGAAAATGACAATGACGGCTCCACC
GCCACAGGAAGAGAAGTGCGCGGCAAGGGTAAAGGACAGAAGATAGTATT
CAGGCAAACAGTTGCAGCAGCAGCAGCTGAGGAGAAGGGAGATGGTCAAG
CAGCGGCAACGGTCCGGCAGGCCGCCACTAGGACGAGGAGTGGGATCACG
ACACGCTTAGGAGGAGGGAGGGGGGAGGGTCAAATCAAGGCCGCGGCGAT
GTTGCCCTCCGCCGCTCCAGCTCGTGCCACAGCTTCGCACTCTCGTCGTA
CCAAGCCTCTGACAAAGAAGCAGCAGCAGCAGCAGGCAGCGGCGGCAGAG
GAGGAGGAGGAGGAGGAAGAAGAAGAGTACGAGACGGGAAGCGAAGACGA
GGAAGGGGGGGATGGGTCGGGAAGGGGGAGACGGAAGAAAGCTAAGCTGA
CATTGAAGCCCTTGACGGAGGCCCAGCGCGTGGAACGAAGGGAGCGGAAC
CGAGAGCACGCCAAGCGGTCCCGTATGCGCAAGAAGTTCATGCTTGAATC
CTTGCAAGCCCAAATGCTTGCCTTGCGGAAGGAAAACCTCCGCCTCCGCC
AGCTGGTGTCCACCAAAATCCCCGAAAAAGCCGACCACATTCTCCGGGGC
TGCTCCTCAATCAAGACCCAAGCCATGCTCTCCTCAGTCGAGCTCGGGCA
CCATCGTGCACTTGCCGACAACGACGGGAAACTCATCTCAGCCCTGCAAT
TTGCGCAGCAGAATTTCACTGTATCCGACCCCTCCCTGCCTGATAATCCT
ATCGTCTACGCCTCCCAGGGTTTCCTCGACCTGACCGGGTACTCATCAGA
TCAGGTCGTGGGCCGCAACTGCCGCTTCCTGCAAGGGCCAGGCACTGACC
CTGCAGCCGTAGATATTATCAGGAGAGGGGTGGCGTTGGGGGAGGACACG
AGCGTGTGTCTGTTGAACTACAGGGCGGATGGCACGCCGTTTTGGAACCA
ATTCTTCGTTGCGGCGTTGAGGGATTCGGAGGGGAATATCGTCAATCACG
TGGGAGTGCAGTGTAAGGTGGAGGAGGCGCCCATGGAGGAGGAACTGAAG
GAGAGGGTCAAGACGATTAATTTTGATGAAGAGGAATGAGAGGAAGGATA
AAGAGGGGAAGAGGAGGAGGAGGAGAAGAAGATGTAAAGTGTTTTTTACC
ATGTGTTTTTTTTCCTTGTGTAATAGAATGAGATGGGAAATTGGGCTGTG
GTCTTTACCAGCGCACCTCAAGTGCGTGACAAAGAACGACAAAAAAAACC
AGCAGCAGCAGCAATAGCAGCGGCAGCAACACAACTTCCCCCAAAACAGG
CGCAAGACGCAAGAAGACTACGTATCCCTAAAGCGGAAAATGAGGCGTCA
GATAAAACGCAACCGCAAGCATGCGCGAAGTGTATGCGGAAAAACAAGTC
GGAGAGAAATAGTACGTGTGTTGGAAAAATGAAGCGGCAGAGTAGTGGGG
AGAAAGAGAAACGCCGTATCAAGACAAGAATTAGCTGGGTGGCATTGTGT
CATTCATTCACACGAAGACATGTCAGGAAGAAAGCCCGGGCACGCATCAG
CCAGAGACAAAAAATCGACATGAGAAGGAGTTGAGAGCTAGGCTGCCCCA
ATCTACGGTGCGGCACGGATCTAATGATAAAAAAGAGGAATAAGGAAAGA
AAAAAATCCAATACGTTTAGACA

protein sequence of NO01G04880.1

>NO01G04880.1-protein ID=NO01G04880.1-protein|Name=NO01G04880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=484bp
MSPTTMQSQSTVTPAISGPEPTSWGIFSRSNSNVNLAGEAGGSDPALLVK
QEDTLAPGPTWTAPLYASANGNNYVSGDMVDLNEIFAGDFLLPGVGVSCS
DEEMFGAEDMFPEENDNDGSTATGREVRGKGKGQKIVFRQTVAAAAAEEK
GDGQAAATVRQAATRTRSGITTRLGGGRGEGQIKAAAMLPSAAPARATAS
HSRRTKPLTKKQQQQQAAAAEEEEEEEEEEYETGSEDEEGGDGSGRGRRK
KAKLTLKPLTEAQRVERRERNREHAKRSRMRKKFMLESLQAQMLALRKEN
LRLRQLVSTKIPEKADHILRGCSSIKTQAMLSSVELGHHRALADNDGKLI
SALQFAQQNFTVSDPSLPDNPIVYASQGFLDLTGYSSDQVVGRNCRFLQG
PGTDPAAVDIIRRGVALGEDTSVCLLNYRADGTPFWNQFFVAALRDSEGN
IVNHVGVQCKVEEAPMEEELKERVKTINFDEEE*

mRNA from alignment at chr1:1289986..1292497-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO01G04880.1 ID=NO01G04880.1|Name=NO01G04880.1|organism=Nannochloropsis oceanica|type=mRNA|length=2512bp|location=Sequence derived from alignment at chr1:1289986..1292497- (Nannochloropsis oceanica)
ACAGCACACAACAACTACGCATACCCCTGTCTTTGTTTTTCCCCCTGCTC
GAAGATCGTTGACGATCCAAGCAGGGGCAAGCACGCACGCGTCGCCTACG
TCCTACTACCATTGGAACTCATCCGCGGCGTCAGTAAATGTCACCCACGA
CCATGCAGTCGCAGTCAACAGTCACGCCTGCCATCTCTGGGCCCGAGCCC
ACGAGCTGGGGCATTTTTTCCCGCAGTAATAGCAACGTTAATTTGGCTGG
AGAAGCAGGCGGGAGCGACCCGGCTCTCCTTGTGAAGCAAGAGGACACGT
TGGCACCTGGGCCCACCTGGACTGCCCCTCTCTACGCCTCGGCCAATGGC
AACAATTATGTGTCAGGGGACATGGTCGACCTCAATGAGATCTTCGCCGG
TACGTACGTACGAGAGTGGGATGACGGGCTCGGTTTTGCGGAGGTGAGCA
AGGGAGGGGGCAGAGGTGTCACGTCCCTCCCTCGCTTCAATGCCGTCACA
AGGACGTCAGCGTGCCATTTCATTGTAGGGAAAATGAAAGGAAAAATCGA
AGCATTTCAAATCAATTCCCACTTTCCCCTTCCTCTCATCCATACTTCCC
TCCTTTTTCACACAGGCGATTTCCTTCTGCCTGGCGTGGGCGTTTCCTGC
AGTGACGAAGAGATGTTTGGGGCCGAGGACATGTTTCCCGAAGAAAATGA
CAATGACGGCTCCACCGCCACAGGAAGAGAAGTGCGCGGCAAGGGTAAAG
GACAGAAGATAGTATTCAGGCAAACAGTTGCAGCAGCAGCAGCTGAGGAG
AAGGGAGATGGTCAAGCAGCGGCAACGGTCCGGCAGGCCGCCACTAGGAC
GAGGAGTGGGATCACGACACGCTTAGGAGGAGGGAGGGGGGAGGGTCAAA
TCAAGGCCGCGGCGATGTTGCCCTCCGCCGCTCCAGCTCGTGCCACAGCT
TCGCACTCTCGTCGTACCAAGCCTCTGACAAAGAAGCAGCAGCAGCAGCA
GGCAGCGGCGGCAGAGGAGGAGGAGGAGGAGGAAGAAGAAGAGTACGAGA
CGGGAAGCGAAGACGAGGAAGGGGGGGATGGGTCGGGAAGGGGGAGACGG
AAGAAAGCTAAGCTGACATTGAAGCCCTTGACGGAGGCCCAGCGCGTGGA
ACGAAGGGAGCGGAACCGAGAGCACGCCAAGCGGTCCCGTATGCGCAAGA
AGTTCATGCTTGAATCCTTGCAAGCCCAAATGCTTGCCTTGCGGAAGGAA
AACCTCCGCCTCCGCCAGCTGGTGTCCACCAAAATCCCCGAAAAAGCCGA
CCACATTCTCCGGGGCTGCTCCTCAATCAAGACCCAAGCCATGCTCTCCT
CAGTCGAGCTCGGGCACCATCGTGCACTTGCCGACAACGACGGGAAACTC
ATCTCAGCCCTGCAATTTGCGCAGCAGAATTTCACTGTATCCGACCCCTC
CCTGCCTGATAATCGTAAGTCCTCTCTCCCTCCCTTCCTCGCTCCATTTC
TTTCCTCCCTCCTTCCCCCACCACCCATAACCATGCACTCACATTTCTAT
CTCTCCTTCCCTCCCTCCCTCCTTCTCTCCCGAACAGCTATCGTCTACGC
CTCCCAGGGTTTCCTCGACCTGACCGGGTACTCATCAGATCAGGTCGTGG
GCCGCAACTGCCGCTTCCTGCAAGGGCCAGGCACTGACCCTGCAGCCGTA
GATATTATCAGGAGAGGGGTGGCGTTGGGGGAGGACACGAGCGTGTGTCT
GTTGAACTACAGGGCGGATGGCACGCCGTTTTGGAACCAATTCTTCGTTG
CGGCGTTGAGGGATTCGGAGGGGAATATCGTCAATCACGTGGGAGTGCAG
TGTAAGGTGGAGGAGGCGCCCATGGAGGAGGAACTGAAGGAGAGGGTCAA
GACGATTAATTTTGATGAAGAGGAATGAGAGGAAGGATAAAGAGGGGAAG
AGGAGGAGGAGGAGAAGAAGATGTAAAGTGTTTTTTACCATGTGTTTTTT
TTCCTTGTGTAATAGAATGAGATGGGAAATTGGGCTGTGGTCTTTACCAG
CGCACCTCAAGTGCGTGACAAAGAACGACAAAAAAAACCAGCAGCAGCAG
CAATAGCAGCGGCAGCAACACAACTTCCCCCAAAACAGGCGCAAGACGCA
AGAAGACTACGTATCCCTAAAGCGGAAAATGAGGCGTCAGATAAAACGCA
ACCGCAAGCATGCGCGAAGTGTATGCGGAAAAACAAGTCGGAGAGAAATA
GTACGTGTGTTGGAAAAATGAAGCGGCAGAGTAGTGGGGAGAAAGAGAAA
CGCCGTATCAAGACAAGAATTAGCTGGGTGGCATTGTGTCATTCATTCAC
ACGAAGACATGTCAGGAAGAAAGCCCGGGCACGCATCAGCCAGAGACAAA
AAATCGACATGAGAAGGAGTTGAGAGCTAGGCTGCCCCAATCTACGGTGC
GGCACGGATCTAATGATAAAAAAGAGGAATAAGGAAAGAAAAAAATCCAA
TACGTTTAGACA

Coding sequence (CDS) from alignment at chr1:1289986..1292497-

>NO01G04880.1 ID=NO01G04880.1|Name=NO01G04880.1|organism=Nannochloropsis oceanica|type=CDS|length=1452bp|location=Sequence derived from alignment at chr1:1289986..1292497- (Nannochloropsis oceanica)
ATGTCACCCACGACCATGCAGTCGCAGTCAACAGTCACGCCTGCCATCTC
TGGGCCCGAGCCCACGAGCTGGGGCATTTTTTCCCGCAGTAATAGCAACG
TTAATTTGGCTGGAGAAGCAGGCGGGAGCGACCCGGCTCTCCTTGTGAAG
CAAGAGGACACGTTGGCACCTGGGCCCACCTGGACTGCCCCTCTCTACGC
CTCGGCCAATGGCAACAATTATGTGTCAGGGGACATGGTCGACCTCAATG
AGATCTTCGCCGGCGATTTCCTTCTGCCTGGCGTGGGCGTTTCCTGCAGT
GACGAAGAGATGTTTGGGGCCGAGGACATGTTTCCCGAAGAAAATGACAA
TGACGGCTCCACCGCCACAGGAAGAGAAGTGCGCGGCAAGGGTAAAGGAC
AGAAGATAGTATTCAGGCAAACAGTTGCAGCAGCAGCAGCTGAGGAGAAG
GGAGATGGTCAAGCAGCGGCAACGGTCCGGCAGGCCGCCACTAGGACGAG
GAGTGGGATCACGACACGCTTAGGAGGAGGGAGGGGGGAGGGTCAAATCA
AGGCCGCGGCGATGTTGCCCTCCGCCGCTCCAGCTCGTGCCACAGCTTCG
CACTCTCGTCGTACCAAGCCTCTGACAAAGAAGCAGCAGCAGCAGCAGGC
AGCGGCGGCAGAGGAGGAGGAGGAGGAGGAAGAAGAAGAGTACGAGACGG
GAAGCGAAGACGAGGAAGGGGGGGATGGGTCGGGAAGGGGGAGACGGAAG
AAAGCTAAGCTGACATTGAAGCCCTTGACGGAGGCCCAGCGCGTGGAACG
AAGGGAGCGGAACCGAGAGCACGCCAAGCGGTCCCGTATGCGCAAGAAGT
TCATGCTTGAATCCTTGCAAGCCCAAATGCTTGCCTTGCGGAAGGAAAAC
CTCCGCCTCCGCCAGCTGGTGTCCACCAAAATCCCCGAAAAAGCCGACCA
CATTCTCCGGGGCTGCTCCTCAATCAAGACCCAAGCCATGCTCTCCTCAG
TCGAGCTCGGGCACCATCGTGCACTTGCCGACAACGACGGGAAACTCATC
TCAGCCCTGCAATTTGCGCAGCAGAATTTCACTGTATCCGACCCCTCCCT
GCCTGATAATCCTATCGTCTACGCCTCCCAGGGTTTCCTCGACCTGACCG
GGTACTCATCAGATCAGGTCGTGGGCCGCAACTGCCGCTTCCTGCAAGGG
CCAGGCACTGACCCTGCAGCCGTAGATATTATCAGGAGAGGGGTGGCGTT
GGGGGAGGACACGAGCGTGTGTCTGTTGAACTACAGGGCGGATGGCACGC
CGTTTTGGAACCAATTCTTCGTTGCGGCGTTGAGGGATTCGGAGGGGAAT
ATCGTCAATCACGTGGGAGTGCAGTGTAAGGTGGAGGAGGCGCCCATGGA
GGAGGAACTGAAGGAGAGGGTCAAGACGATTAATTTTGATGAAGAGGAAT
GA

Synonyms

Publications