NO01G04870.1, NO01G04870.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04870.1
Unique NameNO01G04870.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2235
Alignment locationchr1:1286875..1289109 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1286875..1289109 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G04870.1 vs.
Match: EWM29393.1 (N2227-like domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 395.2 bits (1014), Expect = 3.600e-106
Identity = 267/608 (43.91%), Postives = 338/608 (55.59%), Query Frame = 0 
Query:   18 SGSSSAGSRRTLFLVMLMLVVLGVLLSTALFVLRTKQQQQQRQDQRQQWEHRQYCEDVKPPLSSVPVFFTAGVTAETQRAAYSTLKGTLEQYRSELGLRINALHNMTYVRLPGWQEEEDDGEEEEEEEEEEEEEEEEEEEKHAGLRSKARANLTASLQARMWKEFEKIPACWQQNEDLLTLLLRFPKPTSAL-----LPAAQGTP-----------KQRPKQRQKEQSTSVTPTSSSYNDAIQIFTHLYRDWTDDGRELRRKTYMPILRAAARLFQPSSPSMARNDGMVDAIEIKYILVPGAGLGRLAFELAFGQ-RPSQQLQPCFHVTAMDISPVMIAATAAVLDVVF---------ASKTEEGEEGRGGKE--GANFFYPFLHDPLLNQRSHARRFHAASFPDTAAVNQL---QSHRMKGKQRHHATSFFSSSSSTSSSSSSSSSASLPSSSLALELGNFLHLPLHSSSSWSQSQHAIITCYFLDTAPNPLSYLRTIHSLLKEGGYWINLGPLNYHTTLPNGAVQLTVEEIEIAAEGMGFRKIKEGEDEDGEEEEGQLEWCAYRPEPPRVGGKEGEGEGGREEGSAFLRVDVYKPVMSIFQRIKTR 595
            S + +AG R  L L+ ++ V L     T+ F L  +    Q+     +   R +  D    L   P+F+T+G+T ETQ+AA+STLK   E YR ELG+R+ ALH+M Y  LPGW   EDD +EE+E        ++ +         K  A++T  LQARMW+ F KIP CWQ NEDLL  LLR P P  AL     +P +  TP              P    +   T     S +Y DA+QIFTHLYRDWT DG+++RRKTY PIL    RLF         + G +      +ILVPGAGLGRLAF+LA+G+  P  Q +   HVTAMD+SP M+AAT AVL VV           S T  GE  R  K+  G   F+PFLHDPLLNQR+H  RF+AASFPD  A+  L      R    +R   ++ F                  P SSLALELG+FL L      +W  SQ A++TC+FLDTAPNPL+YLR +  LL+ GGYWINLGPLNYH TLP GA+QLT+EE+E  AE +G RK             G LE CAYRP PP       EG    E+  AFLRVD+Y+P +S+FQ++  R
Sbjct:   50 SNADTAGIR--LILLAVIFVFLSKFFLTSKFRLPWQCHYPQKDGDLPKQPQRPFYRDEGSLLPMPPLFYTSGITVETQKAAHSTLKSVAENYRVELGIRMKALHDMVYKHLPGW---EDDNQEEKEGAHGTCMNKDRQ--------PKRLADVTEDLQARMWEHFLKIPPCWQDNEDLLEDLLRLPTPVYALPSHEQVPRSYRTPCSSINLNTSFSSSPPLYSARANETHSRSPSGAYTDAMQIFTHLYRDWTQDGQDVRRKTYFPILETVNRLFSADQRLRDPSQGEI------HILVPGAGLGRLAFDLAYGEHEPKNQAR---HVTAMDMSPAMVAATWAVLGVVLDAAVGEQMGTSDTRRGESERREKDEVGGRVFHPFLHDPLLNQRTHVHRFYAASFPDKEAIQLLVCCLRRRSPPLERMPGSTLFH-----------------PCSSLALELGDFLQLA--HVPAWRTSQDAVVTCFFLDTAPNPLAYLRVVDRLLRPGGYWINLGPLNYHHTLPQGALQLTLEELESVAEALGLRK--------QASTSGPLERCAYRPHPPLT----PEGFACAEQ-EAFLRVDMYQPELSVFQKVSAR 603
The following BLAST results are available for this feature:
BLAST of NO01G04870.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29393.13.600e-10643.91N2227-like domain-containing protein [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04870NO01G04870Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04870.1NO01G04870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04870.1.cds1NO01G04870.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04870.1 ID=NO01G04870.1|Name=NO01G04870.1|organism=Nannochloropsis oceanica|type=mRNA|length=2235bp
ACTACAGAGCAATAACCCATGTTGACTCATTCATGAGCGCTCCTACTACT
TCTATTCCCATCGTGATGCCCCACTTCACGAGCAGTGGCAGTAGCAGTGC
TGGCAGTCGTCGGACCTTGTTCCTGGTCATGCTGATGCTGGTTGTCCTCG
GTGTGCTGCTCTCCACCGCCCTCTTTGTCCTACGAACGAAGCAACAACAG
CAGCAGAGACAAGATCAGCGGCAGCAATGGGAGCATCGGCAATACTGCGA
GGACGTAAAGCCCCCCCTTTCAAGCGTGCCTGTCTTCTTCACAGCCGGGG
TCACGGCGGAGACGCAACGTGCAGCTTACTCTACTTTGAAAGGGACTTTG
GAACAATACCGGTCGGAATTAGGATTGAGAATAAATGCACTGCATAACAT
GACTTATGTGCGGCTGCCGGGATGGCAGGAAGAGGAAGATGATGGGGAGG
AGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAG
GAAAAGCATGCCGGCCTTCGGTCGAAGGCGAGAGCTAATTTGACAGCGAG
TTTGCAAGCACGAATGTGGAAAGAATTCGAGAAAATTCCTGCGTGCTGGC
AACAAAATGAGGACCTCTTAACCCTACTCCTACGTTTTCCTAAGCCGACC
TCTGCCTTGTTACCCGCGGCCCAAGGAACGCCAAAGCAACGACCTAAACA
ACGACAAAAAGAGCAATCGACATCTGTAACACCTACTAGCAGCTCATATA
ACGATGCCATCCAAATCTTTACTCACCTCTATCGAGATTGGACGGATGAC
GGCCGTGAGCTCCGCCGCAAGACCTACATGCCCATCCTCCGAGCCGCTGC
TCGTTTATTCCAACCATCCTCGCCAAGCATGGCACGGAATGATGGCATGG
TGGATGCGATAGAGATAAAGTATATTTTGGTTCCAGGCGCAGGCCTAGGT
CGTCTGGCGTTCGAGCTTGCTTTTGGTCAGCGGCCCTCGCAGCAGCTGCA
GCCGTGCTTCCATGTCACGGCTATGGATATCAGCCCTGTCATGATCGCAG
CGACGGCGGCTGTGTTAGATGTTGTATTTGCATCAAAGACGGAGGAGGGA
GAGGAGGGGAGAGGAGGGAAAGAGGGCGCAAATTTCTTTTATCCCTTTTT
GCATGATCCCCTTCTGAATCAGCGTTCGCATGCTCGTCGCTTCCACGCCG
CGTCTTTCCCCGATACGGCAGCTGTGAATCAACTTCAGTCGCATCGAATG
AAAGGAAAACAAAGACATCATGCCACGTCCTTCTTCTCCTCCTCCTCCTC
CACCTCCTCCTCCTCCTCCTCCTCCTCCTCGGCCTCCTTGCCCTCCTCTT
CCCTCGCCCTCGAACTCGGCAACTTCCTCCACCTCCCCCTCCACTCGTCC
TCCTCGTGGTCCCAATCCCAACACGCAATAATCACCTGCTATTTCCTCGA
TACAGCCCCGAACCCTCTCTCCTACCTACGCACTATTCACTCCCTCCTCA
AGGAGGGGGGGTATTGGATCAATCTCGGCCCTCTTAACTACCACACTACT
CTCCCCAACGGCGCCGTGCAACTGACGGTGGAGGAAATAGAAATAGCAGC
GGAAGGAATGGGTTTCCGGAAGATCAAGGAGGGCGAGGACGAGGACGGGG
AGGAGGAGGAGGGACAGCTGGAATGGTGTGCATATCGGCCAGAGCCTCCG
AGGGTGGGAGGGAAGGAGGGGGAGGGAGAGGGAGGGAGGGAGGAAGGATC
AGCATTTTTGCGTGTAGATGTGTACAAGCCGGTCATGAGTATATTTCAGA
GGATAAAAACGAGGTAGCGACTGCCTTACATGTGACAAGTAAATAGACAG
TGAGACAGAAGGGGAAAATATAGAAGAAATGAAAGGTTCAAGTCACAAAG
CCGAAAGTAAGAGCGACGATAATAAAATGTCTAACGAACTGTAAGGGATG
CCTCGAACGAGTAAGTCGGTCAATGTCTCCCCAGAAGGGACAAGAAATAT
ACACTTGATCCCCTCTTAGACGATTTTTTCATGTTTTCTTTTTCGTTCGT
TTTTGTTTTACTCCCTGATTTATCATTAGTAGTTTAACTACGTGTGTGTA
TGTGTGACATATCACCTGAAAATAAAGCTATCTTCTTGTCTTTATGCTGC
TTCACGAAAATATTTGTGTGAAACGCTGCAGTCGCTCACTGCATTAACAA
CACACATCCGACCTACCACAATCCCCCACCCTCCC
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protein sequence of NO01G04870.1

>NO01G04870.1-protein ID=NO01G04870.1-protein|Name=NO01G04870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=595bp
MSAPTTSIPIVMPHFTSSGSSSAGSRRTLFLVMLMLVVLGVLLSTALFVL
RTKQQQQQRQDQRQQWEHRQYCEDVKPPLSSVPVFFTAGVTAETQRAAYS
TLKGTLEQYRSELGLRINALHNMTYVRLPGWQEEEDDGEEEEEEEEEEEE
EEEEEEEKHAGLRSKARANLTASLQARMWKEFEKIPACWQQNEDLLTLLL
RFPKPTSALLPAAQGTPKQRPKQRQKEQSTSVTPTSSSYNDAIQIFTHLY
RDWTDDGRELRRKTYMPILRAAARLFQPSSPSMARNDGMVDAIEIKYILV
PGAGLGRLAFELAFGQRPSQQLQPCFHVTAMDISPVMIAATAAVLDVVFA
SKTEEGEEGRGGKEGANFFYPFLHDPLLNQRSHARRFHAASFPDTAAVNQ
LQSHRMKGKQRHHATSFFSSSSSTSSSSSSSSSASLPSSSLALELGNFLH
LPLHSSSSWSQSQHAIITCYFLDTAPNPLSYLRTIHSLLKEGGYWINLGP
LNYHTTLPNGAVQLTVEEIEIAAEGMGFRKIKEGEDEDGEEEEGQLEWCA
YRPEPPRVGGKEGEGEGGREEGSAFLRVDVYKPVMSIFQRIKTR*
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mRNA from alignment at chr1:1286875..1289109-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04870.1 ID=NO01G04870.1|Name=NO01G04870.1|organism=Nannochloropsis oceanica|type=mRNA|length=2235bp|location=Sequence derived from alignment at chr1:1286875..1289109- (Nannochloropsis oceanica)
ACTACAGAGCAATAACCCATGTTGACTCATTCATGAGCGCTCCTACTACT
TCTATTCCCATCGTGATGCCCCACTTCACGAGCAGTGGCAGTAGCAGTGC
TGGCAGTCGTCGGACCTTGTTCCTGGTCATGCTGATGCTGGTTGTCCTCG
GTGTGCTGCTCTCCACCGCCCTCTTTGTCCTACGAACGAAGCAACAACAG
CAGCAGAGACAAGATCAGCGGCAGCAATGGGAGCATCGGCAATACTGCGA
GGACGTAAAGCCCCCCCTTTCAAGCGTGCCTGTCTTCTTCACAGCCGGGG
TCACGGCGGAGACGCAACGTGCAGCTTACTCTACTTTGAAAGGGACTTTG
GAACAATACCGGTCGGAATTAGGATTGAGAATAAATGCACTGCATAACAT
GACTTATGTGCGGCTGCCGGGATGGCAGGAAGAGGAAGATGATGGGGAGG
AGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAG
GAAAAGCATGCCGGCCTTCGGTCGAAGGCGAGAGCTAATTTGACAGCGAG
TTTGCAAGCACGAATGTGGAAAGAATTCGAGAAAATTCCTGCGTGCTGGC
AACAAAATGAGGACCTCTTAACCCTACTCCTACGTTTTCCTAAGCCGACC
TCTGCCTTGTTACCCGCGGCCCAAGGAACGCCAAAGCAACGACCTAAACA
ACGACAAAAAGAGCAATCGACATCTGTAACACCTACTAGCAGCTCATATA
ACGATGCCATCCAAATCTTTACTCACCTCTATCGAGATTGGACGGATGAC
GGCCGTGAGCTCCGCCGCAAGACCTACATGCCCATCCTCCGAGCCGCTGC
TCGTTTATTCCAACCATCCTCGCCAAGCATGGCACGGAATGATGGCATGG
TGGATGCGATAGAGATAAAGTATATTTTGGTTCCAGGCGCAGGCCTAGGT
CGTCTGGCGTTCGAGCTTGCTTTTGGTCAGCGGCCCTCGCAGCAGCTGCA
GCCGTGCTTCCATGTCACGGCTATGGATATCAGCCCTGTCATGATCGCAG
CGACGGCGGCTGTGTTAGATGTTGTATTTGCATCAAAGACGGAGGAGGGA
GAGGAGGGGAGAGGAGGGAAAGAGGGCGCAAATTTCTTTTATCCCTTTTT
GCATGATCCCCTTCTGAATCAGCGTTCGCATGCTCGTCGCTTCCACGCCG
CGTCTTTCCCCGATACGGCAGCTGTGAATCAACTTCAGTCGCATCGAATG
AAAGGAAAACAAAGACATCATGCCACGTCCTTCTTCTCCTCCTCCTCCTC
CACCTCCTCCTCCTCCTCCTCCTCCTCCTCGGCCTCCTTGCCCTCCTCTT
CCCTCGCCCTCGAACTCGGCAACTTCCTCCACCTCCCCCTCCACTCGTCC
TCCTCGTGGTCCCAATCCCAACACGCAATAATCACCTGCTATTTCCTCGA
TACAGCCCCGAACCCTCTCTCCTACCTACGCACTATTCACTCCCTCCTCA
AGGAGGGGGGGTATTGGATCAATCTCGGCCCTCTTAACTACCACACTACT
CTCCCCAACGGCGCCGTGCAACTGACGGTGGAGGAAATAGAAATAGCAGC
GGAAGGAATGGGTTTCCGGAAGATCAAGGAGGGCGAGGACGAGGACGGGG
AGGAGGAGGAGGGACAGCTGGAATGGTGTGCATATCGGCCAGAGCCTCCG
AGGGTGGGAGGGAAGGAGGGGGAGGGAGAGGGAGGGAGGGAGGAAGGATC
AGCATTTTTGCGTGTAGATGTGTACAAGCCGGTCATGAGTATATTTCAGA
GGATAAAAACGAGGTAGCGACTGCCTTACATGTGACAAGTAAATAGACAG
TGAGACAGAAGGGGAAAATATAGAAGAAATGAAAGGTTCAAGTCACAAAG
CCGAAAGTAAGAGCGACGATAATAAAATGTCTAACGAACTGTAAGGGATG
CCTCGAACGAGTAAGTCGGTCAATGTCTCCCCAGAAGGGACAAGAAATAT
ACACTTGATCCCCTCTTAGACGATTTTTTCATGTTTTCTTTTTCGTTCGT
TTTTGTTTTACTCCCTGATTTATCATTAGTAGTTTAACTACGTGTGTGTA
TGTGTGACATATCACCTGAAAATAAAGCTATCTTCTTGTCTTTATGCTGC
TTCACGAAAATATTTGTGTGAAACGCTGCAGTCGCTCACTGCATTAACAA
CACACATCCGACCTACCACAATCCCCCACCCTCCC
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Coding sequence (CDS) from alignment at chr1:1286875..1289109-

>NO01G04870.1 ID=NO01G04870.1|Name=NO01G04870.1|organism=Nannochloropsis oceanica|type=CDS|length=1785bp|location=Sequence derived from alignment at chr1:1286875..1289109- (Nannochloropsis oceanica)
ATGAGCGCTCCTACTACTTCTATTCCCATCGTGATGCCCCACTTCACGAG
CAGTGGCAGTAGCAGTGCTGGCAGTCGTCGGACCTTGTTCCTGGTCATGC
TGATGCTGGTTGTCCTCGGTGTGCTGCTCTCCACCGCCCTCTTTGTCCTA
CGAACGAAGCAACAACAGCAGCAGAGACAAGATCAGCGGCAGCAATGGGA
GCATCGGCAATACTGCGAGGACGTAAAGCCCCCCCTTTCAAGCGTGCCTG
TCTTCTTCACAGCCGGGGTCACGGCGGAGACGCAACGTGCAGCTTACTCT
ACTTTGAAAGGGACTTTGGAACAATACCGGTCGGAATTAGGATTGAGAAT
AAATGCACTGCATAACATGACTTATGTGCGGCTGCCGGGATGGCAGGAAG
AGGAAGATGATGGGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAA
GAGGAGGAGGAGGAGGAGGAAAAGCATGCCGGCCTTCGGTCGAAGGCGAG
AGCTAATTTGACAGCGAGTTTGCAAGCACGAATGTGGAAAGAATTCGAGA
AAATTCCTGCGTGCTGGCAACAAAATGAGGACCTCTTAACCCTACTCCTA
CGTTTTCCTAAGCCGACCTCTGCCTTGTTACCCGCGGCCCAAGGAACGCC
AAAGCAACGACCTAAACAACGACAAAAAGAGCAATCGACATCTGTAACAC
CTACTAGCAGCTCATATAACGATGCCATCCAAATCTTTACTCACCTCTAT
CGAGATTGGACGGATGACGGCCGTGAGCTCCGCCGCAAGACCTACATGCC
CATCCTCCGAGCCGCTGCTCGTTTATTCCAACCATCCTCGCCAAGCATGG
CACGGAATGATGGCATGGTGGATGCGATAGAGATAAAGTATATTTTGGTT
CCAGGCGCAGGCCTAGGTCGTCTGGCGTTCGAGCTTGCTTTTGGTCAGCG
GCCCTCGCAGCAGCTGCAGCCGTGCTTCCATGTCACGGCTATGGATATCA
GCCCTGTCATGATCGCAGCGACGGCGGCTGTGTTAGATGTTGTATTTGCA
TCAAAGACGGAGGAGGGAGAGGAGGGGAGAGGAGGGAAAGAGGGCGCAAA
TTTCTTTTATCCCTTTTTGCATGATCCCCTTCTGAATCAGCGTTCGCATG
CTCGTCGCTTCCACGCCGCGTCTTTCCCCGATACGGCAGCTGTGAATCAA
CTTCAGTCGCATCGAATGAAAGGAAAACAAAGACATCATGCCACGTCCTT
CTTCTCCTCCTCCTCCTCCACCTCCTCCTCCTCCTCCTCCTCCTCCTCGG
CCTCCTTGCCCTCCTCTTCCCTCGCCCTCGAACTCGGCAACTTCCTCCAC
CTCCCCCTCCACTCGTCCTCCTCGTGGTCCCAATCCCAACACGCAATAAT
CACCTGCTATTTCCTCGATACAGCCCCGAACCCTCTCTCCTACCTACGCA
CTATTCACTCCCTCCTCAAGGAGGGGGGGTATTGGATCAATCTCGGCCCT
CTTAACTACCACACTACTCTCCCCAACGGCGCCGTGCAACTGACGGTGGA
GGAAATAGAAATAGCAGCGGAAGGAATGGGTTTCCGGAAGATCAAGGAGG
GCGAGGACGAGGACGGGGAGGAGGAGGAGGGACAGCTGGAATGGTGTGCA
TATCGGCCAGAGCCTCCGAGGGTGGGAGGGAAGGAGGGGGAGGGAGAGGG
AGGGAGGGAGGAAGGATCAGCATTTTTGCGTGTAGATGTGTACAAGCCGG
TCATGAGTATATTTCAGAGGATAAAAACGAGGTAG
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Synonyms
Publications