NO01G04860.1, NO01G04860.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04860.1
Unique NameNO01G04860.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1515
Alignment locationchr1:1285162..1286861 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1285162..1286861 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G04860.1 vs.
Match: EWM29410.1 (peptidyl-prolyl cis-trans isomerase [Nannochloropsis gaditana])

HSP 1 Score: 701.4 bits (1809), Expect = 1.800e-198
Identity = 358/454 (78.85%), Postives = 398/454 (87.67%), Query Frame = 0
Query:    9 VLALALGPVALDAFLLPPAPLRSGAVGLMTMRAEKDTKTSSSGWHKIPKKLLAPATLAFATWQSTFSFHPALLGSTSSNLMPRLETVRSVQAAGRQNAPTSAGSRVNKDAESLLRYGLPINSKEARDLQEAIEGVKENVRSKRLSEGKKDVSRAKTILSSKKEKLLKAVRPDGKARATELLSEIDTKLDEIATTFNEDAGRGSEQERAKLDLAYKQQAAASRSITELQELMVPAGYTVKVPEEFAYLPQLQGRAEVDMTMKKAEAGEKFEIKGKLYDAINIKMVIDGFNAPVTAGNFVDLVQKGFYNNRPITRSDGFVVQFGDPEPEGEVHGYVPPGQKEVRKIPLEIFVTQDDAPMYGTTTEDDGRGYSATRLPFQAYGAIGMAREEYVADSASSQVFWLLFESDLTPAGKNLLDGRYACLGYTIENAELLAGVKEGDVIVSAKVVKGAENLV 463
            VL   L  +  DAFL+P +PLR+ A  L+TM A KD +T  S W  +P+K+LAPATLAFATWQSTFSF P +LG++SS + P  ETV+S  AA   NAP+SAGSRVNKDAESLLRYGLPINSKEAR+LQEA+EGVKEN+R KRL+EGKKDV RAK+IL+SK+EKLLKAVRPDGK RA ELL E++  LDE+  TF EDAGRGSEQERAKLDLAYKQQ  ASR++TE++ELMVPAGYTV VPEEF+ LPQLQGRAEVDM +KK EAGEKFEIKGKLYD+I +KMVIDGFNAPVTAGNFVDLVQKGFYNNRPITRSDGFVVQ+GDP+P+GEVHGYVP G K+VR IPLEIFV QD++PMYG TTEDDGRGYSATRLPFQAYGAIGMAREEYVADSASSQVFWLLFESDLTPAGKNLLDGRY C GYT ENA+LLAGVKEGDVIVSAKVVKG ENLV
Sbjct:   10 VLVSILSLIPADAFLVPASPLRAQASSLLTMEATKDPQTPGSPWINLPRKILAPATLAFATWQSTFSFQPGILGASSS-VFPGFETVQSAHAARPSNAPSSAGSRVNKDAESLLRYGLPINSKEARELQEAVEGVKENIRGKRLNEGKKDVQRAKSILASKREKLLKAVRPDGKERAQELLKELEGNLDELTATFAEDAGRGSEQERAKLDLAYKQQLDASRAVTEVEELMVPAGYTVSVPEEFSNLPQLQGRAEVDMVLKKGEAGEKFEIKGKLYDSIQVKMVIDGFNAPVTAGNFVDLVQKGFYNNRPITRSDGFVVQYGDPDPQGEVHGYVPFGSKDVRTIPLEIFVAQDESPMYGMTTEDDGRGYSATRLPFQAYGAIGMAREEYVADSASSQVFWLLFESDLTPAGKNLLDGRYTCFGYTTENADLLAGVKEGDVIVSAKVVKGGENLV 462          
The following BLAST results are available for this feature:
BLAST of NO01G04860.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29410.11.800e-19878.85peptidyl-prolyl cis-trans isomerase [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04860NO01G04860Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04860.1NO01G04860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04860.1.cds1NO01G04860.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04860.1.cds2NO01G04860.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04860.1 ID=NO01G04860.1|Name=NO01G04860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1515bp
ACAGGGCCTTCTTCGATTGTCAACCGTCTTCAAGCCCACGTGCTGCATCT
TCCACTTCGTCGAGCCCAATTCACCATGAAAGTTATCCTCTCCTCCGCCG
TCTTGGCCTTGGCCCTGGGCCCCGTCGCCTTAGACGCCTTTTTGCTTCCT
CCCGCGCCTTTGCGATCTGGGGCGGTTGGCTTGATGACCATGCGAGCGGA
AAAGGACACTAAGACGTCTAGTAGCGGTTGGCATAAAATCCCCAAGAAAC
TCCTCGCGCCCGCCACCCTCGCCTTTGCTACCTGGCAGTCCACTTTCTCG
TTTCATCCCGCCCTCTTGGGCTCTACCTCCTCCAACCTCATGCCTCGCCT
TGAAACCGTGCGATCCGTCCAAGCCGCTGGCCGTCAGAACGCCCCCACCT
CAGCCGGGAGCCGGGTAAACAAAGACGCGGAATCACTCCTCCGCTACGGA
CTACCCATCAATAGCAAAGAAGCTCGAGACCTTCAGGAAGCAATCGAAGG
GGTGAAAGAAAACGTCCGCTCCAAGCGCCTCAGTGAAGGCAAAAAAGACG
TCAGCCGGGCCAAGACGATTCTGTCCTCCAAAAAGGAAAAGCTTCTCAAA
GCCGTCCGGCCCGACGGCAAAGCCCGCGCCACTGAACTCCTCTCGGAAAT
CGACACAAAACTAGACGAAATTGCGACAACTTTCAATGAAGACGCCGGGC
GGGGCTCGGAGCAGGAACGTGCAAAGCTCGACCTGGCCTACAAGCAGCAA
GCCGCGGCCTCCCGCTCCATCACGGAACTGCAAGAGCTCATGGTGCCGGC
CGGATACACCGTTAAGGTTCCGGAGGAATTTGCGTACTTGCCTCAGCTGC
AGGGCCGGGCAGAGGTGGATATGACGATGAAGAAGGCCGAGGCCGGGGAG
AAGTTTGAGATAAAAGGGAAGCTGTATGACGCCATCAATATCAAGATGGT
GATTGACGGGTTCAACGCCCCTGTCACGGCCGGGAATTTCGTGGACCTGG
TGCAGAAAGGCTTTTATAACAACAGACCGATCACGCGGAGCGATGGTTTT
GTCGTCCAATTCGGTGACCCAGAGCCTGAGGGGGAGGTGCATGGCTATGT
GCCGCCAGGGCAGAAGGAAGTGCGGAAGATCCCGCTGGAGATATTTGTGA
CGCAGGATGACGCACCAATGTATGGGACGACGACTGAGGATGATGGTAGG
GGCTATAGTGCAACGAGATTGCCATTCCAGGCATACGGAGCGATAGGGAT
GGCGAGGGAGGAGTATGTGGCGGACTCGGCCAGCAGCCAGGTGTTTTGGT
TGTTGTTTGAGAGTGACTTAACGCCTGCAGGGAAGAATCTGTTGGATGGG
CGGTATGCATGCCTCGGGTACACGATTGAGAATGCCGAGTTGCTGGCGGG
CGTGAAGGAGGGTGATGTCATCGTGAGCGCTAAAGTGGTGAAGGGGGCGG
AGAACTTGGTGCCGGGGAAGAAGCAGTAGAGGGAGGGAGGAGGGAGGGAG
GGAGGGAGAGAGGGA
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protein sequence of NO01G04860.1

>NO01G04860.1-protein ID=NO01G04860.1-protein|Name=NO01G04860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=468bp
MKVILSSAVLALALGPVALDAFLLPPAPLRSGAVGLMTMRAEKDTKTSSS
GWHKIPKKLLAPATLAFATWQSTFSFHPALLGSTSSNLMPRLETVRSVQA
AGRQNAPTSAGSRVNKDAESLLRYGLPINSKEARDLQEAIEGVKENVRSK
RLSEGKKDVSRAKTILSSKKEKLLKAVRPDGKARATELLSEIDTKLDEIA
TTFNEDAGRGSEQERAKLDLAYKQQAAASRSITELQELMVPAGYTVKVPE
EFAYLPQLQGRAEVDMTMKKAEAGEKFEIKGKLYDAINIKMVIDGFNAPV
TAGNFVDLVQKGFYNNRPITRSDGFVVQFGDPEPEGEVHGYVPPGQKEVR
KIPLEIFVTQDDAPMYGTTTEDDGRGYSATRLPFQAYGAIGMAREEYVAD
SASSQVFWLLFESDLTPAGKNLLDGRYACLGYTIENAELLAGVKEGDVIV
SAKVVKGAENLVPGKKQ*
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mRNA from alignment at chr1:1285162..1286861+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04860.1 ID=NO01G04860.1|Name=NO01G04860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1700bp|location=Sequence derived from alignment at chr1:1285162..1286861+ (Nannochloropsis oceanica)
ACAGGGCCTTCTTCGATTGTCAACCGTCTTCAAGCCCACGTGCTGCATCT TCCACTTCGTCGAGCCCAATTCACCATGAAAGTTATCCTCTCCTCCGCCG TCTTGGCCTTGGCCCTGGGCCCCGTCGCCTTAGACGCCTTTTTGCTTCCT CCCGCGCCTTTGCGATCTGGGGCGGTTGGCTTGATGACCATGCGAGCGGA AAAGGTACGATGCCCGCCCTTTTTGATTCTTGTGAGGGTGCAGCTCTCGA GGAGATAATGCCGTCGTCTGAAAGGCTCCAGCAACGCGTCCACCCATCCA TTCCGATCCTTTGGGTGGCTATTATCTAACAATTTTTCTGCCTCGTGAAA CGACCCGTCCTTCTCTTTCTCCCTCCCTCCCTCCCACAGGACACTAAGAC GTCTAGTAGCGGTTGGCATAAAATCCCCAAGAAACTCCTCGCGCCCGCCA CCCTCGCCTTTGCTACCTGGCAGTCCACTTTCTCGTTTCATCCCGCCCTC TTGGGCTCTACCTCCTCCAACCTCATGCCTCGCCTTGAAACCGTGCGATC CGTCCAAGCCGCTGGCCGTCAGAACGCCCCCACCTCAGCCGGGAGCCGGG TAAACAAAGACGCGGAATCACTCCTCCGCTACGGACTACCCATCAATAGC AAAGAAGCTCGAGACCTTCAGGAAGCAATCGAAGGGGTGAAAGAAAACGT CCGCTCCAAGCGCCTCAGTGAAGGCAAAAAAGACGTCAGCCGGGCCAAGA CGATTCTGTCCTCCAAAAAGGAAAAGCTTCTCAAAGCCGTCCGGCCCGAC GGCAAAGCCCGCGCCACTGAACTCCTCTCGGAAATCGACACAAAACTAGA CGAAATTGCGACAACTTTCAATGAAGACGCCGGGCGGGGCTCGGAGCAGG AACGTGCAAAGCTCGACCTGGCCTACAAGCAGCAAGCCGCGGCCTCCCGC TCCATCACGGAACTGCAAGAGCTCATGGTGCCGGCCGGATACACCGTTAA GGTTCCGGAGGAATTTGCGTACTTGCCTCAGCTGCAGGGCCGGGCAGAGG TGGATATGACGATGAAGAAGGCCGAGGCCGGGGAGAAGTTTGAGATAAAA GGGAAGCTGTATGACGCCATCAATATCAAGATGGTGATTGACGGGTTCAA CGCCCCTGTCACGGCCGGGAATTTCGTGGACCTGGTGCAGAAAGGCTTTT ATAACAACAGACCGATCACGCGGAGCGATGGTTTTGTCGTCCAATTCGGT GACCCAGAGCCTGAGGGGGAGGTGCATGGCTATGTGCCGCCAGGGCAGAA GGAAGTGCGGAAGATCCCGCTGGAGATATTTGTGACGCAGGATGACGCAC CAATGTATGGGACGACGACTGAGGATGATGGTAGGGGCTATAGTGCAACG AGATTGCCATTCCAGGCATACGGAGCGATAGGGATGGCGAGGGAGGAGTA TGTGGCGGACTCGGCCAGCAGCCAGGTGTTTTGGTTGTTGTTTGAGAGTG ACTTAACGCCTGCAGGGAAGAATCTGTTGGATGGGCGGTATGCATGCCTC GGGTACACGATTGAGAATGCCGAGTTGCTGGCGGGCGTGAAGGAGGGTGA TGTCATCGTGAGCGCTAAAGTGGTGAAGGGGGCGGAGAACTTGGTGCCGG GGAAGAAGCAGTAGAGGGAGGGAGGAGGGAGGGAGGGAGGGAGAGAGGGA
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Coding sequence (CDS) from alignment at chr1:1285162..1286861+

>NO01G04860.1 ID=NO01G04860.1|Name=NO01G04860.1|organism=Nannochloropsis oceanica|type=CDS|length=1404bp|location=Sequence derived from alignment at chr1:1285162..1286861+ (Nannochloropsis oceanica)
ATGAAAGTTATCCTCTCCTCCGCCGTCTTGGCCTTGGCCCTGGGCCCCGT
CGCCTTAGACGCCTTTTTGCTTCCTCCCGCGCCTTTGCGATCTGGGGCGG
TTGGCTTGATGACCATGCGAGCGGAAAAGGACACTAAGACGTCTAGTAGC
GGTTGGCATAAAATCCCCAAGAAACTCCTCGCGCCCGCCACCCTCGCCTT
TGCTACCTGGCAGTCCACTTTCTCGTTTCATCCCGCCCTCTTGGGCTCTA
CCTCCTCCAACCTCATGCCTCGCCTTGAAACCGTGCGATCCGTCCAAGCC
GCTGGCCGTCAGAACGCCCCCACCTCAGCCGGGAGCCGGGTAAACAAAGA
CGCGGAATCACTCCTCCGCTACGGACTACCCATCAATAGCAAAGAAGCTC
GAGACCTTCAGGAAGCAATCGAAGGGGTGAAAGAAAACGTCCGCTCCAAG
CGCCTCAGTGAAGGCAAAAAAGACGTCAGCCGGGCCAAGACGATTCTGTC
CTCCAAAAAGGAAAAGCTTCTCAAAGCCGTCCGGCCCGACGGCAAAGCCC
GCGCCACTGAACTCCTCTCGGAAATCGACACAAAACTAGACGAAATTGCG
ACAACTTTCAATGAAGACGCCGGGCGGGGCTCGGAGCAGGAACGTGCAAA
GCTCGACCTGGCCTACAAGCAGCAAGCCGCGGCCTCCCGCTCCATCACGG
AACTGCAAGAGCTCATGGTGCCGGCCGGATACACCGTTAAGGTTCCGGAG
GAATTTGCGTACTTGCCTCAGCTGCAGGGCCGGGCAGAGGTGGATATGAC
GATGAAGAAGGCCGAGGCCGGGGAGAAGTTTGAGATAAAAGGGAAGCTGT
ATGACGCCATCAATATCAAGATGGTGATTGACGGGTTCAACGCCCCTGTC
ACGGCCGGGAATTTCGTGGACCTGGTGCAGAAAGGCTTTTATAACAACAG
ACCGATCACGCGGAGCGATGGTTTTGTCGTCCAATTCGGTGACCCAGAGC
CTGAGGGGGAGGTGCATGGCTATGTGCCGCCAGGGCAGAAGGAAGTGCGG
AAGATCCCGCTGGAGATATTTGTGACGCAGGATGACGCACCAATGTATGG
GACGACGACTGAGGATGATGGTAGGGGCTATAGTGCAACGAGATTGCCAT
TCCAGGCATACGGAGCGATAGGGATGGCGAGGGAGGAGTATGTGGCGGAC
TCGGCCAGCAGCCAGGTGTTTTGGTTGTTGTTTGAGAGTGACTTAACGCC
TGCAGGGAAGAATCTGTTGGATGGGCGGTATGCATGCCTCGGGTACACGA
TTGAGAATGCCGAGTTGCTGGCGGGCGTGAAGGAGGGTGATGTCATCGTG
AGCGCTAAAGTGGTGAAGGGGGCGGAGAACTTGGTGCCGGGGAAGAAGCA
GTAG
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Synonyms
Publications