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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:1285162..1286861 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G04860.1 vs.
Match: EWM29410.1 (peptidyl-prolyl cis-trans isomerase [Nannochloropsis gaditana]) HSP 1 Score: 701.4 bits (1809), Expect = 1.800e-198 Identity = 358/454 (78.85%), Postives = 398/454 (87.67%), Query Frame = 0
Query: 9 VLALALGPVALDAFLLPPAPLRSGAVGLMTMRAEKDTKTSSSGWHKIPKKLLAPATLAFATWQSTFSFHPALLGSTSSNLMPRLETVRSVQAAGRQNAPTSAGSRVNKDAESLLRYGLPINSKEARDLQEAIEGVKENVRSKRLSEGKKDVSRAKTILSSKKEKLLKAVRPDGKARATELLSEIDTKLDEIATTFNEDAGRGSEQERAKLDLAYKQQAAASRSITELQELMVPAGYTVKVPEEFAYLPQLQGRAEVDMTMKKAEAGEKFEIKGKLYDAINIKMVIDGFNAPVTAGNFVDLVQKGFYNNRPITRSDGFVVQFGDPEPEGEVHGYVPPGQKEVRKIPLEIFVTQDDAPMYGTTTEDDGRGYSATRLPFQAYGAIGMAREEYVADSASSQVFWLLFESDLTPAGKNLLDGRYACLGYTIENAELLAGVKEGDVIVSAKVVKGAENLV 463
VL L + DAFL+P +PLR+ A L+TM A KD +T S W +P+K+LAPATLAFATWQSTFSF P +LG++SS + P ETV+S AA NAP+SAGSRVNKDAESLLRYGLPINSKEAR+LQEA+EGVKEN+R KRL+EGKKDV RAK+IL+SK+EKLLKAVRPDGK RA ELL E++ LDE+ TF EDAGRGSEQERAKLDLAYKQQ ASR++TE++ELMVPAGYTV VPEEF+ LPQLQGRAEVDM +KK EAGEKFEIKGKLYD+I +KMVIDGFNAPVTAGNFVDLVQKGFYNNRPITRSDGFVVQ+GDP+P+GEVHGYVP G K+VR IPLEIFV QD++PMYG TTEDDGRGYSATRLPFQAYGAIGMAREEYVADSASSQVFWLLFESDLTPAGKNLLDGRY C GYT ENA+LLAGVKEGDVIVSAKVVKG ENLV
Sbjct: 10 VLVSILSLIPADAFLVPASPLRAQASSLLTMEATKDPQTPGSPWINLPRKILAPATLAFATWQSTFSFQPGILGASSS-VFPGFETVQSAHAARPSNAPSSAGSRVNKDAESLLRYGLPINSKEARELQEAVEGVKENIRGKRLNEGKKDVQRAKSILASKREKLLKAVRPDGKERAQELLKELEGNLDELTATFAEDAGRGSEQERAKLDLAYKQQLDASRAVTEVEELMVPAGYTVSVPEEFSNLPQLQGRAEVDMVLKKGEAGEKFEIKGKLYDSIQVKMVIDGFNAPVTAGNFVDLVQKGFYNNRPITRSDGFVVQYGDPDPQGEVHGYVPFGSKDVRTIPLEIFVAQDESPMYGMTTEDDGRGYSATRLPFQAYGAIGMAREEYVADSASSQVFWLLFESDLTPAGKNLLDGRYTCFGYTTENADLLAGVKEGDVIVSAKVVKGGENLV 462
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G04860.1 ID=NO01G04860.1|Name=NO01G04860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1515bp ACAGGGCCTTCTTCGATTGTCAACCGTCTTCAAGCCCACGTGCTGCATCT TCCACTTCGTCGAGCCCAATTCACCATGAAAGTTATCCTCTCCTCCGCCG TCTTGGCCTTGGCCCTGGGCCCCGTCGCCTTAGACGCCTTTTTGCTTCCT CCCGCGCCTTTGCGATCTGGGGCGGTTGGCTTGATGACCATGCGAGCGGA AAAGGACACTAAGACGTCTAGTAGCGGTTGGCATAAAATCCCCAAGAAAC TCCTCGCGCCCGCCACCCTCGCCTTTGCTACCTGGCAGTCCACTTTCTCG TTTCATCCCGCCCTCTTGGGCTCTACCTCCTCCAACCTCATGCCTCGCCT TGAAACCGTGCGATCCGTCCAAGCCGCTGGCCGTCAGAACGCCCCCACCT CAGCCGGGAGCCGGGTAAACAAAGACGCGGAATCACTCCTCCGCTACGGA CTACCCATCAATAGCAAAGAAGCTCGAGACCTTCAGGAAGCAATCGAAGG GGTGAAAGAAAACGTCCGCTCCAAGCGCCTCAGTGAAGGCAAAAAAGACG TCAGCCGGGCCAAGACGATTCTGTCCTCCAAAAAGGAAAAGCTTCTCAAA GCCGTCCGGCCCGACGGCAAAGCCCGCGCCACTGAACTCCTCTCGGAAAT CGACACAAAACTAGACGAAATTGCGACAACTTTCAATGAAGACGCCGGGC GGGGCTCGGAGCAGGAACGTGCAAAGCTCGACCTGGCCTACAAGCAGCAA GCCGCGGCCTCCCGCTCCATCACGGAACTGCAAGAGCTCATGGTGCCGGC CGGATACACCGTTAAGGTTCCGGAGGAATTTGCGTACTTGCCTCAGCTGC AGGGCCGGGCAGAGGTGGATATGACGATGAAGAAGGCCGAGGCCGGGGAG AAGTTTGAGATAAAAGGGAAGCTGTATGACGCCATCAATATCAAGATGGT GATTGACGGGTTCAACGCCCCTGTCACGGCCGGGAATTTCGTGGACCTGG TGCAGAAAGGCTTTTATAACAACAGACCGATCACGCGGAGCGATGGTTTT GTCGTCCAATTCGGTGACCCAGAGCCTGAGGGGGAGGTGCATGGCTATGT GCCGCCAGGGCAGAAGGAAGTGCGGAAGATCCCGCTGGAGATATTTGTGA CGCAGGATGACGCACCAATGTATGGGACGACGACTGAGGATGATGGTAGG GGCTATAGTGCAACGAGATTGCCATTCCAGGCATACGGAGCGATAGGGAT GGCGAGGGAGGAGTATGTGGCGGACTCGGCCAGCAGCCAGGTGTTTTGGT TGTTGTTTGAGAGTGACTTAACGCCTGCAGGGAAGAATCTGTTGGATGGG CGGTATGCATGCCTCGGGTACACGATTGAGAATGCCGAGTTGCTGGCGGG CGTGAAGGAGGGTGATGTCATCGTGAGCGCTAAAGTGGTGAAGGGGGCGG AGAACTTGGTGCCGGGGAAGAAGCAGTAGAGGGAGGGAGGAGGGAGGGAG GGAGGGAGAGAGGGA back to topprotein sequence of NO01G04860.1 >NO01G04860.1-protein ID=NO01G04860.1-protein|Name=NO01G04860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=468bp MKVILSSAVLALALGPVALDAFLLPPAPLRSGAVGLMTMRAEKDTKTSSS GWHKIPKKLLAPATLAFATWQSTFSFHPALLGSTSSNLMPRLETVRSVQA AGRQNAPTSAGSRVNKDAESLLRYGLPINSKEARDLQEAIEGVKENVRSK RLSEGKKDVSRAKTILSSKKEKLLKAVRPDGKARATELLSEIDTKLDEIA TTFNEDAGRGSEQERAKLDLAYKQQAAASRSITELQELMVPAGYTVKVPE EFAYLPQLQGRAEVDMTMKKAEAGEKFEIKGKLYDAINIKMVIDGFNAPV TAGNFVDLVQKGFYNNRPITRSDGFVVQFGDPEPEGEVHGYVPPGQKEVR KIPLEIFVTQDDAPMYGTTTEDDGRGYSATRLPFQAYGAIGMAREEYVAD SASSQVFWLLFESDLTPAGKNLLDGRYACLGYTIENAELLAGVKEGDVIV SAKVVKGAENLVPGKKQ* back to topmRNA from alignment at chr1:1285162..1286861+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G04860.1 ID=NO01G04860.1|Name=NO01G04860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1700bp|location=Sequence derived from alignment at chr1:1285162..1286861+ (Nannochloropsis oceanica) ACAGGGCCTTCTTCGATTGTCAACCGTCTTCAAGCCCACGTGCTGCATCT
TCCACTTCGTCGAGCCCAATTCACCATGAAAGTTATCCTCTCCTCCGCCG
TCTTGGCCTTGGCCCTGGGCCCCGTCGCCTTAGACGCCTTTTTGCTTCCT
CCCGCGCCTTTGCGATCTGGGGCGGTTGGCTTGATGACCATGCGAGCGGA
AAAGGTACGATGCCCGCCCTTTTTGATTCTTGTGAGGGTGCAGCTCTCGA
GGAGATAATGCCGTCGTCTGAAAGGCTCCAGCAACGCGTCCACCCATCCA
TTCCGATCCTTTGGGTGGCTATTATCTAACAATTTTTCTGCCTCGTGAAA
CGACCCGTCCTTCTCTTTCTCCCTCCCTCCCTCCCACAGGACACTAAGAC
GTCTAGTAGCGGTTGGCATAAAATCCCCAAGAAACTCCTCGCGCCCGCCA
CCCTCGCCTTTGCTACCTGGCAGTCCACTTTCTCGTTTCATCCCGCCCTC
TTGGGCTCTACCTCCTCCAACCTCATGCCTCGCCTTGAAACCGTGCGATC
CGTCCAAGCCGCTGGCCGTCAGAACGCCCCCACCTCAGCCGGGAGCCGGG
TAAACAAAGACGCGGAATCACTCCTCCGCTACGGACTACCCATCAATAGC
AAAGAAGCTCGAGACCTTCAGGAAGCAATCGAAGGGGTGAAAGAAAACGT
CCGCTCCAAGCGCCTCAGTGAAGGCAAAAAAGACGTCAGCCGGGCCAAGA
CGATTCTGTCCTCCAAAAAGGAAAAGCTTCTCAAAGCCGTCCGGCCCGAC
GGCAAAGCCCGCGCCACTGAACTCCTCTCGGAAATCGACACAAAACTAGA
CGAAATTGCGACAACTTTCAATGAAGACGCCGGGCGGGGCTCGGAGCAGG
AACGTGCAAAGCTCGACCTGGCCTACAAGCAGCAAGCCGCGGCCTCCCGC
TCCATCACGGAACTGCAAGAGCTCATGGTGCCGGCCGGATACACCGTTAA
GGTTCCGGAGGAATTTGCGTACTTGCCTCAGCTGCAGGGCCGGGCAGAGG
TGGATATGACGATGAAGAAGGCCGAGGCCGGGGAGAAGTTTGAGATAAAA
GGGAAGCTGTATGACGCCATCAATATCAAGATGGTGATTGACGGGTTCAA
CGCCCCTGTCACGGCCGGGAATTTCGTGGACCTGGTGCAGAAAGGCTTTT
ATAACAACAGACCGATCACGCGGAGCGATGGTTTTGTCGTCCAATTCGGT
GACCCAGAGCCTGAGGGGGAGGTGCATGGCTATGTGCCGCCAGGGCAGAA
GGAAGTGCGGAAGATCCCGCTGGAGATATTTGTGACGCAGGATGACGCAC
CAATGTATGGGACGACGACTGAGGATGATGGTAGGGGCTATAGTGCAACG
AGATTGCCATTCCAGGCATACGGAGCGATAGGGATGGCGAGGGAGGAGTA
TGTGGCGGACTCGGCCAGCAGCCAGGTGTTTTGGTTGTTGTTTGAGAGTG
ACTTAACGCCTGCAGGGAAGAATCTGTTGGATGGGCGGTATGCATGCCTC
GGGTACACGATTGAGAATGCCGAGTTGCTGGCGGGCGTGAAGGAGGGTGA
TGTCATCGTGAGCGCTAAAGTGGTGAAGGGGGCGGAGAACTTGGTGCCGG
GGAAGAAGCAGTAGAGGGAGGGAGGAGGGAGGGAGGGAGGGAGAGAGGGA
back to topCoding sequence (CDS) from alignment at chr1:1285162..1286861+ >NO01G04860.1 ID=NO01G04860.1|Name=NO01G04860.1|organism=Nannochloropsis oceanica|type=CDS|length=1404bp|location=Sequence derived from alignment at chr1:1285162..1286861+ (Nannochloropsis oceanica) ATGAAAGTTATCCTCTCCTCCGCCGTCTTGGCCTTGGCCCTGGGCCCCGT CGCCTTAGACGCCTTTTTGCTTCCTCCCGCGCCTTTGCGATCTGGGGCGG TTGGCTTGATGACCATGCGAGCGGAAAAGGACACTAAGACGTCTAGTAGC GGTTGGCATAAAATCCCCAAGAAACTCCTCGCGCCCGCCACCCTCGCCTT TGCTACCTGGCAGTCCACTTTCTCGTTTCATCCCGCCCTCTTGGGCTCTA CCTCCTCCAACCTCATGCCTCGCCTTGAAACCGTGCGATCCGTCCAAGCC GCTGGCCGTCAGAACGCCCCCACCTCAGCCGGGAGCCGGGTAAACAAAGA CGCGGAATCACTCCTCCGCTACGGACTACCCATCAATAGCAAAGAAGCTC GAGACCTTCAGGAAGCAATCGAAGGGGTGAAAGAAAACGTCCGCTCCAAG CGCCTCAGTGAAGGCAAAAAAGACGTCAGCCGGGCCAAGACGATTCTGTC CTCCAAAAAGGAAAAGCTTCTCAAAGCCGTCCGGCCCGACGGCAAAGCCC GCGCCACTGAACTCCTCTCGGAAATCGACACAAAACTAGACGAAATTGCG ACAACTTTCAATGAAGACGCCGGGCGGGGCTCGGAGCAGGAACGTGCAAA GCTCGACCTGGCCTACAAGCAGCAAGCCGCGGCCTCCCGCTCCATCACGG AACTGCAAGAGCTCATGGTGCCGGCCGGATACACCGTTAAGGTTCCGGAG GAATTTGCGTACTTGCCTCAGCTGCAGGGCCGGGCAGAGGTGGATATGAC GATGAAGAAGGCCGAGGCCGGGGAGAAGTTTGAGATAAAAGGGAAGCTGT ATGACGCCATCAATATCAAGATGGTGATTGACGGGTTCAACGCCCCTGTC ACGGCCGGGAATTTCGTGGACCTGGTGCAGAAAGGCTTTTATAACAACAG ACCGATCACGCGGAGCGATGGTTTTGTCGTCCAATTCGGTGACCCAGAGC CTGAGGGGGAGGTGCATGGCTATGTGCCGCCAGGGCAGAAGGAAGTGCGG AAGATCCCGCTGGAGATATTTGTGACGCAGGATGACGCACCAATGTATGG GACGACGACTGAGGATGATGGTAGGGGCTATAGTGCAACGAGATTGCCAT TCCAGGCATACGGAGCGATAGGGATGGCGAGGGAGGAGTATGTGGCGGAC TCGGCCAGCAGCCAGGTGTTTTGGTTGTTGTTTGAGAGTGACTTAACGCC TGCAGGGAAGAATCTGTTGGATGGGCGGTATGCATGCCTCGGGTACACGA TTGAGAATGCCGAGTTGCTGGCGGGCGTGAAGGAGGGTGATGTCATCGTG AGCGCTAAAGTGGTGAAGGGGGCGGAGAACTTGGTGCCGGGGAAGAAGCA GTAG back to top
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