NO01G04850.1, NO01G04850.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G04850.1
Unique Name	NO01G04850.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2169
Alignment location	chr1:1282839..1285007 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:1282839..1285007 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO01G04850.1 vs.
Match: EWM29418.1 (hypothetical protein Naga_100042g35 [Nannochloropsis gaditana])

HSP 1 Score: 863.6 bits (2230), Expect = 3.800e-247
Identity = 453/631 (71.79%), Postives = 510/631 (80.82%), Query Frame = 0

Query:   11 RGATPRSMRLLVSLCRLVLLVVSAEAFRGLIRPSPSSSSSS----APRVLATA-TAAPSSSFSPRLLAEHLSWPPASRNSRTRMPSMVMPSVAKVLTAVPRFLGRKLMDGGDAIYLKKCLFLPPGSSNVAAAITSSTSAIGGTSTRDDSKENASQGQTSPFPPPP-NTDMVLIFYPGIGLGPSSYRDTALAIQDALASNYDIQAYVVIAKFMNNLGYLPQEPQRRLASILAELGERGISPRAPVAVVGHSAGAFLAYDAALTRAQAFVHLGSTLNSRGVLPWTPRSVVEYPKPILQLLGEMDGYIRFTGGALEYAEVEGLMAKKGFEDVLLEKPVVVLPGVSHEQFGDGQQSKMARMSGRRDLPPYVSLQEAHRMTGKIVGAFLALHLFPENGQARVGGANTVRSAFEATGRMVRPYLNEMTEQAEDDFIRWAQAEVASVEGVGRNSVRACVFHTEQEFVYSKPTLDGESEYLQVCVRKQQQTNTIKIGFTKQISPAFGLKMKRQEAVVQVLRRYPSKKAPTAAELNRRTFQKALERVSEEARRRYDRYGRKLEFMADDEITAERGGGPAWVAAPLEVKPRVEDPMRVTVRAPVLYTPIDTLPRFAGMCYMKLLTPAQAIEWICHDAFIPW 636
            RG    ++  L+ L        SA A    I+P+ SS  SS    AP  +++A    P+SS     LA  L  P +    RTR  +M +PS+ ++LTAVPRF+GRK+MDGGDAIY+KK LFLPPGS +             GTS        + Q  TS  PP     DMVL+ +PGIG+GP++YR+TALAIQDALA+NYD++AYVV+AKF NNLGYLPQEP+RRLASIL E+  RG+S RAPVAV GHSAGAFLAY+AALTR+QAFVHLGSTLNSRGVLPW PRSV+ +PKPILQLLGEMDGYIRFTGGALEYAEVE LMAKKGFED LL+KPVV+LPGVSH+QFGDG QSK ARMSGRRDLPPYV+LQEAHRMTGKIV +FLA HLFP NG+ARV GA+ +R AFEATGRMVRPYL+E T QAEDDFIRWAQAEVASVEGVGRNSVRA ++ +E EFVYSKP LD ESEYLQVCVRK Q+   I+IGFTKQISPA   KMKRQEAVVQ LRRYPSKKAPTAAELN RTFQKALE+VSEEARRRYDRYGRKLEF+ADDEITAERGGGPAWVA PLEVK RVEDPMRVTVR+PVLYTPIDTLPRFAGMCYMKLLTPAQA+EWICHDA++PW
Sbjct:    5 RGRATPALMCLLFLLLFAQPAASAMASEAFIQPAASSCGSSFQASAPGKISSAFLCGPTSSQIASPLANFLERPVSQEAGRTRQQTMALPSIGRILTAVPRFVGRKIMDGGDAIYVKKSLFLPPGSRS------------SGTS--------SPQEDTSSQPPTSVEADMVLVLFPGIGMGPAAYRETALAIQDALAANYDVKAYVVVAKFFNNLGYLPQEPERRLASILTEVSLRGVSARAPVAVAGHSAGAFLAYEAALTRSQAFVHLGSTLNSRGVLPWKPRSVLAFPKPILQLLGEMDGYIRFTGGALEYAEVESLMAKKGFEDALLDKPVVLLPGVSHQQFGDGSQSKAARMSGRRDLPPYVALQEAHRMTGKIVASFLAYHLFPLNGRARVAGASVLRQAFEATGRMVRPYLDESTPQAEDDFIRWAQAEVASVEGVGRNSVRALLYESEGEFVYSKPFLDTESEYLQVCVRKVQEA-AIRIGFTKQISPALDFKMKRQEAVVQALRRYPSKKAPTAAELNHRTFQKALEKVSEEARRRYDRYGRKLEFIADDEITAERGGGPAWVATPLEVKARVEDPMRVTVRSPVLYTPIDTLPRFAGMCYMKLLTPAQAVEWICHDAYVPW 614

The following BLAST results are available for this feature:

BLAST of NO01G04850.1 vs.

BLAST of NO01G04850.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29418.1	3.800e-247	71.79	hypothetical protein Naga_100042g35 [Nannochlorops...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO01G04850	NO01G04850	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO01G04850.1	NO01G04850.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO01G04850.1.cds1	NO01G04850.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:1282839..1285007-
coding sequence from alignment at chr1:1282839..1285007-

mRNA sequence

>NO01G04850.1 ID=NO01G04850.1|Name=NO01G04850.1|organism=Nannochloropsis oceanica|type=mRNA|length=2169bp
TTCGGACACTTGTTGGCGCAATCGCATTTCTGAGCGAGGGTAGGCTGAAA
TGATGACCGCAGTGCCCTCAAGCACGCCACAAAACTAAACTGGGGGCAAT
AGGGCACAGCTAAATGTGCCTTTCCCTCTACCTCATAGAGCCATCTGCGT
GGCTCACTCACGAACCCCAATCATTTGCGTTTCCCCTCACATTGCACAGA
GCAACGTGGATTTCATGTTTTCACGCTGCCGCCGGGCGGGAGGCCGAGGG
GCCACTCCAAGAAGCATGCGGTTGCTCGTCAGTTTGTGCCGGCTTGTACT
GTTAGTGGTCAGTGCCGAGGCGTTCAGGGGGCTGATACGGCCATCGCCGT
CCTCGTCATCCTCCTCCGCTCCCCGTGTTCTAGCCACGGCCACCGCGGCC
CCTTCCTCCTCCTTCTCCCCTCGCCTACTCGCCGAGCACCTCTCATGGCC
ACCCGCGTCAAGAAACAGTCGGACGCGCATGCCAAGCATGGTCATGCCTA
GCGTTGCAAAGGTTCTGACCGCTGTGCCTCGTTTCCTGGGCCGGAAATTG
ATGGATGGAGGCGACGCTATATACCTCAAGAAATGCCTCTTCCTCCCTCC
AGGGAGCAGTAACGTTGCGGCTGCAATTACCAGCAGTACCAGCGCAATTG
GCGGCACCAGCACAAGAGATGACAGCAAGGAAAACGCTTCACAAGGACAA
ACATCGCCCTTCCCCCCTCCCCCCAACACTGACATGGTCCTAATTTTCTA
CCCTGGCATCGGACTCGGTCCCTCCTCCTATCGCGACACCGCCCTGGCCA
TTCAAGACGCCCTTGCGTCAAATTACGACATTCAAGCCTATGTGGTCATC
GCAAAGTTTATGAACAACCTGGGCTATCTTCCCCAAGAGCCCCAGCGCCG
CCTCGCGTCCATTCTAGCCGAGCTGGGCGAAAGAGGCATCTCTCCTCGGG
CCCCTGTTGCGGTTGTCGGTCATTCAGCCGGGGCGTTTCTGGCTTATGAC
GCCGCGTTAACCCGTGCACAGGCCTTTGTTCATTTAGGTTCAACGCTAAA
TAGCCGAGGAGTACTGCCGTGGACGCCACGAAGCGTGGTGGAGTACCCCA
AGCCGATTTTGCAGTTGCTGGGGGAGATGGATGGATATATCAGGTTCACT
GGTGGGGCGCTTGAGTATGCGGAGGTGGAGGGGTTGATGGCGAAGAAAGG
ATTCGAGGACGTGTTGCTTGAGAAGCCGGTTGTGGTGTTGCCCGGGGTGA
GTCATGAGCAGTTTGGGGACGGGCAGCAGAGTAAAATGGCTCGTATGAGT
GGGAGGAGGGATTTACCGCCTTATGTGTCATTGCAAGAGGCGCATCGAAT
GACGGGGAAGATCGTGGGGGCGTTTCTGGCGTTGCATTTATTTCCTGAAA
ACGGGCAGGCGAGAGTAGGCGGAGCGAATACCGTGCGGTCGGCGTTTGAG
GCGACAGGACGGATGGTACGGCCATACTTGAATGAAATGACCGAGCAGGC
GGAGGATGATTTTATCAGGTGGGCTCAAGCGGAGGTGGCGTCCGTGGAGG
GAGTGGGAAGGAATAGCGTGCGTGCCTGCGTGTTCCACACGGAGCAGGAG
TTCGTGTATTCGAAGCCGACCTTGGACGGGGAGAGTGAGTATTTACAGGT
GTGCGTGCGGAAGCAGCAGCAGACGAACACGATCAAGATCGGGTTCACGA
AACAAATTTCCCCGGCGTTTGGACTGAAAATGAAGAGACAAGAAGCGGTG
GTGCAGGTGTTGAGGCGGTACCCATCGAAAAAGGCCCCCACGGCCGCCGA
ATTGAATCGGAGGACGTTTCAAAAGGCGCTGGAGAGGGTGAGTGAGGAGG
CGAGGAGGAGGTACGATAGGTACGGGAGGAAGCTGGAGTTTATGGCAGAC
GATGAGATCACGGCAGAGAGGGGTGGGGGGCCTGCGTGGGTGGCGGCGCC
TTTGGAGGTGAAGCCACGGGTGGAGGATCCGATGAGGGTGACCGTGCGAG
CCCCGGTGCTGTACACACCCATTGACACGCTGCCGAGGTTTGCAGGCATG
TGTTATATGAAGCTCTTGACGCCCGCACAAGCCATTGAGTGGATCTGTCA
TGATGCTTTTATCCCTTGGGATAGGAAGGTTTGATGTGTTTTTCGCTTGT
TCGAGTTTTCATCTTCCCC

protein sequence of NO01G04850.1

>NO01G04850.1-protein ID=NO01G04850.1-protein|Name=NO01G04850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=640bp
MFSRCRRAGGRGATPRSMRLLVSLCRLVLLVVSAEAFRGLIRPSPSSSSS
SAPRVLATATAAPSSSFSPRLLAEHLSWPPASRNSRTRMPSMVMPSVAKV
LTAVPRFLGRKLMDGGDAIYLKKCLFLPPGSSNVAAAITSSTSAIGGTST
RDDSKENASQGQTSPFPPPPNTDMVLIFYPGIGLGPSSYRDTALAIQDAL
ASNYDIQAYVVIAKFMNNLGYLPQEPQRRLASILAELGERGISPRAPVAV
VGHSAGAFLAYDAALTRAQAFVHLGSTLNSRGVLPWTPRSVVEYPKPILQ
LLGEMDGYIRFTGGALEYAEVEGLMAKKGFEDVLLEKPVVVLPGVSHEQF
GDGQQSKMARMSGRRDLPPYVSLQEAHRMTGKIVGAFLALHLFPENGQAR
VGGANTVRSAFEATGRMVRPYLNEMTEQAEDDFIRWAQAEVASVEGVGRN
SVRACVFHTEQEFVYSKPTLDGESEYLQVCVRKQQQTNTIKIGFTKQISP
AFGLKMKRQEAVVQVLRRYPSKKAPTAAELNRRTFQKALERVSEEARRRY
DRYGRKLEFMADDEITAERGGGPAWVAAPLEVKPRVEDPMRVTVRAPVLY
TPIDTLPRFAGMCYMKLLTPAQAIEWICHDAFIPWDRKV*

mRNA from alignment at chr1:1282839..1285007-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO01G04850.1 ID=NO01G04850.1|Name=NO01G04850.1|organism=Nannochloropsis oceanica|type=mRNA|length=2169bp|location=Sequence derived from alignment at chr1:1282839..1285007- (Nannochloropsis oceanica)
TTCGGACACTTGTTGGCGCAATCGCATTTCTGAGCGAGGGTAGGCTGAAA
TGATGACCGCAGTGCCCTCAAGCACGCCACAAAACTAAACTGGGGGCAAT
AGGGCACAGCTAAATGTGCCTTTCCCTCTACCTCATAGAGCCATCTGCGT
GGCTCACTCACGAACCCCAATCATTTGCGTTTCCCCTCACATTGCACAGA
GCAACGTGGATTTCATGTTTTCACGCTGCCGCCGGGCGGGAGGCCGAGGG
GCCACTCCAAGAAGCATGCGGTTGCTCGTCAGTTTGTGCCGGCTTGTACT
GTTAGTGGTCAGTGCCGAGGCGTTCAGGGGGCTGATACGGCCATCGCCGT
CCTCGTCATCCTCCTCCGCTCCCCGTGTTCTAGCCACGGCCACCGCGGCC
CCTTCCTCCTCCTTCTCCCCTCGCCTACTCGCCGAGCACCTCTCATGGCC
ACCCGCGTCAAGAAACAGTCGGACGCGCATGCCAAGCATGGTCATGCCTA
GCGTTGCAAAGGTTCTGACCGCTGTGCCTCGTTTCCTGGGCCGGAAATTG
ATGGATGGAGGCGACGCTATATACCTCAAGAAATGCCTCTTCCTCCCTCC
AGGGAGCAGTAACGTTGCGGCTGCAATTACCAGCAGTACCAGCGCAATTG
GCGGCACCAGCACAAGAGATGACAGCAAGGAAAACGCTTCACAAGGACAA
ACATCGCCCTTCCCCCCTCCCCCCAACACTGACATGGTCCTAATTTTCTA
CCCTGGCATCGGACTCGGTCCCTCCTCCTATCGCGACACCGCCCTGGCCA
TTCAAGACGCCCTTGCGTCAAATTACGACATTCAAGCCTATGTGGTCATC
GCAAAGTTTATGAACAACCTGGGCTATCTTCCCCAAGAGCCCCAGCGCCG
CCTCGCGTCCATTCTAGCCGAGCTGGGCGAAAGAGGCATCTCTCCTCGGG
CCCCTGTTGCGGTTGTCGGTCATTCAGCCGGGGCGTTTCTGGCTTATGAC
GCCGCGTTAACCCGTGCACAGGCCTTTGTTCATTTAGGTTCAACGCTAAA
TAGCCGAGGAGTACTGCCGTGGACGCCACGAAGCGTGGTGGAGTACCCCA
AGCCGATTTTGCAGTTGCTGGGGGAGATGGATGGATATATCAGGTTCACT
GGTGGGGCGCTTGAGTATGCGGAGGTGGAGGGGTTGATGGCGAAGAAAGG
ATTCGAGGACGTGTTGCTTGAGAAGCCGGTTGTGGTGTTGCCCGGGGTGA
GTCATGAGCAGTTTGGGGACGGGCAGCAGAGTAAAATGGCTCGTATGAGT
GGGAGGAGGGATTTACCGCCTTATGTGTCATTGCAAGAGGCGCATCGAAT
GACGGGGAAGATCGTGGGGGCGTTTCTGGCGTTGCATTTATTTCCTGAAA
ACGGGCAGGCGAGAGTAGGCGGAGCGAATACCGTGCGGTCGGCGTTTGAG
GCGACAGGACGGATGGTACGGCCATACTTGAATGAAATGACCGAGCAGGC
GGAGGATGATTTTATCAGGTGGGCTCAAGCGGAGGTGGCGTCCGTGGAGG
GAGTGGGAAGGAATAGCGTGCGTGCCTGCGTGTTCCACACGGAGCAGGAG
TTCGTGTATTCGAAGCCGACCTTGGACGGGGAGAGTGAGTATTTACAGGT
GTGCGTGCGGAAGCAGCAGCAGACGAACACGATCAAGATCGGGTTCACGA
AACAAATTTCCCCGGCGTTTGGACTGAAAATGAAGAGACAAGAAGCGGTG
GTGCAGGTGTTGAGGCGGTACCCATCGAAAAAGGCCCCCACGGCCGCCGA
ATTGAATCGGAGGACGTTTCAAAAGGCGCTGGAGAGGGTGAGTGAGGAGG
CGAGGAGGAGGTACGATAGGTACGGGAGGAAGCTGGAGTTTATGGCAGAC
GATGAGATCACGGCAGAGAGGGGTGGGGGGCCTGCGTGGGTGGCGGCGCC
TTTGGAGGTGAAGCCACGGGTGGAGGATCCGATGAGGGTGACCGTGCGAG
CCCCGGTGCTGTACACACCCATTGACACGCTGCCGAGGTTTGCAGGCATG
TGTTATATGAAGCTCTTGACGCCCGCACAAGCCATTGAGTGGATCTGTCA
TGATGCTTTTATCCCTTGGGATAGGAAGGTTTGATGTGTTTTTCGCTTGT
TCGAGTTTTCATCTTCCCC

Coding sequence (CDS) from alignment at chr1:1282839..1285007-

>NO01G04850.1 ID=NO01G04850.1|Name=NO01G04850.1|organism=Nannochloropsis oceanica|type=CDS|length=1920bp|location=Sequence derived from alignment at chr1:1282839..1285007- (Nannochloropsis oceanica)
ATGTTTTCACGCTGCCGCCGGGCGGGAGGCCGAGGGGCCACTCCAAGAAG
CATGCGGTTGCTCGTCAGTTTGTGCCGGCTTGTACTGTTAGTGGTCAGTG
CCGAGGCGTTCAGGGGGCTGATACGGCCATCGCCGTCCTCGTCATCCTCC
TCCGCTCCCCGTGTTCTAGCCACGGCCACCGCGGCCCCTTCCTCCTCCTT
CTCCCCTCGCCTACTCGCCGAGCACCTCTCATGGCCACCCGCGTCAAGAA
ACAGTCGGACGCGCATGCCAAGCATGGTCATGCCTAGCGTTGCAAAGGTT
CTGACCGCTGTGCCTCGTTTCCTGGGCCGGAAATTGATGGATGGAGGCGA
CGCTATATACCTCAAGAAATGCCTCTTCCTCCCTCCAGGGAGCAGTAACG
TTGCGGCTGCAATTACCAGCAGTACCAGCGCAATTGGCGGCACCAGCACA
AGAGATGACAGCAAGGAAAACGCTTCACAAGGACAAACATCGCCCTTCCC
CCCTCCCCCCAACACTGACATGGTCCTAATTTTCTACCCTGGCATCGGAC
TCGGTCCCTCCTCCTATCGCGACACCGCCCTGGCCATTCAAGACGCCCTT
GCGTCAAATTACGACATTCAAGCCTATGTGGTCATCGCAAAGTTTATGAA
CAACCTGGGCTATCTTCCCCAAGAGCCCCAGCGCCGCCTCGCGTCCATTC
TAGCCGAGCTGGGCGAAAGAGGCATCTCTCCTCGGGCCCCTGTTGCGGTT
GTCGGTCATTCAGCCGGGGCGTTTCTGGCTTATGACGCCGCGTTAACCCG
TGCACAGGCCTTTGTTCATTTAGGTTCAACGCTAAATAGCCGAGGAGTAC
TGCCGTGGACGCCACGAAGCGTGGTGGAGTACCCCAAGCCGATTTTGCAG
TTGCTGGGGGAGATGGATGGATATATCAGGTTCACTGGTGGGGCGCTTGA
GTATGCGGAGGTGGAGGGGTTGATGGCGAAGAAAGGATTCGAGGACGTGT
TGCTTGAGAAGCCGGTTGTGGTGTTGCCCGGGGTGAGTCATGAGCAGTTT
GGGGACGGGCAGCAGAGTAAAATGGCTCGTATGAGTGGGAGGAGGGATTT
ACCGCCTTATGTGTCATTGCAAGAGGCGCATCGAATGACGGGGAAGATCG
TGGGGGCGTTTCTGGCGTTGCATTTATTTCCTGAAAACGGGCAGGCGAGA
GTAGGCGGAGCGAATACCGTGCGGTCGGCGTTTGAGGCGACAGGACGGAT
GGTACGGCCATACTTGAATGAAATGACCGAGCAGGCGGAGGATGATTTTA
TCAGGTGGGCTCAAGCGGAGGTGGCGTCCGTGGAGGGAGTGGGAAGGAAT
AGCGTGCGTGCCTGCGTGTTCCACACGGAGCAGGAGTTCGTGTATTCGAA
GCCGACCTTGGACGGGGAGAGTGAGTATTTACAGGTGTGCGTGCGGAAGC
AGCAGCAGACGAACACGATCAAGATCGGGTTCACGAAACAAATTTCCCCG
GCGTTTGGACTGAAAATGAAGAGACAAGAAGCGGTGGTGCAGGTGTTGAG
GCGGTACCCATCGAAAAAGGCCCCCACGGCCGCCGAATTGAATCGGAGGA
CGTTTCAAAAGGCGCTGGAGAGGGTGAGTGAGGAGGCGAGGAGGAGGTAC
GATAGGTACGGGAGGAAGCTGGAGTTTATGGCAGACGATGAGATCACGGC
AGAGAGGGGTGGGGGGCCTGCGTGGGTGGCGGCGCCTTTGGAGGTGAAGC
CACGGGTGGAGGATCCGATGAGGGTGACCGTGCGAGCCCCGGTGCTGTAC
ACACCCATTGACACGCTGCCGAGGTTTGCAGGCATGTGTTATATGAAGCT
CTTGACGCCCGCACAAGCCATTGAGTGGATCTGTCATGATGCTTTTATCC
CTTGGGATAGGAAGGTTTGA

Synonyms

Publications