NO01G04840.1, NO01G04840.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04840.1
Unique NameNO01G04840.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2439
Alignment locationchr1:1280400..1282838 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1280400..1282838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G04840.1 vs.
Match: EWM29390.1 (beta-glucan-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 725.7 bits (1872), Expect = 9.000e-206
Identity = 337/457 (73.74%), Postives = 392/457 (85.78%), Query Frame = 0 
Query:    1 MMVTYQWRRKGEGRLLMLALPHHVEILQDATLVGNATGVYVTLKGGMTAVLGDRWYMKEGLPVPVDVGKKGQKGEWTGDGGGGFE----FRAPRGVGNEGQKKVIREAVMSDLAAIRKGDFKRWNKTDVNDPYWEGKRMAMYARLAVIADEVGMVPEREEAVALAAAVMTPWLGGTNDNPFLYDTTWGGIILQSGLSNPYVNFGNTYYNDHHFQYGYFCYCAAVLARFDPEFVRKHKRALTALVADIANDDDASPSFPLARHKDFFDGHSWASGLFEQNNGKSQESSSEAINAYYGAHLYGRATGDKKLESFAKLLLAMELRSTRWYWHMRNDSKVYDAVFAANRMVGVVGGLDATCHTWFGESLEYVHGINLMPFTPITEALLDVGYVKEEYAVLSPVLTRQEEPVAEEWKGFVYLDHAVLDPASAWEEVQMLDKFDSGNSLSNSLWWVATRPGAG 454
            +M+TY+WRR+GEG+LLMLALPHHVEILQDA  + NAT V+ TLKG MT V+GDRWYMKEGLP P+D     +K +       G E    F APRG+ +E   K ++ AV  DLAAI+KG  +RWNKTD +D YW GKRMAMYARLA++A+EVGM  ER+EAVALAAA + PWL G+N NP +YDTTWGG++LQSGLS+PYVNFGNTYYNDHHFQYGYFCYCAAVLARFDP FV++HK AL ALVADIANDDD SPSFPLARHKDFFDGHSWASGLFEQNNGKSQESSSEAINAYYGAHLYGRATGD KLE+FAKLLLAME+RSTRWYWHM+N++K+YD +FAANRM GVVGGLDATCHTWFG SLEYVHGIN+MPFTP+TEA+LD  +V+EEY VL+ VL+R ++PV EEWKGF+Y+DHAV+DPA+AW EV+ L ++D+GNS SN+LWWVATRPGAG
Sbjct:  367 LMITYRWRRRGEGQLLMLALPHHVEILQDAAFLTNATDVFQTLKGSMTGVVGDRWYMKEGLPRPLDASDPTKKKKKVTRSHAGREHMYGFHAPRGIQDEKALKAVQGAVSEDLAAIKKGGTERWNKTDKSDAYWAGKRMAMYARLALVAEEVGMEKERKEAVALAAAALEPWLKGSNKNPLVYDTTWGGLVLQSGLSDPYVNFGNTYYNDHHFQYGYFCYCAAVLARFDPAFVKRHKGALRALVADIANDDDTSPSFPLARHKDFFDGHSWASGLFEQNNGKSQESSSEAINAYYGAHLYGRATGDVKLENFAKLLLAMEIRSTRWYWHMQNNTKIYDPIFAANRMAGVVGGLDATCHTWFGASLEYVHGINMMPFTPVTEAVLDASFVREEYPVLASVLSRSDDPVEEEWKGFIYMDHAVIDPAAAWTEVESLKRYDTGNSKSNTLWWVATRPGAG 823
The following BLAST results are available for this feature:
BLAST of NO01G04840.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29390.19.000e-20673.74beta-glucan-binding protein [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04840NO01G04840Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04840.1NO01G04840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04840.1.cds1NO01G04840.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04840.1 ID=NO01G04840.1|Name=NO01G04840.1|organism=Nannochloropsis oceanica|type=mRNA|length=2439bp
ATGATGGTGACGTATCAGTGGAGGAGAAAGGGGGAGGGACGGTTGTTAAT
GTTGGCGCTGCCGCATCACGTAGAGATCTTGCAGGACGCGACGTTGGTGG
GGAATGCGACTGGGGTATACGTCACTTTAAAGGGCGGCATGACGGCCGTG
TTGGGGGATCGCTGGTACATGAAGGAGGGGCTGCCGGTGCCTGTGGATGT
GGGGAAAAAGGGGCAGAAGGGGGAATGGACGGGAGATGGAGGGGGTGGGT
TCGAGTTTAGGGCGCCGAGAGGAGTTGGGAATGAGGGGCAGAAGAAGGTG
ATTCGGGAGGCGGTGATGTCTGATTTGGCCGCGATCCGGAAGGGTGACTT
TAAGAGGTGGAATAAGACGGACGTAAATGATCCATATTGGGAGGGAAAGC
GTATGGCGATGTATGCACGATTGGCCGTGATTGCCGATGAGGTGGGAATG
GTGCCTGAGAGGGAGGAGGCGGTTGCCCTGGCAGCGGCTGTGATGACCCC
GTGGTTGGGAGGGACGAATGACAACCCGTTTCTGTATGATACGACCTGGG
GTGGAATCATATTACAGAGTGGCCTTAGCAATCCGTACGTGAATTTTGGA
AATACCTATTACAACGACCACCATTTCCAGTATGGGTACTTTTGTTACTG
TGCTGCGGTGTTGGCGCGGTTCGATCCGGAGTTCGTGAGAAAGCACAAGA
GAGCGTTGACGGCCTTGGTCGCTGATATTGCGAACGATGATGATGCAAGT
CCGTCATTCCCCCTGGCGAGGCATAAGGATTTCTTTGATGGGCATTCGTG
GGCCAGTGGGCTGTTTGAGCAGAATAATGGCAAGAGCCAGGAGTCGTCGT
CGGAGGCAATTAATGCATATTATGGGGCTCACTTATACGGGCGGGCAACG
GGAGATAAAAAGTTGGAGAGTTTTGCGAAGCTCTTGTTGGCGATGGAGTT
GAGATCGACACGGTGGTATTGGCATATGCGTAATGATTCCAAGGTGTACG
ATGCGGTATTCGCGGCGAATCGGATGGTTGGGGTGGTGGGAGGGTTGGAC
GCCACATGCCACACGTGGTTTGGTGAGAGCTTGGAGTATGTGCATGGGAT
TAATTTGATGCCTTTCACACCCATCACTGAGGCATTGCTTGATGTGGGGT
ATGTGAAGGAGGAATACGCGGTGTTATCGCCCGTCTTGACGAGGCAGGAG
GAGCCTGTCGCAGAGGAATGGAAGGGGTTCGTTTACTTGGATCATGCGGT
CCTGGATCCGGCATCGGCGTGGGAAGAGGTGCAGATGTTGGATAAATTTG
ATTCAGGGAACAGTTTGAGTAATTCGCTGTGGTGGGTCGCGACCAGGCCG
GGGGCGGGGGAGGTGGGGAAGGGGGAGGAAGGAGGAAAGTAGGGAAGTGT
GAATGTGAAGTAGGAATTGAAGAGAAGAGGGGAGGGAAGCGAAGCGAAGA
GGAAAGGAAGGGAGTAGAGAGGAAGAACGAGAGATGGGATGCTTTCAACA
GGGTAAGAAAGGGTGGTTGGATTCATTTTCCTCTAATGTTGGATCAATGT
TTGTAAATTGTGTGGGAACGGAAGGGCCAGGATGCGAGGAAAGGGCAGGG
AGAGCGACAGGATAAAAGGGAGAAAACGGGTTTTGACGTAAAATGAGGGA
GCGGGGGATGGGGAGGAAGAGAGAGAGAGAGAGGCGAGCATATTGAGGTT
AGTAAAGCAATCAAAAGCTAAACAACGACATCTGATATGGAGTAGGTAGA
ACAGAAGAAAAGGTTGGAGTAAGAGTGGGAGGGGGGAACGAGAGAAAAGG
ACGCTTTTGTTGGGATAGCAGAATTTATGGGGCCCTGAACCTTCTCTTTA
GGGGAGAGATGGGGGGCAAGGCCAGAAAGGATGAAGCAAGAAAGATGCCA
AACAAAATATTGTTTGAAAGATTTGATCAGCCTATGAAATTAAATTGATT
GTATTACGCCAACTCTATAATTTGTGGGGAAGTCTGATTATTATATGGGT
AATACTGTTCTGGGCTTGGTAAGCTGCTGCCGCTGATGCTGTTGCTCCTG
CCGCTGATGTTGCAGCAGCTCCTACTCCTCCTCCTTCTCCTCCTCCTCCT
CCGCTTCCTTCTCATTCTCCTCTTCCTTCTCCAATAATGGGCACGCATAT
ACAGTCGCTTACATTATCAATTAAAATGTACCGTGAGATTTTGATACCTG
GAGGCTCCACTTTTGAGTATTTGAAAACATTTTATTTCGAAGAAGACGAG
CACATCTTTTGTTTCGCTCCTTTGTTTCTTTCTTCTTATGGGATCTTATT
GGGTGCGATCGTCCCTCACTAGTTGATTGATTGATAATTGCATGTCGCCT
CTTTGTTGTTCTTTGTCTATGGTACATTTACACATTCATTTGGGAGGAGA
AAAGGGAGGGAGGGCAGGAAGGGGGGAGGGAAGTAGGGG
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protein sequence of NO01G04840.1

>NO01G04840.1-protein ID=NO01G04840.1-protein|Name=NO01G04840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=464bp
MMVTYQWRRKGEGRLLMLALPHHVEILQDATLVGNATGVYVTLKGGMTAV
LGDRWYMKEGLPVPVDVGKKGQKGEWTGDGGGGFEFRAPRGVGNEGQKKV
IREAVMSDLAAIRKGDFKRWNKTDVNDPYWEGKRMAMYARLAVIADEVGM
VPEREEAVALAAAVMTPWLGGTNDNPFLYDTTWGGIILQSGLSNPYVNFG
NTYYNDHHFQYGYFCYCAAVLARFDPEFVRKHKRALTALVADIANDDDAS
PSFPLARHKDFFDGHSWASGLFEQNNGKSQESSSEAINAYYGAHLYGRAT
GDKKLESFAKLLLAMELRSTRWYWHMRNDSKVYDAVFAANRMVGVVGGLD
ATCHTWFGESLEYVHGINLMPFTPITEALLDVGYVKEEYAVLSPVLTRQE
EPVAEEWKGFVYLDHAVLDPASAWEEVQMLDKFDSGNSLSNSLWWVATRP
GAGEVGKGEEGGK*
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mRNA from alignment at chr1:1280400..1282838+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04840.1 ID=NO01G04840.1|Name=NO01G04840.1|organism=Nannochloropsis oceanica|type=mRNA|length=2439bp|location=Sequence derived from alignment at chr1:1280400..1282838+ (Nannochloropsis oceanica)
ATGATGGTGACGTATCAGTGGAGGAGAAAGGGGGAGGGACGGTTGTTAAT
GTTGGCGCTGCCGCATCACGTAGAGATCTTGCAGGACGCGACGTTGGTGG
GGAATGCGACTGGGGTATACGTCACTTTAAAGGGCGGCATGACGGCCGTG
TTGGGGGATCGCTGGTACATGAAGGAGGGGCTGCCGGTGCCTGTGGATGT
GGGGAAAAAGGGGCAGAAGGGGGAATGGACGGGAGATGGAGGGGGTGGGT
TCGAGTTTAGGGCGCCGAGAGGAGTTGGGAATGAGGGGCAGAAGAAGGTG
ATTCGGGAGGCGGTGATGTCTGATTTGGCCGCGATCCGGAAGGGTGACTT
TAAGAGGTGGAATAAGACGGACGTAAATGATCCATATTGGGAGGGAAAGC
GTATGGCGATGTATGCACGATTGGCCGTGATTGCCGATGAGGTGGGAATG
GTGCCTGAGAGGGAGGAGGCGGTTGCCCTGGCAGCGGCTGTGATGACCCC
GTGGTTGGGAGGGACGAATGACAACCCGTTTCTGTATGATACGACCTGGG
GTGGAATCATATTACAGAGTGGCCTTAGCAATCCGTACGTGAATTTTGGA
AATACCTATTACAACGACCACCATTTCCAGTATGGGTACTTTTGTTACTG
TGCTGCGGTGTTGGCGCGGTTCGATCCGGAGTTCGTGAGAAAGCACAAGA
GAGCGTTGACGGCCTTGGTCGCTGATATTGCGAACGATGATGATGCAAGT
CCGTCATTCCCCCTGGCGAGGCATAAGGATTTCTTTGATGGGCATTCGTG
GGCCAGTGGGCTGTTTGAGCAGAATAATGGCAAGAGCCAGGAGTCGTCGT
CGGAGGCAATTAATGCATATTATGGGGCTCACTTATACGGGCGGGCAACG
GGAGATAAAAAGTTGGAGAGTTTTGCGAAGCTCTTGTTGGCGATGGAGTT
GAGATCGACACGGTGGTATTGGCATATGCGTAATGATTCCAAGGTGTACG
ATGCGGTATTCGCGGCGAATCGGATGGTTGGGGTGGTGGGAGGGTTGGAC
GCCACATGCCACACGTGGTTTGGTGAGAGCTTGGAGTATGTGCATGGGAT
TAATTTGATGCCTTTCACACCCATCACTGAGGCATTGCTTGATGTGGGGT
ATGTGAAGGAGGAATACGCGGTGTTATCGCCCGTCTTGACGAGGCAGGAG
GAGCCTGTCGCAGAGGAATGGAAGGGGTTCGTTTACTTGGATCATGCGGT
CCTGGATCCGGCATCGGCGTGGGAAGAGGTGCAGATGTTGGATAAATTTG
ATTCAGGGAACAGTTTGAGTAATTCGCTGTGGTGGGTCGCGACCAGGCCG
GGGGCGGGGGAGGTGGGGAAGGGGGAGGAAGGAGGAAAGTAGGGAAGTGT
GAATGTGAAGTAGGAATTGAAGAGAAGAGGGGAGGGAAGCGAAGCGAAGA
GGAAAGGAAGGGAGTAGAGAGGAAGAACGAGAGATGGGATGCTTTCAACA
GGGTAAGAAAGGGTGGTTGGATTCATTTTCCTCTAATGTTGGATCAATGT
TTGTAAATTGTGTGGGAACGGAAGGGCCAGGATGCGAGGAAAGGGCAGGG
AGAGCGACAGGATAAAAGGGAGAAAACGGGTTTTGACGTAAAATGAGGGA
GCGGGGGATGGGGAGGAAGAGAGAGAGAGAGAGGCGAGCATATTGAGGTT
AGTAAAGCAATCAAAAGCTAAACAACGACATCTGATATGGAGTAGGTAGA
ACAGAAGAAAAGGTTGGAGTAAGAGTGGGAGGGGGGAACGAGAGAAAAGG
ACGCTTTTGTTGGGATAGCAGAATTTATGGGGCCCTGAACCTTCTCTTTA
GGGGAGAGATGGGGGGCAAGGCCAGAAAGGATGAAGCAAGAAAGATGCCA
AACAAAATATTGTTTGAAAGATTTGATCAGCCTATGAAATTAAATTGATT
GTATTACGCCAACTCTATAATTTGTGGGGAAGTCTGATTATTATATGGGT
AATACTGTTCTGGGCTTGGTAAGCTGCTGCCGCTGATGCTGTTGCTCCTG
CCGCTGATGTTGCAGCAGCTCCTACTCCTCCTCCTTCTCCTCCTCCTCCT
CCGCTTCCTTCTCATTCTCCTCTTCCTTCTCCAATAATGGGCACGCATAT
ACAGTCGCTTACATTATCAATTAAAATGTACCGTGAGATTTTGATACCTG
GAGGCTCCACTTTTGAGTATTTGAAAACATTTTATTTCGAAGAAGACGAG
CACATCTTTTGTTTCGCTCCTTTGTTTCTTTCTTCTTATGGGATCTTATT
GGGTGCGATCGTCCCTCACTAGTTGATTGATTGATAATTGCATGTCGCCT
CTTTGTTGTTCTTTGTCTATGGTACATTTACACATTCATTTGGGAGGAGA
AAAGGGAGGGAGGGCAGGAAGGGGGGAGGGAAGTAGGGG
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Coding sequence (CDS) from alignment at chr1:1280400..1282838+

>NO01G04840.1 ID=NO01G04840.1|Name=NO01G04840.1|organism=Nannochloropsis oceanica|type=CDS|length=1392bp|location=Sequence derived from alignment at chr1:1280400..1282838+ (Nannochloropsis oceanica)
ATGATGGTGACGTATCAGTGGAGGAGAAAGGGGGAGGGACGGTTGTTAAT
GTTGGCGCTGCCGCATCACGTAGAGATCTTGCAGGACGCGACGTTGGTGG
GGAATGCGACTGGGGTATACGTCACTTTAAAGGGCGGCATGACGGCCGTG
TTGGGGGATCGCTGGTACATGAAGGAGGGGCTGCCGGTGCCTGTGGATGT
GGGGAAAAAGGGGCAGAAGGGGGAATGGACGGGAGATGGAGGGGGTGGGT
TCGAGTTTAGGGCGCCGAGAGGAGTTGGGAATGAGGGGCAGAAGAAGGTG
ATTCGGGAGGCGGTGATGTCTGATTTGGCCGCGATCCGGAAGGGTGACTT
TAAGAGGTGGAATAAGACGGACGTAAATGATCCATATTGGGAGGGAAAGC
GTATGGCGATGTATGCACGATTGGCCGTGATTGCCGATGAGGTGGGAATG
GTGCCTGAGAGGGAGGAGGCGGTTGCCCTGGCAGCGGCTGTGATGACCCC
GTGGTTGGGAGGGACGAATGACAACCCGTTTCTGTATGATACGACCTGGG
GTGGAATCATATTACAGAGTGGCCTTAGCAATCCGTACGTGAATTTTGGA
AATACCTATTACAACGACCACCATTTCCAGTATGGGTACTTTTGTTACTG
TGCTGCGGTGTTGGCGCGGTTCGATCCGGAGTTCGTGAGAAAGCACAAGA
GAGCGTTGACGGCCTTGGTCGCTGATATTGCGAACGATGATGATGCAAGT
CCGTCATTCCCCCTGGCGAGGCATAAGGATTTCTTTGATGGGCATTCGTG
GGCCAGTGGGCTGTTTGAGCAGAATAATGGCAAGAGCCAGGAGTCGTCGT
CGGAGGCAATTAATGCATATTATGGGGCTCACTTATACGGGCGGGCAACG
GGAGATAAAAAGTTGGAGAGTTTTGCGAAGCTCTTGTTGGCGATGGAGTT
GAGATCGACACGGTGGTATTGGCATATGCGTAATGATTCCAAGGTGTACG
ATGCGGTATTCGCGGCGAATCGGATGGTTGGGGTGGTGGGAGGGTTGGAC
GCCACATGCCACACGTGGTTTGGTGAGAGCTTGGAGTATGTGCATGGGAT
TAATTTGATGCCTTTCACACCCATCACTGAGGCATTGCTTGATGTGGGGT
ATGTGAAGGAGGAATACGCGGTGTTATCGCCCGTCTTGACGAGGCAGGAG
GAGCCTGTCGCAGAGGAATGGAAGGGGTTCGTTTACTTGGATCATGCGGT
CCTGGATCCGGCATCGGCGTGGGAAGAGGTGCAGATGTTGGATAAATTTG
ATTCAGGGAACAGTTTGAGTAATTCGCTGTGGTGGGTCGCGACCAGGCCG
GGGGCGGGGGAGGTGGGGAAGGGGGAGGAAGGAGGAAAGTAG
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Synonyms
Publications