NO01G04820.1, NO01G04820.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G04820.1
Unique Name	NO01G04820.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2833
Alignment location	chr1:1277135..1280352 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:1277135..1280352 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO01G04820.1 vs.
Match: EWM29400.1 (BCP1 family [Nannochloropsis gaditana])

HSP 1 Score: 346.7 bits (888), Expect = 1.000e-91
Identity = 219/413 (53.03%), Postives = 278/413 (67.31%), Query Frame = 0

Query:    1 MKRKIAATAACGTVGGKKRQQAQKRHLQKMEEEAAAAEGYSSSSSSSSSKD-SADEIKLYEKGEVDDESSSSSSSSSSSEEEEDISKTAQDKGKGQKQISDNPTDLAKASKGSKKAEKKEKDEGGGKDVEVSFDFSDPDERFFFGIRSLLQWLAPEGVNVTSLAELIVQEKGLGSIIHCTNETDVFAFVTTLNIKAHQGNAGMLSLCERLLRPRCPASLKSALEKALSSPETFVFLHGRFVNLPLPLIPLLHKSSHDDMAWAQSSEASFPRIKQVLTVSPCTVDLGGGQK---ASLPYAPNDAIYDRFEDEIMVQAAEMNYCFSRRTEGEGEGRKDGGRGKEDGKEKGKDVEDNYDHDDVPPQKKKKEKKKQKVTGGNE---DCSEGGQGLVVSLVETKVLQENLLQIEEMVG 407
            MK+K  +T++     GK+      +  +   +   AAE   +SSSSSS  D + DEIKLY  GEV     S SSSSSSS+EE+  + T    G     IS N  +  ++ K      + E  E  GK+V+VSFD SDP+E F FGIRSLLQWL PEGVNVTSLA+LIV+EKGLGSIIHCT ETDVFAF TTL++ AHQ N G+ SLC++LLRPRCP +LK ALE AL SPETFVFLH RFVNLPLPL+P+LH SS +D AWAQS++A+FP IK ++T+SPC+VDLG G     +SLPYAPN+AIYDRFEDE++VQAAEMNYCF+R    E +      + +++   K + ++D      V  +  KK K+  KV   N+     S  GQG+V+SL+ETK L E L Q++EMVG
Sbjct:    1 MKKKTKSTSSTPKGCGKRPH----KDAEPAPDGTEAAELSLASSSSSSDDDYTEDEIKLYGTGEV----GSGSSSSSSSDEEDPKNSTT---GGANSTISKNYKEKERSIK------EHEIKEENGKEVQVSFDVSDPEENFVFGIRSLLQWLEPEGVNVTSLADLIVEEKGLGSIIHCTAETDVFAFATTLSLAAHQKNEGIHSLCDKLLRPRCPPTLKKALEHALGSPETFVFLHARFVNLPLPLVPVLHSSSEEDRAWAQSNDATFPAIKNLITLSPCSVDLGRGNNKNGSSLPYAPNEAIYDRFEDELLVQAAEMNYCFARAPPQEAK------KKEKEPNSKHELMKDGESDVKVAVEVLKKRKRSSKVGAKNDREGGESVAGQGVVISLIETKKLSECLRQMKEMVG 390

The following BLAST results are available for this feature:

BLAST of NO01G04820.1 vs.

BLAST of NO01G04820.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29400.1	1.000e-91	53.03	BCP1 family [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO01G04820	NO01G04820	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO01G04820.1	NO01G04820.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO01G04820.1.cds1	NO01G04820.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G04820.1.cds2	NO01G04820.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G04820.1.cds3	NO01G04820.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G04820.1.cds4	NO01G04820.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:1277135..1280352-
coding sequence from alignment at chr1:1277135..1280352-

mRNA sequence

>NO01G04820.1 ID=NO01G04820.1|Name=NO01G04820.1|organism=Nannochloropsis oceanica|type=mRNA|length=2833bp
TCTCTCCCCCCCTCCCTCTCCCCCTCTTCCCCCTCCCGGATAATCCAGCG
ACACGTCTCCTCCTGTGGGGTACGCCCGCCAATGCTCCACCAATACAGGC
TTAATGCCCTCCACCGGTGCAACAGCTATCCTCAGAAATCCCGTATACGA
TGAAATACTGGTCAGTTTTCCATCCTTCGTCCAACGAAATGTGATAGCGG
GCTCAGCAAACAACATCCACTGCTGTCCGCTTATCACCGTGATCTCAAAC
ACGGAGCCCGTCAGCGCCGGTGCCTGAAAGGTAGCCTCCTCTCGGTATTG
CAGACCGTTGATAACCGTTATCATATTCGCGGCGGTCACCAACGGATGAC
AACCATAGTACTCAACGGTTAGATACGGGCAGCCTCTCACCAAGTGCGTC
CGATAATAGCTCGGTCTATTATGCTGTAAGTGATTCACGGTGGGGAAAAC
CAATCCTACCGAGAGAGGATCATACGACTCAATATAATGCGTGCCGGTGT
TTTCAACCGCAGCCATGGCCATGTCCGGGGCGAAGAGATCGGCCTGAACC
ATTTTGGTAGAGAGATGCCTGAAGTAGGAGTAGGAGATCTGCAGGCCATT
GTCATCGGTCGCCTTGATGGCATACGGCAACACTGCGACATTGTTATCCC
CTTTGTTCAGCACCAAGTTAGTCCACCACGCGCCTGTGGGGTAGGGCCTT
CGGACTGCTCCCCACAGGGCGGTAGGTTGCAAGGGATGGGTTACATGGGA
GAACGGCACGGAATCCACAGCATGCGAACGCCGCAAAGCTAGCAAACCAA
ACAACGCCGCGGCCACCACCACTGCAACGCCAAGCAGCCAGGCGACGCCT
TTTAAATGCAGGGGTGCTCCGCCCCCGCTGAGACCGTCATCGCCTCCGCC
ATGTCCGCCGGCACTCGAATGGTTCGGCAGGTCTCCGGAGCCTCCCCCAA
GCAAGGGGGTGCTGTCCCGTGCTGGCGCCGAAGACCGGCTGTTGTTGATG
AGATTTTGGACTATATTTCCACTGCCTGTGTTGCTGACTGCTTTGCCGCC
TTTCCGTGTTCCGCCACTGCTACTGCTAGTGCTGTTTCCCCCGGCGATGA
CCGCGTCTTTGATGCCCAACGCCACGCTTCCATTGTTACCGCTGCTCATT
TTCGCTTCGGACAAAAAACGTGTGCAGTATGTGCTTGCCTTACGTAGTAT
CGTCCACAATGAGATGACAGGCGGACGCGTTCACGAAGGGGGCGTTTGCA
GGGGATCCCGCTTCAGTGATGTTTTGCCGCTTGAGGCCGTTGTCGTGTGG
CCATGCCGCGTGCTCGCCTCAAAAATCGACGAGCTGGAGAAGAGCTGGAA
ACCCAACAAAGAGGACCTATGCGTTCCCTATATTTTTATGGAGGGGTAGA
GTTCAAAGGATTGGGCATTGAGAAAGCGGGATATATTATTGCACTCGGGC
CAATAGAAAGCAGGAGGCGGTAATCGAAGGTCCCTCTGACCATCATACTA
TGTAGTACTTGATTTGCTTTGCTAGCCATCAACTCACGTCTACCACGCAC
GAACCGCACAGGATGAAAAGAAAGATAGCTGCCACCGCTGCTTGTGGCAC
TGTCGGGGGCAAGAAACGACAGCAGGCCCAGAAACGCCATTTGCAAAAGA
TGGAAGAAGAGGCCGCTGCGGCTGAAGGCTACTCCTCTTCATCATCTTCC
TCGTCGAGCAAGGACTCGGCAGACGAAATCAAGCTGTACGAAAAGGGAGA
GGTCGACGACGAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGAGG
AGGAAGAGGACATCTCGAAGACGGCCCAAGACAAGGGCAAAGGCCAAAAA
CAGATTAGCGACAATCCAACCGATTTAGCCAAAGCAAGCAAGGGAAGCAA
GAAGGCCGAAAAGAAAGAGAAGGATGAGGGTGGGGGAAAGGACGTGGAAG
TCAGCTTTGATTTTTCGGACCCGGACGAGCGTTTCTTTTTTGGCATCCGC
TCATTACTGCAGTGGCTGGCACCCGAGGGCGTAAATGTTACGTCCCTCGC
CGAGCTCATAGTTCAAGAGAAGGGCCTGGGAAGCATCATTCACTGCACGA
ACGAAACCGACGTGTTTGCCTTTGTAACTACCCTCAACATAAAAGCCCAC
CAAGGAAACGCCGGCATGCTCTCCCTCTGCGAGAGGCTCCTCCGTCCCCG
CTGCCCCGCCAGCCTGAAATCGGCGTTGGAAAAGGCCTTAAGTAGCCCCG
AGACGTTTGTGTTTTTGCATGGACGGTTTGTGAATCTGCCGTTACCGCTT
ATTCCCTTGTTGCACAAGTCGAGCCATGACGACATGGCGTGGGCACAGTC
AAGCGAGGCGTCCTTCCCCCGGATTAAGCAAGTTTTGACTGTAAGCCCCT
GCACGGTAGATCTAGGAGGAGGTCAAAAGGCCTCCCTTCCTTACGCGCCC
AACGACGCGATTTACGATCGATTCGAAGATGAGATCATGGTACAGGCTGC
AGAGATGAATTATTGCTTTTCTCGACGGACGGAGGGGGAGGGGGAGGGAA
GGAAAGATGGCGGGAGAGGAAAGGAGGATGGAAAAGAAAAGGGGAAGGAT
GTAGAGGACAACTACGATCATGACGACGTACCGCCGCAGAAGAAGAAGAA
GGAGAAGAAGAAGCAGAAAGTGACAGGTGGTAATGAAGATTGTTCTGAAG
GAGGGCAAGGTCTGGTGGTGAGTCTGGTGGAGACTAAAGTCCTACAAGAG
AACCTTCTGCAAATCGAGGAAATGGTGGGGTGAAGACAAAAGAGAAAAGC
AAGGACTTTGTAAGTCACCAGTCGATGTTTCTG

protein sequence of NO01G04820.1

>NO01G04820.1-protein ID=NO01G04820.1-protein|Name=NO01G04820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=407bp
MKRKIAATAACGTVGGKKRQQAQKRHLQKMEEEAAAAEGYSSSSSSSSSK
DSADEIKLYEKGEVDDESSSSSSSSSSSEEEEDISKTAQDKGKGQKQISD
NPTDLAKASKGSKKAEKKEKDEGGGKDVEVSFDFSDPDERFFFGIRSLLQ
WLAPEGVNVTSLAELIVQEKGLGSIIHCTNETDVFAFVTTLNIKAHQGNA
GMLSLCERLLRPRCPASLKSALEKALSSPETFVFLHGRFVNLPLPLIPLL
HKSSHDDMAWAQSSEASFPRIKQVLTVSPCTVDLGGGQKASLPYAPNDAI
YDRFEDEIMVQAAEMNYCFSRRTEGEGEGRKDGGRGKEDGKEKGKDVEDN
YDHDDVPPQKKKKEKKKQKVTGGNEDCSEGGQGLVVSLVETKVLQENLLQ
IEEMVG*

mRNA from alignment at chr1:1277135..1280352-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO01G04820.1 ID=NO01G04820.1|Name=NO01G04820.1|organism=Nannochloropsis oceanica|type=mRNA|length=3218bp|location=Sequence derived from alignment at chr1:1277135..1280352- (Nannochloropsis oceanica)
TCTCTCCCCCCCTCCCTCTCCCCCTCTTCCCCCTCCCGGATAATCCAGCG
ACACGTCTCCTCCTGTGGGGTACGCCCGCCAATGCTCCACCAATACAGGC
TTAATGCCCTCCACCGGTGCAACAGCTATCCTCAGAAATCCCGTATACGA
TGAAATACTGGTCAGTTTTCCATCCTTCGTCCAACGAAATGTGATAGCGG
GCTCAGCAAACAACATCCACTGCTGTCCGCTTATCACCGTGATCTCAAAC
ACGGAGCCCGTCAGCGCCGGTGCCTGAAAGGTAGCCTCCTCTCGGTATTG
CAGACCGTTGATAACCGTTATCATATTCGCGGCGGTCACCAACGGATGAC
AACCATAGTACTCAACGGTTAGATACGGGCAGCCTCTCACCAAGTGCGTC
CGATAATAGCTCGGTCTATTATGCTGTAAGTGATTCACGGTGGGGAAAAC
CAATCCTACCGAGAGAGGATCATACGACTCAATATAATGCGTGCCGGTGT
TTTCAACCGCAGCCATGGCCATGTCCGGGGCGAAGAGATCGGCCTGAACC
ATTTTGGTAGAGAGATGCCTGAAGTAGGAGTAGGAGATCTGCAGGCCATT
GTCATCGGTCGCCTTGATGGCATACGGCAACACTGCGACATTGTTATCCC
CTTTGTTCAGCACCAAGTTAGTCCACCACGCGCCTGTGGGGTAGGGCCTT
CGGACTGCTCCCCACAGGGCGGTAGGTTGCAAGGGATGGGTTACATGGGA
GAACGGCACGGAATCCACAGCATGCGAACGCCGCAAAGCTAGCAAACCAA
ACAACGCCGCGGCCACCACCACTGCAACGCCAAGCAGCCAGGCGACGCCT
TTTAAATGCAGGGGTGCTCCGCCCCCGCTGAGACCGTCATCGCCTCCGCC
ATGTCCGCCGGCACTCGAATGGTTCGGCAGGTCTCCGGAGCCTCCCCCAA
GCAAGGGGGTGCTGTCCCGTGCTGGCGCCGAAGACCGGCTGTTGTTGATG
AGATTTTGGACTATATTTCCACTGCCTGTGTTGCTGACTGCTTTGCCGCC
TTTCCGTGTTCCGCCACTGCTACTGCTAGTGCTGTTTCCCCCGGCGATGA
CCGCGTCTTTGATGCCCAACGCCACGCTTCCATTGTTACCGCTGCTCATT
TTCGCTTCGGACAAAAAACGTGTGCAGTATGTGCTTGCCTTACGTAGTAT
CGTCCACAATGAGATGACAGGCGGACGCGTTCACGAAGGGGGCGTTTGCA
GGGGATCCCGCTTCAGTGATGTTTTGCCGCTTGAGGCCGTTGTCGTGTGG
CCATGCCGCGTGCTCGCCTCAAAAATCGACGAGCTGGAGAAGAGCTGGAA
ACCCAACAAAGAGGACCTATGCGTTCCCTATATTTTTATGGAGGGGTAGA
GTTCAAAGGATTGGGCATTGAGAAAGCGGGATATATTATTGCACTCGGGC
CAATAGAAAGCAGGAGGCGGTAATCGAAGGTCCCTCTGACCATCATACTA
TGTAGTACTTGATTTGCTTTGCTAGCCATCAACTCACGTCTACCACGCAC
GAACCGCACAGGATGAAAAGAAAGATAGCTGCCACCGCTGCTTGTGGCAC
TGTCGGGGGCAAGAAACGACAGCAGGCCCAGAAACGCCATTTGCAAAAGA
TGGAAGAAGAGGCCGCTGCGGCTGAAGGTGAGCGGAGGGAGGAGAGGAGG
GGGTGGGGAGGCTAGATCTTGCCGGCCGCAATGGTAGATTCAGGCGCATT
TATATACGCGCAACAATCATTACAGGCTACTCCTCTTCATCATCTTCCTC
GTCGAGCAAGGACTCGGCAGACGAAATCAAGCTGTACGAAAAGGGAGAGG
TCGACGACGAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGAGGAG
GAAGAGGACATCTCGAAGACGGCCCAAGACAAGGGCAAAGGCCAAAAACA
GATTAGCGACAATCCAACCGATTTAGCCAAAGCAAGCAAGGGAAGCAAGA
AGGCCGAAAAGAAAGAGAAGGATGAGGGTGGGGGAAAGGACGTGGAAGTC
AGCTTTGATTTTTCGGACCCGGACGAGCGTTTCTTTTTTGGCATCCGCTC
ATTACTGCAGTGGCTGGCACCCGAGGTAAGCGTGGGCATGGAGGATGGGG
ACAGACGTAGATGATGATGGGAAGGAAAACTGATAAACGATGGTCGATTA
CAGGGCGAGTAATAGGACGGACAAGAGAGACATCGACGACCATTAAATCA
CTCACACACACTCACTTCTCTCTCCCTCCTCCCTACCTACGCAGGGCGTA
AATGTTACGTCCCTCGCCGAGCTCATAGTTCAAGAGAAGGGCCTGGGAAG
CATCATTCACTGCACGAACGAAACCGACGTGTTTGCCTTTGTAACTACCC
TCAACATAAAAGCCCACCAAGGAAACGCCGGCATGCTCTCCCTCTGCGAG
AGGCTCCTCCGTCCCCGCTGCCCCGCCAGCCTGAAATCGGCGTTGGAAAA
GGCCTTAAGTAGCCCCGAGACGTTTGTGTTTTTGCATGGACGGTTTGTGA
ATCTGCCGTTACCGCTTATTCCCTTGTTGCACAAGTCGAGCCATGACGAC
ATGGCGTGGGCACAGTCAAGCGAGGTATGTTTCTGATCGTGGAGAAAAGG
AATTCAACAAGGAAGAAAGGATGAGGACCAAAAAACGAACAAATCAAAGT
TTTACTCACCTCTTTCTGTTTCTCCTTCCTTCCCATTCAAAGGCGTCCTT
CCCCCGGATTAAGCAAGTTTTGACTGTAAGCCCCTGCACGGTAGATCTAG
GAGGAGGTCAAAAGGCCTCCCTTCCTTACGCGCCCAACGACGCGATTTAC
GATCGATTCGAAGATGAGATCATGGTACAGGCTGCAGAGATGAATTATTG
CTTTTCTCGACGGACGGAGGGGGAGGGGGAGGGAAGGAAAGATGGCGGGA
GAGGAAAGGAGGATGGAAAAGAAAAGGGGAAGGATGTAGAGGACAACTAC
GATCATGACGACGTACCGCCGCAGAAGAAGAAGAAGGAGAAGAAGAAGCA
GAAAGTGACAGGTGGTAATGAAGATTGTTCTGAAGGAGGGCAAGGTCTGG
TGGTGAGTCTGGTGGAGACTAAAGTCCTACAAGAGAACCTTCTGCAAATC
GAGGAAATGGTGGGGTGAAGACAAAAGAGAAAAGCAAGGACTTTGTAAGT
CACCAGTCGATGTTTCTG

Coding sequence (CDS) from alignment at chr1:1277135..1280352-

>NO01G04820.1 ID=NO01G04820.1|Name=NO01G04820.1|organism=Nannochloropsis oceanica|type=CDS|length=1221bp|location=Sequence derived from alignment at chr1:1277135..1280352- (Nannochloropsis oceanica)
ATGAAAAGAAAGATAGCTGCCACCGCTGCTTGTGGCACTGTCGGGGGCAA
GAAACGACAGCAGGCCCAGAAACGCCATTTGCAAAAGATGGAAGAAGAGG
CCGCTGCGGCTGAAGGCTACTCCTCTTCATCATCTTCCTCGTCGAGCAAG
GACTCGGCAGACGAAATCAAGCTGTACGAAAAGGGAGAGGTCGACGACGA
GAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGAGGAGGAAGAGGACA
TCTCGAAGACGGCCCAAGACAAGGGCAAAGGCCAAAAACAGATTAGCGAC
AATCCAACCGATTTAGCCAAAGCAAGCAAGGGAAGCAAGAAGGCCGAAAA
GAAAGAGAAGGATGAGGGTGGGGGAAAGGACGTGGAAGTCAGCTTTGATT
TTTCGGACCCGGACGAGCGTTTCTTTTTTGGCATCCGCTCATTACTGCAG
TGGCTGGCACCCGAGGGCGTAAATGTTACGTCCCTCGCCGAGCTCATAGT
TCAAGAGAAGGGCCTGGGAAGCATCATTCACTGCACGAACGAAACCGACG
TGTTTGCCTTTGTAACTACCCTCAACATAAAAGCCCACCAAGGAAACGCC
GGCATGCTCTCCCTCTGCGAGAGGCTCCTCCGTCCCCGCTGCCCCGCCAG
CCTGAAATCGGCGTTGGAAAAGGCCTTAAGTAGCCCCGAGACGTTTGTGT
TTTTGCATGGACGGTTTGTGAATCTGCCGTTACCGCTTATTCCCTTGTTG
CACAAGTCGAGCCATGACGACATGGCGTGGGCACAGTCAAGCGAGGCGTC
CTTCCCCCGGATTAAGCAAGTTTTGACTGTAAGCCCCTGCACGGTAGATC
TAGGAGGAGGTCAAAAGGCCTCCCTTCCTTACGCGCCCAACGACGCGATT
TACGATCGATTCGAAGATGAGATCATGGTACAGGCTGCAGAGATGAATTA
TTGCTTTTCTCGACGGACGGAGGGGGAGGGGGAGGGAAGGAAAGATGGCG
GGAGAGGAAAGGAGGATGGAAAAGAAAAGGGGAAGGATGTAGAGGACAAC
TACGATCATGACGACGTACCGCCGCAGAAGAAGAAGAAGGAGAAGAAGAA
GCAGAAAGTGACAGGTGGTAATGAAGATTGTTCTGAAGGAGGGCAAGGTC
TGGTGGTGAGTCTGGTGGAGACTAAAGTCCTACAAGAGAACCTTCTGCAA
ATCGAGGAAATGGTGGGGTGA

Synonyms

Publications